data_6JNR # _model_server_result.job_id qca3gCAGT9-YTtJEVpCZMw _model_server_result.datetime_utc '2025-05-19 15:29:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jnr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 6JNR # _exptl.entry_id 6JNR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.471 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-oxidanyl-2-oxidanylidene-6-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)chromene-3-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JNR _cell.length_a 64.39 _cell.length_b 64.39 _cell.length_c 111.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C25 H26 O5' _chem_comp.formula_weight 406.471 _chem_comp.id WY5 _chem_comp.mon_nstd_flag . _chem_comp.name '7-oxidanyl-2-oxidanylidene-6-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)chromene-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAR CAL WY5 sing 376 n n CAX CAW WY5 sing 377 n n CAY CAW WY5 doub 378 n y CAY CAK WY5 sing 379 n y CAL CAS WY5 sing 380 n n CAL CAK WY5 sing 381 n n CAL CAM WY5 sing 382 n n CAW CAV WY5 sing 383 n y CAK CAT WY5 doub 384 n y CAM CAN WY5 sing 385 n n CAN CAO WY5 sing 386 n n CAV CAF WY5 sing 387 n n CAV CAU WY5 doub 388 n y CAT CAU WY5 sing 389 n y CAT CAO WY5 sing 390 n n OAB CAG WY5 sing 391 n n CAF CAG WY5 doub 392 n y CAF CAE WY5 sing 393 n y CAG CAH WY5 sing 394 n y CAE CAA WY5 doub 395 n y CAO CAP WY5 sing 396 n n CAO CAQ WY5 sing 397 n n OAD CAJ WY5 doub 398 n n CAH CAI WY5 doub 399 n y CAA CAI WY5 sing 400 n y CAA CAB WY5 sing 401 n n CAI OAA WY5 sing 402 n n CAB CAC WY5 doub 403 n n OAA CAD WY5 sing 404 n n CAC CAD WY5 sing 405 n n CAC CAJ WY5 sing 406 n n CAD OAC WY5 doub 407 n n CAJ OAE WY5 sing 408 n n OAE H1 WY5 sing 409 n n CAH H2 WY5 sing 410 n n OAB H3 WY5 sing 411 n n CAE H4 WY5 sing 412 n n CAB H5 WY5 sing 413 n n CAU H6 WY5 sing 414 n n CAP H7 WY5 sing 415 n n CAP H8 WY5 sing 416 n n CAP H9 WY5 sing 417 n n CAQ H10 WY5 sing 418 n n CAQ H11 WY5 sing 419 n n CAQ H12 WY5 sing 420 n n CAN H13 WY5 sing 421 n n CAN H14 WY5 sing 422 n n CAM H15 WY5 sing 423 n n CAM H16 WY5 sing 424 n n CAS H17 WY5 sing 425 n n CAS H18 WY5 sing 426 n n CAS H19 WY5 sing 427 n n CAR H20 WY5 sing 428 n n CAR H21 WY5 sing 429 n n CAR H22 WY5 sing 430 n n CAY H23 WY5 sing 431 n n CAX H24 WY5 sing 432 n n CAX H25 WY5 sing 433 n n CAX H26 WY5 sing 434 n n # _atom_sites.entry_id 6JNR _atom_sites.fract_transf_matrix[1][1] 0.01553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 WY5 A 1 501 1 WY5 WY5 . F 3 WY5 B 1 501 1 WY5 WY5 . G 4 HOH A 1 601 44 HOH HOH . G 4 HOH A 2 602 6 HOH HOH . G 4 HOH A 3 603 39 HOH HOH . G 4 HOH A 4 604 38 HOH HOH . G 4 HOH A 5 605 63 HOH HOH . G 4 HOH A 6 606 70 HOH HOH . G 4 HOH A 7 607 99 HOH HOH . G 4 HOH A 8 608 13 HOH HOH . G 4 HOH A 9 609 50 HOH HOH . G 4 HOH A 10 610 4 HOH HOH . G 4 HOH A 11 611 7 HOH HOH . G 4 HOH A 12 612 2 HOH HOH . G 4 HOH A 13 613 130 HOH HOH . G 4 HOH A 14 614 3 HOH HOH . G 4 HOH A 15 615 56 HOH HOH . G 4 HOH A 16 616 123 HOH HOH . G 4 HOH A 17 617 64 HOH HOH . G 4 HOH A 18 618 27 HOH HOH . G 4 HOH A 19 619 84 HOH HOH . G 4 HOH A 20 620 79 HOH HOH . G 4 HOH A 21 621 139 HOH HOH . G 4 HOH A 22 622 119 HOH HOH . G 4 HOH A 23 623 25 HOH HOH . G 4 HOH A 24 624 46 HOH HOH . G 4 HOH A 25 625 15 HOH HOH . G 4 HOH A 26 626 42 HOH HOH . G 4 HOH A 27 627 58 HOH HOH . G 4 HOH A 28 628 40 HOH HOH . G 4 HOH A 29 629 37 HOH HOH . G 4 HOH A 30 630 10 HOH HOH . G 4 HOH A 31 631 61 HOH HOH . G 4 HOH A 32 632 147 HOH HOH . G 4 HOH A 33 633 29 HOH HOH . G 4 HOH A 34 634 78 HOH HOH . G 4 HOH A 35 635 9 HOH HOH . G 4 HOH A 36 636 104 HOH HOH . G 4 HOH A 37 637 124 HOH HOH . G 4 HOH A 38 638 118 HOH HOH . G 4 HOH A 39 639 26 HOH HOH . G 4 HOH A 40 640 71 HOH HOH . G 4 HOH A 41 641 128 HOH HOH . G 4 HOH A 42 642 210 HOH HOH . G 4 HOH A 43 643 91 HOH HOH . G 4 HOH A 44 644 216 HOH HOH . G 4 HOH A 45 645 213 HOH HOH . G 4 HOH A 46 646 214 HOH HOH . G 4 HOH A 47 647 211 HOH HOH . H 4 HOH B 1 601 34 HOH HOH . H 4 HOH B 2 602 55 HOH HOH . H 4 HOH B 3 603 49 HOH HOH . H 4 HOH B 4 604 36 HOH HOH . H 4 HOH B 5 605 16 HOH HOH . H 4 HOH B 6 606 114 HOH HOH . H 4 HOH B 7 607 28 HOH HOH . H 4 HOH B 8 608 19 HOH HOH . H 4 HOH B 9 609 31 HOH HOH . H 4 HOH B 10 610 1 HOH HOH . H 4 HOH B 11 611 17 HOH HOH . H 4 HOH B 12 612 60 HOH HOH . H 4 HOH B 13 613 93 HOH HOH . H 4 HOH B 14 614 23 HOH HOH . H 4 HOH B 15 615 146 HOH HOH . H 4 HOH B 16 616 11 HOH HOH . H 4 HOH B 17 617 76 HOH HOH . H 4 HOH B 18 618 14 HOH HOH . H 4 HOH B 19 619 106 HOH HOH . H 4 HOH B 20 620 47 HOH HOH . H 4 HOH B 21 621 8 HOH HOH . H 4 HOH B 22 622 103 HOH HOH . H 4 HOH B 23 623 67 HOH HOH . H 4 HOH B 24 624 57 HOH HOH . H 4 HOH B 25 625 22 HOH HOH . H 4 HOH B 26 626 68 HOH HOH . H 4 HOH B 27 627 127 HOH HOH . H 4 HOH B 28 628 59 HOH HOH . H 4 HOH B 29 629 189 HOH HOH . H 4 HOH B 30 630 150 HOH HOH . H 4 HOH B 31 631 5 HOH HOH . H 4 HOH B 32 632 24 HOH HOH . H 4 HOH B 33 633 66 HOH HOH . H 4 HOH B 34 634 18 HOH HOH . H 4 HOH B 35 635 75 HOH HOH . H 4 HOH B 36 636 52 HOH HOH . H 4 HOH B 37 637 82 HOH HOH . H 4 HOH B 38 638 129 HOH HOH . H 4 HOH B 39 639 112 HOH HOH . H 4 HOH B 40 640 21 HOH HOH . H 4 HOH B 41 641 115 HOH HOH . H 4 HOH B 42 642 95 HOH HOH . H 4 HOH B 43 643 215 HOH HOH . H 4 HOH B 44 644 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC WY5 . . . F 3 49.791 -9.486 -2.365 1 31.7 ? OAC WY5 501 B 1 HETATM 2 C CAD WY5 . . . F 3 50.172 -8.484 -1.694 1 31.21 ? CAD WY5 501 B 1 HETATM 3 C CAC WY5 . . . F 3 51.008 -8.606 -0.475 1 27.36 ? CAC WY5 501 B 1 HETATM 4 C CAJ WY5 . . . F 3 51.355 -9.955 0.068 1 26.74 ? CAJ WY5 501 B 1 HETATM 5 O OAD WY5 . . . F 3 50.648 -10.943 -0.101 1 29.53 ? OAD WY5 501 B 1 HETATM 6 O OAE WY5 . . . F 3 52.314 -10.046 0.972 1 29.71 ? OAE WY5 501 B 1 HETATM 7 O OAA WY5 . . . F 3 49.805 -7.215 -2.077 1 33.07 ? OAA WY5 501 B 1 HETATM 8 C CAI WY5 . . . F 3 50.096 -6.08 -1.371 1 28.82 ? CAI WY5 501 B 1 HETATM 9 C CAH WY5 . . . F 3 49.649 -4.839 -1.822 1 25.53 ? CAH WY5 501 B 1 HETATM 10 C CAG WY5 . . . F 3 49.92 -3.708 -1.07 1 26.7 ? CAG WY5 501 B 1 HETATM 11 O OAB WY5 . . . F 3 49.464 -2.461 -1.348 1 23.54 ? OAB WY5 501 B 1 HETATM 12 C CAF WY5 . . . F 3 50.685 -3.906 0.188 1 29.23 ? CAF WY5 501 B 1 HETATM 13 C CAE WY5 . . . F 3 51.22 -5.111 0.611 1 24.13 ? CAE WY5 501 B 1 HETATM 14 C CAA WY5 . . . F 3 50.881 -6.241 -0.116 1 26.92 ? CAA WY5 501 B 1 HETATM 15 C CAB WY5 . . . F 3 51.298 -7.497 0.308 1 25.79 ? CAB WY5 501 B 1 HETATM 16 C CAV WY5 . . . F 3 50.946 -2.712 1.024 1 34.25 ? CAV WY5 501 B 1 HETATM 17 C CAU WY5 . . . F 3 50.249 -2.611 2.231 1 32.5 ? CAU WY5 501 B 1 HETATM 18 C CAT WY5 . . . F 3 50.426 -1.546 3.11 1 28.17 ? CAT WY5 501 B 1 HETATM 19 C CAO WY5 . . . F 3 49.652 -1.422 4.397 1 28.9 ? CAO WY5 501 B 1 HETATM 20 C CAP WY5 . . . F 3 49.576 -2.756 5.118 1 27.57 ? CAP WY5 501 B 1 HETATM 21 C CAQ WY5 . . . F 3 48.264 -0.925 4.009 1 33.79 ? CAQ WY5 501 B 1 HETATM 22 C CAN WY5 . . . F 3 50.22 -0.422 5.392 1 28.51 ? CAN WY5 501 B 1 HETATM 23 C CAM WY5 . . . F 3 50.64 0.881 4.73 1 28.52 ? CAM WY5 501 B 1 HETATM 24 C CAL WY5 . . . F 3 51.541 0.747 3.532 1 26.3 ? CAL WY5 501 B 1 HETATM 25 C CAS WY5 . . . F 3 52.956 0.79 4.069 1 32.29 ? CAS WY5 501 B 1 HETATM 26 C CAR WY5 . . . F 3 51.296 1.934 2.62 1 29.53 ? CAR WY5 501 B 1 HETATM 27 C CAK WY5 . . . F 3 51.348 -0.474 2.688 1 26.99 ? CAK WY5 501 B 1 HETATM 28 C CAY WY5 . . . F 3 52 -0.58 1.459 1 30.13 ? CAY WY5 501 B 1 HETATM 29 C CAW WY5 . . . F 3 51.817 -1.622 0.554 1 26.26 ? CAW WY5 501 B 1 HETATM 30 C CAX WY5 . . . F 3 52.556 -1.898 -0.72 1 26.87 ? CAX WY5 501 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #