data_6JNH # _model_server_result.job_id A2DzxKeCykwSfN1JIajQ8A _model_server_result.datetime_utc '2024-10-09 23:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6JNH # _exptl.entry_id 6JNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JNH _cell.length_a 216.71 _cell.length_b 216.71 _cell.length_c 216.71 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A OG SER 122 A SER 122 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc3 F NA NA . A NA 205 1_555 G O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JNH _atom_sites.fract_transf_matrix[1][1] 0.004614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ASC A 1 201 385 ASC ASC . C 2 ASC A 1 202 386 ASC ASC . D 3 SO4 A 1 203 1 SO4 SO4 . E 3 SO4 A 1 204 2 SO4 SO4 . F 4 NA A 1 205 3 NA NA . G 5 HOH A 1 301 396 HOH HOH . G 5 HOH A 2 302 366 HOH HOH . G 5 HOH A 3 303 303 HOH HOH . G 5 HOH A 4 304 314 HOH HOH . G 5 HOH A 5 305 325 HOH HOH . G 5 HOH A 6 306 304 HOH HOH . G 5 HOH A 7 307 335 HOH HOH . G 5 HOH A 8 308 309 HOH HOH . G 5 HOH A 9 309 312 HOH HOH . G 5 HOH A 10 310 322 HOH HOH . G 5 HOH A 11 311 332 HOH HOH . G 5 HOH A 12 312 390 HOH HOH . G 5 HOH A 13 313 349 HOH HOH . G 5 HOH A 14 314 319 HOH HOH . G 5 HOH A 15 315 352 HOH HOH . G 5 HOH A 16 316 308 HOH HOH . G 5 HOH A 17 317 306 HOH HOH . G 5 HOH A 18 318 321 HOH HOH . G 5 HOH A 19 319 394 HOH HOH . G 5 HOH A 20 320 326 HOH HOH . G 5 HOH A 21 321 316 HOH HOH . G 5 HOH A 22 322 330 HOH HOH . G 5 HOH A 23 323 310 HOH HOH . G 5 HOH A 24 324 311 HOH HOH . G 5 HOH A 25 325 356 HOH HOH . G 5 HOH A 26 326 333 HOH HOH . G 5 HOH A 27 327 320 HOH HOH . G 5 HOH A 28 328 313 HOH HOH . G 5 HOH A 29 329 334 HOH HOH . G 5 HOH A 30 330 302 HOH HOH . G 5 HOH A 31 331 318 HOH HOH . G 5 HOH A 32 332 307 HOH HOH . G 5 HOH A 33 333 350 HOH HOH . G 5 HOH A 34 334 323 HOH HOH . G 5 HOH A 35 335 393 HOH HOH . G 5 HOH A 36 336 315 HOH HOH . G 5 HOH A 37 337 387 HOH HOH . G 5 HOH A 38 338 329 HOH HOH . G 5 HOH A 39 339 340 HOH HOH . G 5 HOH A 40 340 357 HOH HOH . G 5 HOH A 41 341 348 HOH HOH . G 5 HOH A 42 342 339 HOH HOH . G 5 HOH A 43 343 324 HOH HOH . G 5 HOH A 44 344 328 HOH HOH . G 5 HOH A 45 345 336 HOH HOH . G 5 HOH A 46 346 331 HOH HOH . G 5 HOH A 47 347 327 HOH HOH . G 5 HOH A 48 348 341 HOH HOH . G 5 HOH A 49 349 344 HOH HOH . G 5 HOH A 50 350 355 HOH HOH . G 5 HOH A 51 351 338 HOH HOH . G 5 HOH A 52 352 342 HOH HOH . G 5 HOH A 53 353 374 HOH HOH . G 5 HOH A 54 354 360 HOH HOH . G 5 HOH A 55 355 305 HOH HOH . G 5 HOH A 56 356 375 HOH HOH . G 5 HOH A 57 357 317 HOH HOH . G 5 HOH A 58 358 363 HOH HOH . G 5 HOH A 59 359 343 HOH HOH . G 5 HOH A 60 360 345 HOH HOH . G 5 HOH A 61 361 337 HOH HOH . G 5 HOH A 62 362 347 HOH HOH . G 5 HOH A 63 363 364 HOH HOH . G 5 HOH A 64 364 367 HOH HOH . G 5 HOH A 65 365 351 HOH HOH . G 5 HOH A 66 366 358 HOH HOH . G 5 HOH A 67 367 391 HOH HOH . G 5 HOH A 68 368 369 HOH HOH . G 5 HOH A 69 369 388 HOH HOH . G 5 HOH A 70 370 373 HOH HOH . G 5 HOH A 71 371 362 HOH HOH . G 5 HOH A 72 372 354 HOH HOH . G 5 HOH A 73 373 359 HOH HOH . G 5 HOH A 74 374 370 HOH HOH . G 5 HOH A 75 375 368 HOH HOH . G 5 HOH A 76 376 371 HOH HOH . G 5 HOH A 77 377 376 HOH HOH . G 5 HOH A 78 378 353 HOH HOH . G 5 HOH A 79 379 392 HOH HOH . G 5 HOH A 80 380 395 HOH HOH . G 5 HOH A 81 381 372 HOH HOH . G 5 HOH A 82 382 377 HOH HOH . G 5 HOH A 83 383 378 HOH HOH . G 5 HOH A 84 384 380 HOH HOH . G 5 HOH A 85 385 346 HOH HOH . G 5 HOH A 86 386 382 HOH HOH . G 5 HOH A 87 387 383 HOH HOH . G 5 HOH A 88 388 361 HOH HOH . G 5 HOH A 89 389 389 HOH HOH . G 5 HOH A 90 390 365 HOH HOH . G 5 HOH A 91 391 381 HOH HOH . G 5 HOH A 92 392 384 HOH HOH . G 5 HOH A 93 393 379 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 41.987 _atom_site.Cartn_y -17.817 _atom_site.Cartn_z -15.31 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 65.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #