data_6JNT # _model_server_result.job_id yaRYfZelmiWObGd3FzHIGA _model_server_result.datetime_utc '2024-10-20 19:12:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 6JNT # _exptl.entry_id 6JNT _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JNT _cell.length_a 69.109 _cell.length_b 171.901 _cell.length_c 195.013 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 319 n n PA O2A NDP sing 320 n n PA O5B NDP sing 321 n n PA O3 NDP sing 322 n n O2A HOA2 NDP sing 323 n n O5B C5B NDP sing 324 n n C5B C4B NDP sing 325 n n C5B H51A NDP sing 326 n n C5B H52A NDP sing 327 n n C4B O4B NDP sing 328 n n C4B C3B NDP sing 329 n n C4B H4B NDP sing 330 n n O4B C1B NDP sing 331 n n C3B O3B NDP sing 332 n n C3B C2B NDP sing 333 n n C3B H3B NDP sing 334 n n O3B HO3A NDP sing 335 n n C2B O2B NDP sing 336 n n C2B C1B NDP sing 337 n n C2B H2B NDP sing 338 n n O2B P2B NDP sing 339 n n C1B N9A NDP sing 340 n n C1B H1B NDP sing 341 n n N9A C8A NDP sing 342 n y N9A C4A NDP sing 343 n y C8A N7A NDP doub 344 n y C8A H8A NDP sing 345 n n N7A C5A NDP sing 346 n y C5A C6A NDP sing 347 n y C5A C4A NDP doub 348 n y C6A N6A NDP sing 349 n n C6A N1A NDP doub 350 n y N6A H61A NDP sing 351 n n N6A H62A NDP sing 352 n n N1A C2A NDP sing 353 n y C2A N3A NDP doub 354 n y C2A H2A NDP sing 355 n n N3A C4A NDP sing 356 n y O3 PN NDP sing 357 n n PN O1N NDP doub 358 n n PN O2N NDP sing 359 n n PN O5D NDP sing 360 n n O2N H21N NDP sing 361 n n O5D C5D NDP sing 362 n n C5D C4D NDP sing 363 n n C5D H51N NDP sing 364 n n C5D H52N NDP sing 365 n n C4D O4D NDP sing 366 n n C4D C3D NDP sing 367 n n C4D H4D NDP sing 368 n n O4D C1D NDP sing 369 n n C3D O3D NDP sing 370 n n C3D C2D NDP sing 371 n n C3D H3D NDP sing 372 n n O3D HO3N NDP sing 373 n n C2D O2D NDP sing 374 n n C2D C1D NDP sing 375 n n C2D H2D NDP sing 376 n n O2D HO2N NDP sing 377 n n C1D N1N NDP sing 378 n n C1D H1D NDP sing 379 n n N1N C2N NDP sing 380 n n N1N C6N NDP sing 381 n n C2N C3N NDP doub 382 n n C2N H2N NDP sing 383 n n C3N C7N NDP sing 384 n n C3N C4N NDP sing 385 n n C7N O7N NDP doub 386 n n C7N N7N NDP sing 387 n n N7N H71N NDP sing 388 n n N7N H72N NDP sing 389 n n C4N C5N NDP sing 390 n n C4N H41N NDP sing 391 n n C4N H42N NDP sing 392 n n C5N C6N NDP doub 393 n n C5N H5N NDP sing 394 n n C6N H6N NDP sing 395 n n P2B O1X NDP doub 396 n n P2B O2X NDP sing 397 n n P2B O3X NDP sing 398 n n O2X HOP2 NDP sing 399 n n O3X HOP3 NDP sing 400 n n # _atom_sites.entry_id 6JNT _atom_sites.fract_transf_matrix[1][1] 0.01447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 527 HEM HEM . F 3 NDP A 1 602 528 NDP NDP . G 2 HEM B 1 601 527 HEM HEM . H 3 NDP B 1 602 528 NDP NDP . I 2 HEM C 1 601 527 HEM HEM . J 3 NDP C 1 602 528 NDP NDP . K 2 HEM D 1 601 527 HEM HEM . L 3 NDP D 1 602 528 NDP NDP . M 4 HOH A 1 701 8 HOH HOH . M 4 HOH A 2 702 20 HOH HOH . M 4 HOH A 3 703 17 HOH HOH . M 4 HOH A 4 704 5 HOH HOH . M 4 HOH A 5 705 1 HOH HOH . N 4 HOH B 1 701 6 HOH HOH . N 4 HOH B 2 702 13 HOH HOH . N 4 HOH B 3 703 14 HOH HOH . N 4 HOH B 4 704 4 HOH HOH . N 4 HOH B 5 705 18 HOH HOH . O 4 HOH C 1 701 11 HOH HOH . O 4 HOH C 2 702 3 HOH HOH . O 4 HOH C 3 703 12 HOH HOH . O 4 HOH C 4 704 15 HOH HOH . O 4 HOH C 5 705 16 HOH HOH . P 4 HOH D 1 701 9 HOH HOH . P 4 HOH D 2 702 7 HOH HOH . P 4 HOH D 3 703 10 HOH HOH . P 4 HOH D 4 704 2 HOH HOH . P 4 HOH D 5 705 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . J 3 57.145 35.182 103.348 1 17.47 ? PA NDP 602 C 1 HETATM 2 O O1A NDP . . . J 3 56.603 35.383 101.976 1 16.59 ? O1A NDP 602 C 1 HETATM 3 O O2A NDP . . . J 3 56.786 33.978 104.166 1 18.23 ? O2A NDP 602 C 1 HETATM 4 O O5B NDP . . . J 3 56.884 36.529 104.232 1 20.76 ? O5B NDP 602 C 1 HETATM 5 C C5B NDP . . . J 3 57.348 37.558 103.422 1 22.38 ? C5B NDP 602 C 1 HETATM 6 C C4B NDP . . . J 3 56.982 38.853 104.108 1 22.53 ? C4B NDP 602 C 1 HETATM 7 O O4B NDP . . . J 3 57.434 39.963 103.354 1 21.59 ? O4B NDP 602 C 1 HETATM 8 C C3B NDP . . . J 3 55.463 38.997 104.288 1 22.91 ? C3B NDP 602 C 1 HETATM 9 O O3B NDP . . . J 3 55.121 38.73 105.613 1 23.05 ? O3B NDP 602 C 1 HETATM 10 C C2B NDP . . . J 3 55.191 40.496 103.977 1 23.17 ? C2B NDP 602 C 1 HETATM 11 O O2B NDP . . . J 3 54.603 41.165 104.984 1 27.44 ? O2B NDP 602 C 1 HETATM 12 C C1B NDP . . . J 3 56.636 41.053 103.782 1 20.54 ? C1B NDP 602 C 1 HETATM 13 N N9A NDP . . . J 3 56.722 42.102 102.749 1 18.59 ? N9A NDP 602 C 1 HETATM 14 C C8A NDP . . . J 3 56.042 42.185 101.525 1 18.73 ? C8A NDP 602 C 1 HETATM 15 N N7A NDP . . . J 3 56.362 43.287 100.806 1 18.63 ? N7A NDP 602 C 1 HETATM 16 C C5A NDP . . . J 3 57.3 43.944 101.614 1 20.18 ? C5A NDP 602 C 1 HETATM 17 C C6A NDP . . . J 3 58.014 45.14 101.445 1 26.09 ? C6A NDP 602 C 1 HETATM 18 N N6A NDP . . . J 3 57.843 45.896 100.319 1 30.12 ? N6A NDP 602 C 1 HETATM 19 N N1A NDP . . . J 3 58.892 45.597 102.386 1 24.38 ? N1A NDP 602 C 1 HETATM 20 C C2A NDP . . . J 3 59.013 44.784 103.498 1 21.76 ? C2A NDP 602 C 1 HETATM 21 N N3A NDP . . . J 3 58.412 43.633 103.808 1 19.65 ? N3A NDP 602 C 1 HETATM 22 C C4A NDP . . . J 3 57.537 43.222 102.826 1 18.87 ? C4A NDP 602 C 1 HETATM 23 O O3 NDP . . . J 3 58.763 35.045 102.992 1 16.96 ? O3 NDP 602 C 1 HETATM 24 P PN NDP . . . J 3 59.53 34.4 104.228 1 16.04 ? PN NDP 602 C 1 HETATM 25 O O1N NDP . . . J 3 60.223 33.186 103.751 1 14.47 ? O1N NDP 602 C 1 HETATM 26 O O2N NDP . . . J 3 58.791 34.476 105.547 1 14.33 ? O2N NDP 602 C 1 HETATM 27 O O5D NDP . . . J 3 60.891 35.445 104.597 1 22.62 ? O5D NDP 602 C 1 HETATM 28 C C5D NDP . . . J 3 61.634 35.754 103.44 1 26.42 ? C5D NDP 602 C 1 HETATM 29 C C4D NDP . . . J 3 61.831 37.247 103.396 1 27.55 ? C4D NDP 602 C 1 HETATM 30 O O4D NDP . . . J 3 60.704 37.948 103.856 1 26.76 ? O4D NDP 602 C 1 HETATM 31 C C3D NDP . . . J 3 62.957 37.539 104.455 1 28.41 ? C3D NDP 602 C 1 HETATM 32 O O3D NDP . . . J 3 64.192 37.434 103.845 1 27.21 ? O3D NDP 602 C 1 HETATM 33 C C2D NDP . . . J 3 62.617 38.969 104.858 1 29.58 ? C2D NDP 602 C 1 HETATM 34 O O2D NDP . . . J 3 63.39 39.913 104.152 1 33.32 ? O2D NDP 602 C 1 HETATM 35 C C1D NDP . . . J 3 61.178 39.158 104.389 1 27.54 ? C1D NDP 602 C 1 HETATM 36 N N1N NDP . . . J 3 60.333 39.456 105.589 1 26.96 ? N1N NDP 602 C 1 HETATM 37 C C2N NDP . . . J 3 60.148 38.454 106.523 1 24.39 ? C2N NDP 602 C 1 HETATM 38 C C3N NDP . . . J 3 59.302 38.618 107.582 1 23.24 ? C3N NDP 602 C 1 HETATM 39 C C7N NDP . . . J 3 59.169 37.509 108.524 1 17.4 ? C7N NDP 602 C 1 HETATM 40 O O7N NDP . . . J 3 58.724 37.597 109.668 1 13.4 ? O7N NDP 602 C 1 HETATM 41 N N7N NDP . . . J 3 59.582 36.327 108.061 1 16.99 ? N7N NDP 602 C 1 HETATM 42 C C4N NDP . . . J 3 58.536 39.888 107.785 1 27.83 ? C4N NDP 602 C 1 HETATM 43 C C5N NDP . . . J 3 58.896 40.931 106.808 1 29.98 ? C5N NDP 602 C 1 HETATM 44 C C6N NDP . . . J 3 59.738 40.707 105.793 1 29.36 ? C6N NDP 602 C 1 HETATM 45 P P2B NDP . . . J 3 52.753 41.105 104.907 1 33.31 ? P2B NDP 602 C 1 HETATM 46 O O1X NDP . . . J 3 52.627 41.054 103.415 1 34.33 ? O1X NDP 602 C 1 HETATM 47 O O2X NDP . . . J 3 52.35 42.406 105.609 1 34.14 ? O2X NDP 602 C 1 HETATM 48 O O3X NDP . . . J 3 52.547 39.822 105.661 1 35.95 ? O3X NDP 602 C 1 HETATM 49 H H51A NDP . . . J 3 58.307 37.492 103.293 1 26.85 ? H51A NDP 602 C 1 HETATM 50 H H52A NDP . . . J 3 56.952 37.509 102.538 1 26.85 ? H52A NDP 602 C 1 HETATM 51 H H4B NDP . . . J 3 57.436 38.828 104.965 1 27.03 ? H4B NDP 602 C 1 HETATM 52 H H3B NDP . . . J 3 54.961 38.457 103.658 1 27.49 ? H3B NDP 602 C 1 HETATM 53 H HO3A NDP . . . J 3 54.672 38.008 105.593 1 27.66 ? HO3A NDP 602 C 1 HETATM 54 H H2B NDP . . . J 3 54.752 40.52 103.112 1 27.8 ? H2B NDP 602 C 1 HETATM 55 H H1B NDP . . . J 3 56.973 41.432 104.609 1 24.64 ? H1B NDP 602 C 1 HETATM 56 H H8A NDP . . . J 3 55.436 41.53 101.262 1 22.47 ? H8A NDP 602 C 1 HETATM 57 H H61A NDP . . . J 3 57.225 46.495 100.305 1 36.15 ? H61A NDP 602 C 1 HETATM 58 H H62A NDP . . . J 3 58.355 45.762 99.641 1 36.15 ? H62A NDP 602 C 1 HETATM 59 H H2A NDP . . . J 3 59.618 45.104 104.127 1 26.12 ? H2A NDP 602 C 1 HETATM 60 H H51N NDP . . . J 3 61.19 35.461 102.628 1 31.71 ? H51N NDP 602 C 1 HETATM 61 H H52N NDP . . . J 3 62.497 35.311 103.427 1 31.71 ? H52N NDP 602 C 1 HETATM 62 H H4D NDP . . . J 3 62.022 37.539 102.49 1 33.06 ? H4D NDP 602 C 1 HETATM 63 H H3D NDP . . . J 3 62.898 36.94 105.215 1 34.1 ? H3D NDP 602 C 1 HETATM 64 H HO3N NDP . . . J 3 64.61 36.832 104.275 1 32.65 ? HO3N NDP 602 C 1 HETATM 65 H H2D NDP . . . J 3 62.678 39.069 105.821 1 35.49 ? H2D NDP 602 C 1 HETATM 66 H HO2N NDP . . . J 3 62.976 40.651 104.231 1 39.98 ? HO2N NDP 602 C 1 HETATM 67 H H1D NDP . . . J 3 61.118 39.839 103.7 1 33.05 ? H1D NDP 602 C 1 HETATM 68 H H2N NDP . . . J 3 60.62 37.661 106.405 1 29.27 ? H2N NDP 602 C 1 HETATM 69 H H71N NDP . . . J 3 59.536 35.632 108.565 1 20.38 ? H71N NDP 602 C 1 HETATM 70 H H72N NDP . . . J 3 59.891 36.268 107.26 1 20.38 ? H72N NDP 602 C 1 HETATM 71 H H41N NDP . . . J 3 57.583 39.719 107.722 1 33.4 ? H41N NDP 602 C 1 HETATM 72 H H42N NDP . . . J 3 58.689 40.234 108.678 1 33.4 ? H42N NDP 602 C 1 HETATM 73 H H5N NDP . . . J 3 58.52 41.776 106.905 1 35.98 ? H5N NDP 602 C 1 HETATM 74 H H6N NDP . . . J 3 59.963 41.371 105.183 1 35.23 ? H6N NDP 602 C 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 74 #