data_6JNT
#
_model_server_result.job_id            fNJwg8EgquUuL63D4d38bA 
_model_server_result.datetime_utc      '2024-10-20 19:14:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jnt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    6JNT 
#
_exptl.entry_id    6JNT 
_exptl.method      'ELECTRON CRYSTALLOGRAPHY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JNT 
_cell.length_a            69.109 
_cell.length_b            171.901 
_cell.length_c            195.013 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JNT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 319 n n 
PA O2A NDP sing 320 n n 
PA O5B NDP sing 321 n n 
PA O3 NDP sing 322 n n 
O2A HOA2 NDP sing 323 n n 
O5B C5B NDP sing 324 n n 
C5B C4B NDP sing 325 n n 
C5B H51A NDP sing 326 n n 
C5B H52A NDP sing 327 n n 
C4B O4B NDP sing 328 n n 
C4B C3B NDP sing 329 n n 
C4B H4B NDP sing 330 n n 
O4B C1B NDP sing 331 n n 
C3B O3B NDP sing 332 n n 
C3B C2B NDP sing 333 n n 
C3B H3B NDP sing 334 n n 
O3B HO3A NDP sing 335 n n 
C2B O2B NDP sing 336 n n 
C2B C1B NDP sing 337 n n 
C2B H2B NDP sing 338 n n 
O2B P2B NDP sing 339 n n 
C1B N9A NDP sing 340 n n 
C1B H1B NDP sing 341 n n 
N9A C8A NDP sing 342 n y 
N9A C4A NDP sing 343 n y 
C8A N7A NDP doub 344 n y 
C8A H8A NDP sing 345 n n 
N7A C5A NDP sing 346 n y 
C5A C6A NDP sing 347 n y 
C5A C4A NDP doub 348 n y 
C6A N6A NDP sing 349 n n 
C6A N1A NDP doub 350 n y 
N6A H61A NDP sing 351 n n 
N6A H62A NDP sing 352 n n 
N1A C2A NDP sing 353 n y 
C2A N3A NDP doub 354 n y 
C2A H2A NDP sing 355 n n 
N3A C4A NDP sing 356 n y 
O3 PN NDP sing 357 n n 
PN O1N NDP doub 358 n n 
PN O2N NDP sing 359 n n 
PN O5D NDP sing 360 n n 
O2N H21N NDP sing 361 n n 
O5D C5D NDP sing 362 n n 
C5D C4D NDP sing 363 n n 
C5D H51N NDP sing 364 n n 
C5D H52N NDP sing 365 n n 
C4D O4D NDP sing 366 n n 
C4D C3D NDP sing 367 n n 
C4D H4D NDP sing 368 n n 
O4D C1D NDP sing 369 n n 
C3D O3D NDP sing 370 n n 
C3D C2D NDP sing 371 n n 
C3D H3D NDP sing 372 n n 
O3D HO3N NDP sing 373 n n 
C2D O2D NDP sing 374 n n 
C2D C1D NDP sing 375 n n 
C2D H2D NDP sing 376 n n 
O2D HO2N NDP sing 377 n n 
C1D N1N NDP sing 378 n n 
C1D H1D NDP sing 379 n n 
N1N C2N NDP sing 380 n n 
N1N C6N NDP sing 381 n n 
C2N C3N NDP doub 382 n n 
C2N H2N NDP sing 383 n n 
C3N C7N NDP sing 384 n n 
C3N C4N NDP sing 385 n n 
C7N O7N NDP doub 386 n n 
C7N N7N NDP sing 387 n n 
N7N H71N NDP sing 388 n n 
N7N H72N NDP sing 389 n n 
C4N C5N NDP sing 390 n n 
C4N H41N NDP sing 391 n n 
C4N H42N NDP sing 392 n n 
C5N C6N NDP doub 393 n n 
C5N H5N NDP sing 394 n n 
C6N H6N NDP sing 395 n n 
P2B O1X NDP doub 396 n n 
P2B O2X NDP sing 397 n n 
P2B O3X NDP sing 398 n n 
O2X HOP2 NDP sing 399 n n 
O3X HOP3 NDP sing 400 n n 
#
_atom_sites.entry_id                     6JNT 
_atom_sites.fract_transf_matrix[1][1]    0.01447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005128 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 527 HEM HEM . 
F 3 NDP A 1 602 528 NDP NDP . 
G 2 HEM B 1 601 527 HEM HEM . 
H 3 NDP B 1 602 528 NDP NDP . 
I 2 HEM C 1 601 527 HEM HEM . 
J 3 NDP C 1 602 528 NDP NDP . 
K 2 HEM D 1 601 527 HEM HEM . 
L 3 NDP D 1 602 528 NDP NDP . 
M 4 HOH A 1 701 8 HOH HOH . 
M 4 HOH A 2 702 20 HOH HOH . 
M 4 HOH A 3 703 17 HOH HOH . 
M 4 HOH A 4 704 5 HOH HOH . 
M 4 HOH A 5 705 1 HOH HOH . 
N 4 HOH B 1 701 6 HOH HOH . 
N 4 HOH B 2 702 13 HOH HOH . 
N 4 HOH B 3 703 14 HOH HOH . 
N 4 HOH B 4 704 4 HOH HOH . 
N 4 HOH B 5 705 18 HOH HOH . 
O 4 HOH C 1 701 11 HOH HOH . 
O 4 HOH C 2 702 3 HOH HOH . 
O 4 HOH C 3 703 12 HOH HOH . 
O 4 HOH C 4 704 15 HOH HOH . 
O 4 HOH C 5 705 16 HOH HOH . 
P 4 HOH D 1 701 9 HOH HOH . 
P 4 HOH D 2 702 7 HOH HOH . 
P 4 HOH D 3 703 10 HOH HOH . 
P 4 HOH D 4 704 2 HOH HOH . 
P 4 HOH D 5 705 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . L 3 97.035 43.017 161.427 1 14.89 ? PA NDP 602 D 1 
HETATM 2 O O1A NDP . . . L 3 97.413 43.325 162.834 1 13.23 ? O1A NDP 602 D 1 
HETATM 3 O O2A NDP . . . L 3 98.054 42.58 160.417 1 11.81 ? O2A NDP 602 D 1 
HETATM 4 O O5B NDP . . . L 3 96.133 44.252 160.814 1 20.04 ? O5B NDP 602 D 1 
HETATM 5 C C5B NDP . . . L 3 95.613 44.904 161.939 1 24.31 ? C5B NDP 602 D 1 
HETATM 6 C C4B NDP . . . L 3 94.86 46.133 161.441 1 27.17 ? C4B NDP 602 D 1 
HETATM 7 O O4B NDP . . . L 3 93.871 46.549 162.395 1 24.81 ? O4B NDP 602 D 1 
HETATM 8 C C3B NDP . . . L 3 95.821 47.324 161.193 1 31.76 ? C3B NDP 602 D 1 
HETATM 9 O O3B NDP . . . L 3 95.86 47.647 159.847 1 36.36 ? O3B NDP 602 D 1 
HETATM 10 C C2B NDP . . . L 3 95.138 48.5 161.975 1 30.3 ? C2B NDP 602 D 1 
HETATM 11 O O2B NDP . . . L 3 95.116 49.655 161.321 1 35.18 ? O2B NDP 602 D 1 
HETATM 12 C C1B NDP . . . L 3 93.66 47.923 162.156 1 23.02 ? C1B NDP 602 D 1 
HETATM 13 N N9A NDP . . . L 3 92.973 48.543 163.287 1 15.22 ? N9A NDP 602 D 1 
HETATM 14 C C8A NDP . . . L 3 93.385 48.648 164.626 1 12.65 ? C8A NDP 602 D 1 
HETATM 15 N N7A NDP . . . L 3 92.5 49.295 165.413 1 10.94 ? N7A NDP 602 D 1 
HETATM 16 C C5A NDP . . . L 3 91.452 49.635 164.529 1 9.7 ? C5A NDP 602 D 1 
HETATM 17 C C6A NDP . . . L 3 90.232 50.308 164.724 1 8.58 ? C6A NDP 602 D 1 
HETATM 18 N N6A NDP . . . L 3 89.895 50.768 165.968 1 8.56 ? N6A NDP 602 D 1 
HETATM 19 N N1A NDP . . . L 3 89.359 50.516 163.703 1 8.51 ? N1A NDP 602 D 1 
HETATM 20 C C2A NDP . . . L 3 89.756 50.029 162.489 1 8.53 ? C2A NDP 602 D 1 
HETATM 21 N N3A NDP . . . L 3 90.864 49.373 162.132 1 8.62 ? N3A NDP 602 D 1 
HETATM 22 C C4A NDP . . . L 3 91.73 49.177 163.201 1 9 ? C4A NDP 602 D 1 
HETATM 23 O O3 NDP . . . L 3 96.054 41.684 161.682 1 15.76 ? O3 NDP 602 D 1 
HETATM 24 P PN NDP . . . L 3 95.534 41.095 160.279 1 13.83 ? PN NDP 602 D 1 
HETATM 25 O O1N NDP . . . L 3 95.423 39.628 160.409 1 10.04 ? O1N NDP 602 D 1 
HETATM 26 O O2N NDP . . . L 3 96.088 41.796 159.057 1 14.83 ? O2N NDP 602 D 1 
HETATM 27 O O5D NDP . . . L 3 93.842 41.534 160.157 1 11.89 ? O5D NDP 602 D 1 
HETATM 28 C C5D NDP . . . L 3 93.127 40.941 161.218 1 9.78 ? C5D NDP 602 D 1 
HETATM 29 C C4D NDP . . . L 3 91.973 41.875 161.576 1 9.46 ? C4D NDP 602 D 1 
HETATM 30 O O4D NDP . . . L 3 92.338 43.25 161.519 1 9.3 ? O4D NDP 602 D 1 
HETATM 31 C C3D NDP . . . L 3 90.924 41.646 160.426 1 9.43 ? C3D NDP 602 D 1 
HETATM 32 O O3D NDP . . . L 3 90.064 40.626 160.801 1 9.54 ? O3D NDP 602 D 1 
HETATM 33 C C2D NDP . . . L 3 90.247 43.004 160.37 1 9.24 ? C2D NDP 602 D 1 
HETATM 34 O O2D NDP . . . L 3 89.088 43.021 161.172 1 9.24 ? O2D NDP 602 D 1 
HETATM 35 C C1D NDP . . . L 3 91.244 43.959 161.008 1 9.17 ? C1D NDP 602 D 1 
HETATM 36 N N1N NDP . . . L 3 91.803 44.859 159.919 1 9.06 ? N1N NDP 602 D 1 
HETATM 37 C C2N NDP . . . L 3 92.39 44.276 158.805 1 9.12 ? C2N NDP 602 D 1 
HETATM 38 C C3N NDP . . . L 3 92.897 45.035 157.804 1 9.04 ? C3N NDP 602 D 1 
HETATM 39 C C7N NDP . . . L 3 93.49 44.334 156.682 1 9.11 ? C7N NDP 602 D 1 
HETATM 40 O O7N NDP . . . L 3 93.276 44.582 155.488 1 9.06 ? O7N NDP 602 D 1 
HETATM 41 N N7N NDP . . . L 3 94.354 43.353 156.948 1 9.26 ? N7N NDP 602 D 1 
HETATM 42 C C4N NDP . . . L 3 92.869 46.54 157.836 1 8.88 ? C4N NDP 602 D 1 
HETATM 43 C C5N NDP . . . L 3 92.275 47.062 159.082 1 8.82 ? C5N NDP 602 D 1 
HETATM 44 C C6N NDP . . . L 3 91.775 46.256 160.033 1 8.91 ? C6N NDP 602 D 1 
HETATM 45 P P2B NDP . . . L 3 96.719 50.539 161.483 1 40.8 ? P2B NDP 602 D 1 
HETATM 46 O O1X NDP . . . L 3 97.034 50.105 162.881 1 43.7 ? O1X NDP 602 D 1 
HETATM 47 O O2X NDP . . . L 3 96.358 52.013 161.274 1 40.39 ? O2X NDP 602 D 1 
HETATM 48 O O3X NDP . . . L 3 97.442 49.841 160.364 1 42.86 ? O3X NDP 602 D 1 
HETATM 49 H H51A NDP . . . L 3 95.025 44.315 162.437 1 29.17 ? H51A NDP 602 D 1 
HETATM 50 H H52A NDP . . . L 3 96.323 45.156 162.549 1 29.17 ? H52A NDP 602 D 1 
HETATM 51 H H4B NDP . . . L 3 94.418 45.858 160.622 1 32.6 ? H4B NDP 602 D 1 
HETATM 52 H H3B NDP . . . L 3 96.707 47.162 161.554 1 38.11 ? H3B NDP 602 D 1 
HETATM 53 H HO3A NDP . . . L 3 96.667 47.531 159.606 1 43.63 ? HO3A NDP 602 D 1 
HETATM 54 H H2B NDP . . . L 3 95.535 48.524 162.86 1 36.36 ? H2B NDP 602 D 1 
HETATM 55 H H1B NDP . . . L 3 93.077 48.055 161.392 1 27.62 ? H1B NDP 602 D 1 
HETATM 56 H H8A NDP . . . L 3 94.196 48.295 164.912 1 15.18 ? H8A NDP 602 D 1 
HETATM 57 H H61A NDP . . . L 3 89.84 50.211 166.62 1 10.27 ? H61A NDP 602 D 1 
HETATM 58 H H62A NDP . . . L 3 89.745 51.608 166.078 1 10.27 ? H62A NDP 602 D 1 
HETATM 59 H H2A NDP . . . L 3 89.144 50.188 161.807 1 10.24 ? H2A NDP 602 D 1 
HETATM 60 H H51N NDP . . . L 3 93.68 40.791 162.001 1 11.74 ? H51N NDP 602 D 1 
HETATM 61 H H52N NDP . . . L 3 92.779 40.065 160.987 1 11.74 ? H52N NDP 602 D 1 
HETATM 62 H H4D NDP . . . L 3 91.65 41.707 162.475 1 11.35 ? H4D NDP 602 D 1 
HETATM 63 H H3D NDP . . . L 3 91.354 41.441 159.581 1 11.31 ? H3D NDP 602 D 1 
HETATM 64 H HO3N NDP . . . L 3 89.689 40.366 160.083 1 11.45 ? HO3N NDP 602 D 1 
HETATM 65 H H2D NDP . . . L 3 90.086 43.271 159.452 1 11.09 ? H2D NDP 602 D 1 
HETATM 66 H HO2N NDP . . . L 3 88.613 43.66 160.873 1 11.08 ? HO2N NDP 602 D 1 
HETATM 67 H H1D NDP . . . L 3 90.828 44.44 161.74 1 11.01 ? H1D NDP 602 D 1 
HETATM 68 H H2N NDP . . . L 3 92.423 43.348 158.768 1 10.95 ? H2N NDP 602 D 1 
HETATM 69 H H71N NDP . . . L 3 94.532 43.151 157.765 1 11.11 ? H71N NDP 602 D 1 
HETATM 70 H H72N NDP . . . L 3 94.728 42.928 156.301 1 11.11 ? H72N NDP 602 D 1 
HETATM 71 H H41N NDP . . . L 3 92.365 46.884 157.082 1 10.65 ? H41N NDP 602 D 1 
HETATM 72 H H42N NDP . . . L 3 93.766 46.896 157.745 1 10.65 ? H42N NDP 602 D 1 
HETATM 73 H H5N NDP . . . L 3 92.248 47.983 159.208 1 10.59 ? H5N NDP 602 D 1 
HETATM 74 H H6N NDP . . . L 3 91.389 46.594 160.809 1 10.7 ? H6N NDP 602 D 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           49 
_model_server_stats.create_model_time_ms    278 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           74 
#