data_6JNT # _model_server_result.job_id U3JNtNx6xOvFUEBSiqb4EA _model_server_result.datetime_utc '2024-10-20 19:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 6JNT # _exptl.entry_id 6JNT _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JNT _cell.length_a 69.109 _cell.length_b 171.901 _cell.length_c 195.013 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6JNT _atom_sites.fract_transf_matrix[1][1] 0.01447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 527 HEM HEM . F 3 NDP A 1 602 528 NDP NDP . G 2 HEM B 1 601 527 HEM HEM . H 3 NDP B 1 602 528 NDP NDP . I 2 HEM C 1 601 527 HEM HEM . J 3 NDP C 1 602 528 NDP NDP . K 2 HEM D 1 601 527 HEM HEM . L 3 NDP D 1 602 528 NDP NDP . M 4 HOH A 1 701 8 HOH HOH . M 4 HOH A 2 702 20 HOH HOH . M 4 HOH A 3 703 17 HOH HOH . M 4 HOH A 4 704 5 HOH HOH . M 4 HOH A 5 705 1 HOH HOH . N 4 HOH B 1 701 6 HOH HOH . N 4 HOH B 2 702 13 HOH HOH . N 4 HOH B 3 703 14 HOH HOH . N 4 HOH B 4 704 4 HOH HOH . N 4 HOH B 5 705 18 HOH HOH . O 4 HOH C 1 701 11 HOH HOH . O 4 HOH C 2 702 3 HOH HOH . O 4 HOH C 3 703 12 HOH HOH . O 4 HOH C 4 704 15 HOH HOH . O 4 HOH C 5 705 16 HOH HOH . P 4 HOH D 1 701 9 HOH HOH . P 4 HOH D 2 702 7 HOH HOH . P 4 HOH D 3 703 10 HOH HOH . P 4 HOH D 4 704 2 HOH HOH . P 4 HOH D 5 705 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 61.451 84.478 121.636 1 18.14 ? CHA HEM 601 B 1 HETATM 2 C CHB HEM . . . G 2 58.121 85.982 124.824 1 14.42 ? CHB HEM 601 B 1 HETATM 3 C CHC HEM . . . G 2 56.963 89.681 121.917 1 23.42 ? CHC HEM 601 B 1 HETATM 4 C CHD HEM . . . G 2 60.671 88.507 119.034 1 24.33 ? CHD HEM 601 B 1 HETATM 5 C C1A HEM . . . G 2 60.643 84.539 122.756 1 13.93 ? C1A HEM 601 B 1 HETATM 6 C C2A HEM . . . G 2 60.632 83.618 123.875 1 7.49 ? C2A HEM 601 B 1 HETATM 7 C C3A HEM . . . G 2 59.712 84.043 124.744 1 7.48 ? C3A HEM 601 B 1 HETATM 8 C C4A HEM . . . G 2 59.104 85.244 124.212 1 11.24 ? C4A HEM 601 B 1 HETATM 9 C CMA HEM . . . G 2 59.341 83.4 126.099 1 7.41 ? CMA HEM 601 B 1 HETATM 10 C CAA HEM . . . G 2 61.537 82.383 124.047 1 7.44 ? CAA HEM 601 B 1 HETATM 11 C CBA HEM . . . G 2 62.998 82.803 124.17 1 7.44 ? CBA HEM 601 B 1 HETATM 12 C CGA HEM . . . G 2 63.841 81.577 124.417 1 7.39 ? CGA HEM 601 B 1 HETATM 13 O O1A HEM . . . G 2 65.099 81.68 124.385 1 7.39 ? O1A HEM 601 B 1 HETATM 14 O O2A HEM . . . G 2 63.248 80.489 124.644 1 7.36 ? O2A HEM 601 B 1 HETATM 15 C C1B HEM . . . G 2 57.577 87.145 124.354 1 21.17 ? C1B HEM 601 B 1 HETATM 16 C C2B HEM . . . G 2 56.7 88.02 125.102 1 27.84 ? C2B HEM 601 B 1 HETATM 17 C C3B HEM . . . G 2 56.357 89.05 124.302 1 29.59 ? C3B HEM 601 B 1 HETATM 18 C C4B HEM . . . G 2 57.032 88.86 123.025 1 25.5 ? C4B HEM 601 B 1 HETATM 19 C CMB HEM . . . G 2 56.264 87.748 126.562 1 30.82 ? CMB HEM 601 B 1 HETATM 20 C CAB HEM . . . G 2 55.459 90.266 124.643 1 33.68 ? CAB HEM 601 B 1 HETATM 21 C CBB HEM . . . G 2 55.162 90.575 125.908 1 34.92 ? CBB HEM 601 B 1 HETATM 22 C C1C HEM . . . G 2 57.938 89.755 120.958 1 24.18 ? C1C HEM 601 B 1 HETATM 23 C C2C HEM . . . G 2 58.249 90.903 120.141 1 26.89 ? C2C HEM 601 B 1 HETATM 24 C C3C HEM . . . G 2 59.271 90.566 119.334 1 33.33 ? C3C HEM 601 B 1 HETATM 25 C C4C HEM . . . G 2 59.649 89.2 119.64 1 27.54 ? C4C HEM 601 B 1 HETATM 26 C CMC HEM . . . G 2 57.519 92.253 120.202 1 24.75 ? CMC HEM 601 B 1 HETATM 27 C CAC HEM . . . G 2 60.028 91.419 118.281 1 43.08 ? CAC HEM 601 B 1 HETATM 28 C CBC HEM . . . G 2 60.052 92.753 118.353 1 48.67 ? CBC HEM 601 B 1 HETATM 29 C C1D HEM . . . G 2 61.239 87.349 119.499 1 21.64 ? C1D HEM 601 B 1 HETATM 30 C C2D HEM . . . G 2 62.429 86.705 118.981 1 18.85 ? C2D HEM 601 B 1 HETATM 31 C C3D HEM . . . G 2 62.642 85.597 119.695 1 15 ? C3D HEM 601 B 1 HETATM 32 C C4D HEM . . . G 2 61.595 85.49 120.696 1 18.9 ? C4D HEM 601 B 1 HETATM 33 C CMD HEM . . . G 2 63.292 87.211 117.807 1 19.12 ? CMD HEM 601 B 1 HETATM 34 C CAD HEM . . . G 2 63.787 84.587 119.502 1 7.69 ? CAD HEM 601 B 1 HETATM 35 C CBD HEM . . . G 2 65.104 85.222 119.888 1 7.7 ? CBD HEM 601 B 1 HETATM 36 C CGD HEM . . . G 2 66.202 84.458 119.222 1 7.71 ? CGD HEM 601 B 1 HETATM 37 O O1D HEM . . . G 2 66.456 84.738 118.025 1 7.78 ? O1D HEM 601 B 1 HETATM 38 O O2D HEM . . . G 2 66.814 83.599 119.895 1 7.65 ? O2D HEM 601 B 1 HETATM 39 N NA HEM . . . G 2 59.688 85.516 122.992 1 15.07 ? NA HEM 601 B 1 HETATM 40 N NB HEM . . . G 2 57.754 87.677 123.092 1 22.07 ? NB HEM 601 B 1 HETATM 41 N NC HEM . . . G 2 58.807 88.731 120.627 1 23.53 ? NC HEM 601 B 1 HETATM 42 N ND HEM . . . G 2 60.751 86.584 120.54 1 20.45 ? ND HEM 601 B 1 HETATM 43 FE FE HEM . . . G 2 59.056 87.023 121.668 1 20.94 ? FE HEM 601 B 1 HETATM 44 H HHB HEM . . . G 2 57.777 85.643 125.677 1 17.3 ? HHB HEM 601 B 1 HETATM 45 H HHC HEM . . . G 2 56.168 90.244 121.81 1 28.11 ? HHC HEM 601 B 1 HETATM 46 H HHD HEM . . . G 2 61.024 88.872 118.195 1 29.2 ? HHD HEM 601 B 1 HETATM 47 H HMA HEM . . . G 2 58.837 84.044 126.639 1 8.9 ? HMA HEM 601 B 1 HETATM 48 H HMAA HEM . . . G 2 60.158 83.143 126.574 1 8.9 ? HMAA HEM 601 B 1 HETATM 49 H HMAB HEM . . . G 2 58.79 82.604 125.943 1 8.9 ? HMAB HEM 601 B 1 HETATM 50 H HAA HEM . . . G 2 61.436 81.803 123.276 1 8.92 ? HAA HEM 601 B 1 HETATM 51 H HAAA HEM . . . G 2 61.275 81.904 124.849 1 8.92 ? HAAA HEM 601 B 1 HETATM 52 H HBA HEM . . . G 2 63.097 83.42 124.912 1 8.92 ? HBA HEM 601 B 1 HETATM 53 H HBAA HEM . . . G 2 63.283 83.234 123.349 1 8.92 ? HBAA HEM 601 B 1 HETATM 54 H HMB HEM . . . G 2 56.298 86.795 126.738 1 36.98 ? HMB HEM 601 B 1 HETATM 55 H HMBA HEM . . . G 2 55.357 88.068 126.693 1 36.98 ? HMBA HEM 601 B 1 HETATM 56 H HMBB HEM . . . G 2 56.861 88.211 127.17 1 36.98 ? HMBB HEM 601 B 1 HETATM 57 H HAB HEM . . . G 2 55.109 90.807 123.931 1 40.41 ? HAB HEM 601 B 1 HETATM 58 H HBB HEM . . . G 2 54.598 91.34 126.101 1 41.9 ? HBB HEM 601 B 1 HETATM 59 H HBBA HEM . . . G 2 55.511 90.034 126.634 1 41.9 ? HBBA HEM 601 B 1 HETATM 60 H HMC HEM . . . G 2 56.565 92.102 120.288 1 29.7 ? HMC HEM 601 B 1 HETATM 61 H HMCA HEM . . . G 2 57.695 92.753 119.39 1 29.7 ? HMCA HEM 601 B 1 HETATM 62 H HMCB HEM . . . G 2 57.836 92.759 120.967 1 29.7 ? HMCB HEM 601 B 1 HETATM 63 H HAC HEM . . . G 2 60.488 90.979 117.563 1 51.69 ? HAC HEM 601 B 1 HETATM 64 H HBC HEM . . . G 2 60.531 93.266 117.684 1 58.4 ? HBC HEM 601 B 1 HETATM 65 H HBCA HEM . . . G 2 59.59 93.208 119.074 1 58.4 ? HBCA HEM 601 B 1 HETATM 66 H HMD HEM . . . G 2 62.719 87.378 117.029 1 22.94 ? HMD HEM 601 B 1 HETATM 67 H HMDA HEM . . . G 2 63.963 86.535 117.579 1 22.94 ? HMDA HEM 601 B 1 HETATM 68 H HMDB HEM . . . G 2 63.741 88.043 118.065 1 22.94 ? HMDB HEM 601 B 1 HETATM 69 H HAD HEM . . . G 2 63.822 84.315 118.571 1 9.23 ? HAD HEM 601 B 1 HETATM 70 H HADA HEM . . . G 2 63.628 83.81 120.06 1 9.23 ? HADA HEM 601 B 1 HETATM 71 H HBD HEM . . . G 2 65.216 85.185 120.851 1 9.24 ? HBD HEM 601 B 1 HETATM 72 H HBDA HEM . . . G 2 65.122 86.146 119.594 1 9.24 ? HBDA HEM 601 B 1 HETATM 73 H HHA HEM . . . G 2 61.964 83.655 121.495 1 21.77 ? HHA HEM 601 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 73 #