data_6JNT
#
_model_server_result.job_id            mpCfgPWps6f1IZgw2Nrx1w 
_model_server_result.datetime_utc      '2024-10-20 19:09:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jnt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    6JNT 
#
_exptl.entry_id    6JNT 
_exptl.method      'ELECTRON CRYSTALLOGRAPHY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JNT 
_cell.length_a            69.109 
_cell.length_b            171.901 
_cell.length_c            195.013 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JNT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6JNT 
_atom_sites.fract_transf_matrix[1][1]    0.01447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005128 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 527 HEM HEM . 
F 3 NDP A 1 602 528 NDP NDP . 
G 2 HEM B 1 601 527 HEM HEM . 
H 3 NDP B 1 602 528 NDP NDP . 
I 2 HEM C 1 601 527 HEM HEM . 
J 3 NDP C 1 602 528 NDP NDP . 
K 2 HEM D 1 601 527 HEM HEM . 
L 3 NDP D 1 602 528 NDP NDP . 
M 4 HOH A 1 701 8 HOH HOH . 
M 4 HOH A 2 702 20 HOH HOH . 
M 4 HOH A 3 703 17 HOH HOH . 
M 4 HOH A 4 704 5 HOH HOH . 
M 4 HOH A 5 705 1 HOH HOH . 
N 4 HOH B 1 701 6 HOH HOH . 
N 4 HOH B 2 702 13 HOH HOH . 
N 4 HOH B 3 703 14 HOH HOH . 
N 4 HOH B 4 704 4 HOH HOH . 
N 4 HOH B 5 705 18 HOH HOH . 
O 4 HOH C 1 701 11 HOH HOH . 
O 4 HOH C 2 702 3 HOH HOH . 
O 4 HOH C 3 703 12 HOH HOH . 
O 4 HOH C 4 704 15 HOH HOH . 
O 4 HOH C 5 705 16 HOH HOH . 
P 4 HOH D 1 701 9 HOH HOH . 
P 4 HOH D 2 702 7 HOH HOH . 
P 4 HOH D 3 703 10 HOH HOH . 
P 4 HOH D 4 704 2 HOH HOH . 
P 4 HOH D 5 705 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 2 78.808 59.166 147.459 1 23.52 ? CHA HEM 601 D 1 
HETATM 2 C CHB HEM . . . K 2 76.029 55.49 145.923 1 19.62 ? CHB HEM 601 D 1 
HETATM 3 C CHC HEM . . . K 2 78.922 52.425 148.329 1 22 ? CHC HEM 601 D 1 
HETATM 4 C CHD HEM . . . K 2 82.044 56.018 149.199 1 27.01 ? CHD HEM 601 D 1 
HETATM 5 C C1A HEM . . . K 2 77.823 58.446 146.813 1 25.13 ? C1A HEM 601 D 1 
HETATM 6 C C2A HEM . . . K 2 76.786 58.985 145.955 1 25.97 ? C2A HEM 601 D 1 
HETATM 7 C C3A HEM . . . K 2 76.02 57.974 145.53 1 22.85 ? C3A HEM 601 D 1 
HETATM 8 C C4A HEM . . . K 2 76.531 56.749 146.108 1 21.18 ? C4A HEM 601 D 1 
HETATM 9 C CMA HEM . . . K 2 74.811 58.086 144.582 1 21.31 ? CMA HEM 601 D 1 
HETATM 10 C CAA HEM . . . K 2 76.616 60.471 145.583 1 29.47 ? CAA HEM 601 D 1 
HETATM 11 C CBA HEM . . . K 2 77.781 60.908 144.7 1 31.96 ? CBA HEM 601 D 1 
HETATM 12 C CGA HEM . . . K 2 77.564 62.318 144.219 1 34.29 ? CGA HEM 601 D 1 
HETATM 13 O O1A HEM . . . K 2 78.494 62.877 143.591 1 36.37 ? O1A HEM 601 D 1 
HETATM 14 O O2A HEM . . . K 2 76.471 62.887 144.47 1 34.29 ? O2A HEM 601 D 1 
HETATM 15 C C1B HEM . . . K 2 76.603 54.328 146.385 1 21.31 ? C1B HEM 601 D 1 
HETATM 16 C C2B HEM . . . K 2 76.207 52.976 146.032 1 22.17 ? C2B HEM 601 D 1 
HETATM 17 C C3B HEM . . . K 2 77.002 52.12 146.709 1 23.83 ? C3B HEM 601 D 1 
HETATM 18 C C4B HEM . . . K 2 77.934 52.906 147.498 1 22.6 ? C4B HEM 601 D 1 
HETATM 19 C CMB HEM . . . K 2 75.053 52.643 145.061 1 21.83 ? CMB HEM 601 D 1 
HETATM 20 C CAB HEM . . . K 2 77.023 50.573 146.672 1 25.94 ? CAB HEM 601 D 1 
HETATM 21 C CBB HEM . . . K 2 76.519 49.899 145.636 1 27.48 ? CBB HEM 601 D 1 
HETATM 22 C C1C HEM . . . K 2 80.083 53.101 148.618 1 25.18 ? C1C HEM 601 D 1 
HETATM 23 C C2C HEM . . . K 2 81.383 52.515 148.859 1 29.52 ? C2C HEM 601 D 1 
HETATM 24 C C3C HEM . . . K 2 82.257 53.509 149.106 1 30.82 ? C3C HEM 601 D 1 
HETATM 25 C C4C HEM . . . K 2 81.523 54.755 149.014 1 28.06 ? C4C HEM 601 D 1 
HETATM 26 C CMC HEM . . . K 2 81.659 50.999 148.833 1 31.91 ? CMC HEM 601 D 1 
HETATM 27 C CAC HEM . . . K 2 83.782 53.448 149.41 1 33.83 ? CAC HEM 601 D 1 
HETATM 28 C CBC HEM . . . K 2 84.483 52.314 149.289 1 35.09 ? CBC HEM 601 D 1 
HETATM 29 C C1D HEM . . . K 2 81.448 57.198 148.813 1 22.61 ? C1D HEM 601 D 1 
HETATM 30 C C2D HEM . . . K 2 82.029 58.533 148.895 1 17.83 ? C2D HEM 601 D 1 
HETATM 31 C C3D HEM . . . K 2 81.125 59.388 148.411 1 15.78 ? C3D HEM 601 D 1 
HETATM 32 C C4D HEM . . . K 2 79.951 58.64 148.007 1 20.4 ? C4D HEM 601 D 1 
HETATM 33 C CMD HEM . . . K 2 83.436 58.894 149.44 1 14.9 ? CMD HEM 601 D 1 
HETATM 34 C CAD HEM . . . K 2 81.301 60.913 148.305 1 9.72 ? CAD HEM 601 D 1 
HETATM 35 C CBD HEM . . . K 2 82.034 61.236 147.009 1 7.37 ? CBD HEM 601 D 1 
HETATM 36 C CGD HEM . . . K 2 82.183 62.732 146.89 1 7.3 ? CGD HEM 601 D 1 
HETATM 37 O O1D HEM . . . K 2 83.028 63.302 147.635 1 7.29 ? O1D HEM 601 D 1 
HETATM 38 O O2D HEM . . . K 2 81.467 63.329 146.046 1 7.26 ? O2D HEM 601 D 1 
HETATM 39 N NA HEM . . . K 2 77.633 57.07 146.885 1 21.93 ? NA HEM 601 D 1 
HETATM 40 N NB HEM . . . K 2 77.661 54.247 147.278 1 21.4 ? NB HEM 601 D 1 
HETATM 41 N NC HEM . . . K 2 80.203 54.472 148.719 1 24.1 ? NC HEM 601 D 1 
HETATM 42 N ND HEM . . . K 2 80.179 57.303 148.267 1 20.86 ? ND HEM 601 D 1 
HETATM 43 FE FE HEM . . . K 2 78.87 55.783 147.922 1 21.1 ? FE HEM 601 D 1 
HETATM 44 H HHB HEM . . . K 2 75.192 55.409 145.42 1 23.55 ? HHB HEM 601 D 1 
HETATM 45 H HHC HEM . . . K 2 78.788 51.546 148.74 1 26.4 ? HHC HEM 601 D 1 
HETATM 46 H HHD HEM . . . K 2 82.915 56.081 149.643 1 32.41 ? HHD HEM 601 D 1 
HETATM 47 H HMA HEM . . . K 2 74.308 58.901 144.789 1 25.57 ? HMA HEM 601 D 1 
HETATM 48 H HMAA HEM . . . K 2 74.23 57.306 144.699 1 25.57 ? HMAA HEM 601 D 1 
HETATM 49 H HMAB HEM . . . K 2 75.125 58.123 143.654 1 25.57 ? HMAB HEM 601 D 1 
HETATM 50 H HAA HEM . . . K 2 76.603 61.007 146.391 1 35.37 ? HAA HEM 601 D 1 
HETATM 51 H HAAA HEM . . . K 2 75.782 60.591 145.101 1 35.37 ? HAAA HEM 601 D 1 
HETATM 52 H HBA HEM . . . K 2 77.844 60.314 143.935 1 38.35 ? HBA HEM 601 D 1 
HETATM 53 H HBAA HEM . . . K 2 78.604 60.866 145.211 1 38.35 ? HBAA HEM 601 D 1 
HETATM 54 H HMB HEM . . . K 2 74.305 53.236 145.23 1 26.2 ? HMB HEM 601 D 1 
HETATM 55 H HMBA HEM . . . K 2 74.773 51.724 145.194 1 26.2 ? HMBA HEM 601 D 1 
HETATM 56 H HMBB HEM . . . K 2 75.356 52.758 144.146 1 26.2 ? HMBB HEM 601 D 1 
HETATM 57 H HAB HEM . . . K 2 77.405 50.089 147.407 1 31.13 ? HAB HEM 601 D 1 
HETATM 58 H HBB HEM . . . K 2 76.541 48.929 145.631 1 32.97 ? HBB HEM 601 D 1 
HETATM 59 H HBBA HEM . . . K 2 76.13 50.379 144.888 1 32.97 ? HBBA HEM 601 D 1 
HETATM 60 H HMC HEM . . . K 2 80.833 50.517 148.997 1 38.3 ? HMC HEM 601 D 1 
HETATM 61 H HMCA HEM . . . K 2 82.305 50.776 149.521 1 38.3 ? HMCA HEM 601 D 1 
HETATM 62 H HMCB HEM . . . K 2 82.012 50.749 147.965 1 38.3 ? HMCB HEM 601 D 1 
HETATM 63 H HAC HEM . . . K 2 84.233 54.247 149.692 1 40.59 ? HAC HEM 601 D 1 
HETATM 64 H HBC HEM . . . K 2 85.433 52.308 149.486 1 42.11 ? HBC HEM 601 D 1 
HETATM 65 H HBCA HEM . . . K 2 84.041 51.499 149.005 1 42.11 ? HBCA HEM 601 D 1 
HETATM 66 H HMD HEM . . . K 2 83.54 58.529 150.344 1 17.88 ? HMD HEM 601 D 1 
HETATM 67 H HMDA HEM . . . K 2 83.536 59.868 149.468 1 17.88 ? HMDA HEM 601 D 1 
HETATM 68 H HMDB HEM . . . K 2 84.122 58.512 148.854 1 17.88 ? HMDB HEM 601 D 1 
HETATM 69 H HAD HEM . . . K 2 81.819 61.233 149.061 1 11.66 ? HAD HEM 601 D 1 
HETATM 70 H HADA HEM . . . K 2 80.432 61.342 148.303 1 11.66 ? HADA HEM 601 D 1 
HETATM 71 H HBD HEM . . . K 2 81.526 60.899 146.255 1 8.84 ? HBD HEM 601 D 1 
HETATM 72 H HBDA HEM . . . K 2 82.911 60.822 147.02 1 8.84 ? HBDA HEM 601 D 1 
HETATM 73 H HHA HEM . . . K 2 78.68 60.135 147.532 1 28.22 ? HHA HEM 601 D 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           73 
#