data_6JNT # _model_server_result.job_id ummrW9PR8Id7GftAdiKT3Q _model_server_result.datetime_utc '2024-10-20 19:10:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 6JNT # _exptl.entry_id 6JNT _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JNT _cell.length_a 69.109 _cell.length_b 171.901 _cell.length_c 195.013 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 319 n n PA O2A NDP sing 320 n n PA O5B NDP sing 321 n n PA O3 NDP sing 322 n n O2A HOA2 NDP sing 323 n n O5B C5B NDP sing 324 n n C5B C4B NDP sing 325 n n C5B H51A NDP sing 326 n n C5B H52A NDP sing 327 n n C4B O4B NDP sing 328 n n C4B C3B NDP sing 329 n n C4B H4B NDP sing 330 n n O4B C1B NDP sing 331 n n C3B O3B NDP sing 332 n n C3B C2B NDP sing 333 n n C3B H3B NDP sing 334 n n O3B HO3A NDP sing 335 n n C2B O2B NDP sing 336 n n C2B C1B NDP sing 337 n n C2B H2B NDP sing 338 n n O2B P2B NDP sing 339 n n C1B N9A NDP sing 340 n n C1B H1B NDP sing 341 n n N9A C8A NDP sing 342 n y N9A C4A NDP sing 343 n y C8A N7A NDP doub 344 n y C8A H8A NDP sing 345 n n N7A C5A NDP sing 346 n y C5A C6A NDP sing 347 n y C5A C4A NDP doub 348 n y C6A N6A NDP sing 349 n n C6A N1A NDP doub 350 n y N6A H61A NDP sing 351 n n N6A H62A NDP sing 352 n n N1A C2A NDP sing 353 n y C2A N3A NDP doub 354 n y C2A H2A NDP sing 355 n n N3A C4A NDP sing 356 n y O3 PN NDP sing 357 n n PN O1N NDP doub 358 n n PN O2N NDP sing 359 n n PN O5D NDP sing 360 n n O2N H21N NDP sing 361 n n O5D C5D NDP sing 362 n n C5D C4D NDP sing 363 n n C5D H51N NDP sing 364 n n C5D H52N NDP sing 365 n n C4D O4D NDP sing 366 n n C4D C3D NDP sing 367 n n C4D H4D NDP sing 368 n n O4D C1D NDP sing 369 n n C3D O3D NDP sing 370 n n C3D C2D NDP sing 371 n n C3D H3D NDP sing 372 n n O3D HO3N NDP sing 373 n n C2D O2D NDP sing 374 n n C2D C1D NDP sing 375 n n C2D H2D NDP sing 376 n n O2D HO2N NDP sing 377 n n C1D N1N NDP sing 378 n n C1D H1D NDP sing 379 n n N1N C2N NDP sing 380 n n N1N C6N NDP sing 381 n n C2N C3N NDP doub 382 n n C2N H2N NDP sing 383 n n C3N C7N NDP sing 384 n n C3N C4N NDP sing 385 n n C7N O7N NDP doub 386 n n C7N N7N NDP sing 387 n n N7N H71N NDP sing 388 n n N7N H72N NDP sing 389 n n C4N C5N NDP sing 390 n n C4N H41N NDP sing 391 n n C4N H42N NDP sing 392 n n C5N C6N NDP doub 393 n n C5N H5N NDP sing 394 n n C6N H6N NDP sing 395 n n P2B O1X NDP doub 396 n n P2B O2X NDP sing 397 n n P2B O3X NDP sing 398 n n O2X HOP2 NDP sing 399 n n O3X HOP3 NDP sing 400 n n # _atom_sites.entry_id 6JNT _atom_sites.fract_transf_matrix[1][1] 0.01447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 527 HEM HEM . F 3 NDP A 1 602 528 NDP NDP . G 2 HEM B 1 601 527 HEM HEM . H 3 NDP B 1 602 528 NDP NDP . I 2 HEM C 1 601 527 HEM HEM . J 3 NDP C 1 602 528 NDP NDP . K 2 HEM D 1 601 527 HEM HEM . L 3 NDP D 1 602 528 NDP NDP . M 4 HOH A 1 701 8 HOH HOH . M 4 HOH A 2 702 20 HOH HOH . M 4 HOH A 3 703 17 HOH HOH . M 4 HOH A 4 704 5 HOH HOH . M 4 HOH A 5 705 1 HOH HOH . N 4 HOH B 1 701 6 HOH HOH . N 4 HOH B 2 702 13 HOH HOH . N 4 HOH B 3 703 14 HOH HOH . N 4 HOH B 4 704 4 HOH HOH . N 4 HOH B 5 705 18 HOH HOH . O 4 HOH C 1 701 11 HOH HOH . O 4 HOH C 2 702 3 HOH HOH . O 4 HOH C 3 703 12 HOH HOH . O 4 HOH C 4 704 15 HOH HOH . O 4 HOH C 5 705 16 HOH HOH . P 4 HOH D 1 701 9 HOH HOH . P 4 HOH D 2 702 7 HOH HOH . P 4 HOH D 3 703 10 HOH HOH . P 4 HOH D 4 704 2 HOH HOH . P 4 HOH D 5 705 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 3 55.978 105.421 103.739 1 24.23 ? PA NDP 602 B 1 HETATM 2 O O1A NDP . . . H 3 55.449 105.053 102.396 1 23.8 ? O1A NDP 602 B 1 HETATM 3 O O2A NDP . . . H 3 57.156 106.34 103.889 1 23.9 ? O2A NDP 602 B 1 HETATM 4 O O5B NDP . . . H 3 56.234 104.061 104.62 1 26.76 ? O5B NDP 602 B 1 HETATM 5 C C5B NDP . . . H 3 56.514 103.084 103.674 1 28.78 ? C5B NDP 602 B 1 HETATM 6 C C4B NDP . . . H 3 57.212 101.909 104.372 1 29.01 ? C4B NDP 602 B 1 HETATM 7 O O4B NDP . . . H 3 56.38 100.767 104.097 1 24.26 ? O4B NDP 602 B 1 HETATM 8 C C3B NDP . . . H 3 58.593 101.668 103.831 1 33.01 ? C3B NDP 602 B 1 HETATM 9 O O3B NDP . . . H 3 59.537 101.759 104.878 1 38.98 ? O3B NDP 602 B 1 HETATM 10 C C2B NDP . . . H 3 58.567 100.199 103.365 1 27.75 ? C2B NDP 602 B 1 HETATM 11 O O2B NDP . . . H 3 59.601 99.458 103.81 1 27.33 ? O2B NDP 602 B 1 HETATM 12 C C1B NDP . . . H 3 57.239 99.688 104.045 1 21.99 ? C1B NDP 602 B 1 HETATM 13 N N9A NDP . . . H 3 56.606 98.647 103.223 1 16.17 ? N9A NDP 602 B 1 HETATM 14 C C8A NDP . . . H 3 56.404 98.637 101.826 1 14.46 ? C8A NDP 602 B 1 HETATM 15 N N7A NDP . . . H 3 55.765 97.523 101.38 1 13.8 ? N7A NDP 602 B 1 HETATM 16 C C5A NDP . . . H 3 55.557 96.781 102.533 1 13.75 ? C5A NDP 602 B 1 HETATM 17 C C6A NDP . . . H 3 54.967 95.54 102.748 1 16.09 ? C6A NDP 602 B 1 HETATM 18 N N6A NDP . . . H 3 54.458 94.832 101.694 1 18.86 ? N6A NDP 602 B 1 HETATM 19 N N1A NDP . . . H 3 54.87 94.993 104.001 1 14.54 ? N1A NDP 602 B 1 HETATM 20 C C2A NDP . . . H 3 55.4 95.764 105.014 1 12.39 ? C2A NDP 602 B 1 HETATM 21 N N3A NDP . . . H 3 55.992 96.951 104.975 1 11.91 ? N3A NDP 602 B 1 HETATM 22 C C4A NDP . . . H 3 56.07 97.461 103.694 1 13.46 ? C4A NDP 602 B 1 HETATM 23 O O3 NDP . . . H 3 54.693 106.222 104.362 1 24.38 ? O3 NDP 602 B 1 HETATM 24 P PN NDP . . . H 3 54.884 106.305 105.94 1 24.03 ? PN NDP 602 B 1 HETATM 25 O O1N NDP . . . H 3 53.933 107.303 106.469 1 22.03 ? O1N NDP 602 B 1 HETATM 26 O O2N NDP . . . H 3 56.326 106.205 106.387 1 25.78 ? O2N NDP 602 B 1 HETATM 27 O O5D NDP . . . H 3 54.209 104.856 106.648 1 23.64 ? O5D NDP 602 B 1 HETATM 28 C C5D NDP . . . H 3 52.901 104.798 106.153 1 25.96 ? C5D NDP 602 B 1 HETATM 29 C C4D NDP . . . H 3 52.366 103.411 106.432 1 30.32 ? C4D NDP 602 B 1 HETATM 30 O O4D NDP . . . H 3 53.378 102.535 105.925 1 33.66 ? O4D NDP 602 B 1 HETATM 31 C C3D NDP . . . H 3 52.219 103.144 107.909 1 31.89 ? C3D NDP 602 B 1 HETATM 32 O O3D NDP . . . H 3 50.891 103.416 108.25 1 29.18 ? O3D NDP 602 B 1 HETATM 33 C C2D NDP . . . H 3 52.515 101.648 107.962 1 36.08 ? C2D NDP 602 B 1 HETATM 34 O O2D NDP . . . H 3 51.35 100.868 107.811 1 39.13 ? O2D NDP 602 B 1 HETATM 35 C C1D NDP . . . H 3 53.379 101.397 106.732 1 35.61 ? C1D NDP 602 B 1 HETATM 36 N N1N NDP . . . H 3 54.806 101.197 107.195 1 35.17 ? N1N NDP 602 B 1 HETATM 37 C C2N NDP . . . H 3 55.413 102.224 107.918 1 33.2 ? C2N NDP 602 B 1 HETATM 38 C C3N NDP . . . H 3 56.709 102.118 108.332 1 29.69 ? C3N NDP 602 B 1 HETATM 39 C C7N NDP . . . H 3 57.225 103.228 109.09 1 29.34 ? C7N NDP 602 B 1 HETATM 40 O O7N NDP . . . H 3 58.011 103.138 110.04 1 28.28 ? O7N NDP 602 B 1 HETATM 41 N N7N NDP . . . H 3 56.77 104.43 108.696 1 30.26 ? N7N NDP 602 B 1 HETATM 42 C C4N NDP . . . H 3 57.551 100.923 108.024 1 27.68 ? C4N NDP 602 B 1 HETATM 43 C C5N NDP . . . H 3 56.817 99.878 107.292 1 29.88 ? C5N NDP 602 B 1 HETATM 44 C C6N NDP . . . H 3 55.537 100.019 106.922 1 33.56 ? C6N NDP 602 B 1 HETATM 45 P P2B NDP . . . H 3 61.121 99.709 102.83 1 26.28 ? P2B NDP 602 B 1 HETATM 46 O O1X NDP . . . H 3 60.468 100.013 101.518 1 26.82 ? O1X NDP 602 B 1 HETATM 47 O O2X NDP . . . H 3 61.855 98.369 102.954 1 25.35 ? O2X NDP 602 B 1 HETATM 48 O O3X NDP . . . H 3 61.653 100.87 103.621 1 26.11 ? O3X NDP 602 B 1 HETATM 49 H H51A NDP . . . H 3 55.698 102.787 103.242 1 34.54 ? H51A NDP 602 B 1 HETATM 50 H H52A NDP . . . H 3 57.077 103.445 102.971 1 34.54 ? H52A NDP 602 B 1 HETATM 51 H H4B NDP . . . H 3 57.29 102.09 105.322 1 34.81 ? H4B NDP 602 B 1 HETATM 52 H H3B NDP . . . H 3 58.787 102.246 103.076 1 39.61 ? H3B NDP 602 B 1 HETATM 53 H HO3A NDP . . . H 3 60.193 102.195 104.558 1 46.77 ? HO3A NDP 602 B 1 HETATM 54 H H2B NDP . . . H 3 58.422 100.213 102.406 1 33.3 ? H2B NDP 602 B 1 HETATM 55 H H1B NDP . . . H 3 57.39 99.34 104.938 1 26.39 ? H1B NDP 602 B 1 HETATM 56 H H8A NDP . . . H 3 56.692 99.34 101.29 1 17.35 ? H8A NDP 602 B 1 HETATM 57 H H61A NDP . . . H 3 54.857 94.867 100.933 1 22.63 ? H61A NDP 602 B 1 HETATM 58 H H62A NDP . . . H 3 53.747 94.362 101.809 1 22.63 ? H62A NDP 602 B 1 HETATM 59 H H2A NDP . . . H 3 55.325 95.376 105.856 1 14.87 ? H2A NDP 602 B 1 HETATM 60 H H51N NDP . . . H 3 52.322 105.46 106.561 1 31.16 ? H51N NDP 602 B 1 HETATM 61 H H52N NDP . . . H 3 52.857 104.98 105.201 1 31.16 ? H52N NDP 602 B 1 HETATM 62 H H4D NDP . . . H 3 51.491 103.274 106.036 1 36.39 ? H4D NDP 602 B 1 HETATM 63 H H3D NDP . . . H 3 52.85 103.651 108.444 1 38.27 ? H3D NDP 602 B 1 HETATM 64 H HO3N NDP . . . H 3 50.911 103.686 109.055 1 35.02 ? HO3N NDP 602 B 1 HETATM 65 H H2D NDP . . . H 3 53.008 101.431 108.769 1 43.3 ? H2D NDP 602 B 1 HETATM 66 H HO2N NDP . . . H 3 51.622 100.095 107.584 1 46.96 ? HO2N NDP 602 B 1 HETATM 67 H H1D NDP . . . H 3 53.036 100.655 106.209 1 42.74 ? H1D NDP 602 B 1 HETATM 68 H H2N NDP . . . H 3 54.908 102.981 108.107 1 39.84 ? H2N NDP 602 B 1 HETATM 69 H H71N NDP . . . H 3 57.029 105.139 109.108 1 36.31 ? H71N NDP 602 B 1 HETATM 70 H H72N NDP . . . H 3 56.223 104.482 108.035 1 36.31 ? H72N NDP 602 B 1 HETATM 71 H H41N NDP . . . H 3 58.323 101.185 107.497 1 33.21 ? H41N NDP 602 B 1 HETATM 72 H H42N NDP . . . H 3 57.901 100.54 108.843 1 33.21 ? H42N NDP 602 B 1 HETATM 73 H H5N NDP . . . H 3 57.264 99.09 107.081 1 35.86 ? H5N NDP 602 B 1 HETATM 74 H H6N NDP . . . H 3 55.078 99.347 106.471 1 40.27 ? H6N NDP 602 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 346 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 74 #