data_6JNU # _model_server_result.job_id voX92uRzSEWkOHvphUFrgQ _model_server_result.datetime_utc '2025-04-07 15:27:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6JNU # _exptl.entry_id 6JNU _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JNU _cell.length_a 68.939 _cell.length_b 172.142 _cell.length_c 201.384 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6JNU _atom_sites.fract_transf_matrix[1][1] 0.014506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 527 HEM HEM . F 3 NDP A 1 602 528 NDP NDP . G 2 HEM B 1 601 527 HEM HEM . H 3 NDP B 1 602 528 NDP NDP . I 2 HEM C 1 601 527 HEM HEM . J 3 NDP C 1 602 528 NDP NDP . K 2 HEM D 1 601 527 HEM HEM . L 3 NDP D 1 602 528 NDP NDP . M 4 HOH A 1 701 12 HOH HOH . M 4 HOH A 2 702 20 HOH HOH . M 4 HOH A 3 703 29 HOH HOH . M 4 HOH A 4 704 26 HOH HOH . M 4 HOH A 5 705 35 HOH HOH . M 4 HOH A 6 706 4 HOH HOH . N 4 HOH B 1 701 11 HOH HOH . N 4 HOH B 2 702 31 HOH HOH . N 4 HOH B 3 703 6 HOH HOH . N 4 HOH B 4 704 30 HOH HOH . N 4 HOH B 5 705 9 HOH HOH . N 4 HOH B 6 706 21 HOH HOH . N 4 HOH B 7 707 13 HOH HOH . N 4 HOH B 8 708 34 HOH HOH . O 4 HOH C 1 701 33 HOH HOH . O 4 HOH C 2 702 18 HOH HOH . O 4 HOH C 3 703 15 HOH HOH . O 4 HOH C 4 704 5 HOH HOH . O 4 HOH C 5 705 36 HOH HOH . O 4 HOH C 6 706 7 HOH HOH . O 4 HOH C 7 707 16 HOH HOH . O 4 HOH C 8 708 25 HOH HOH . O 4 HOH C 9 709 17 HOH HOH . O 4 HOH C 10 710 24 HOH HOH . P 4 HOH D 1 701 10 HOH HOH . P 4 HOH D 2 702 32 HOH HOH . P 4 HOH D 3 703 28 HOH HOH . P 4 HOH D 4 704 23 HOH HOH . P 4 HOH D 5 705 27 HOH HOH . P 4 HOH D 6 706 3 HOH HOH . P 4 HOH D 7 707 19 HOH HOH . P 4 HOH D 8 708 22 HOH HOH . P 4 HOH D 9 709 1 HOH HOH . P 4 HOH D 10 710 37 HOH HOH . P 4 HOH D 11 711 8 HOH HOH . P 4 HOH D 12 712 14 HOH HOH . P 4 HOH D 13 713 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 61.411 81.545 157.374 1 10.73 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . E 2 62.804 85.216 154.541 1 11.65 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . E 2 61.918 88.254 158.208 1 17.29 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . E 2 59.532 84.732 160.525 1 11.77 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . E 2 61.926 82.237 156.296 1 9.27 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . E 2 62.47 81.674 155.065 1 6.62 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . E 2 62.859 82.696 154.284 1 6.56 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . E 2 62.568 83.933 154.985 1 9 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . E 2 63.469 82.617 152.869 1 4.22 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . E 2 62.571 80.165 154.72 1 5.62 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . E 2 61.152 79.71 154.405 1 5.16 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . E 2 61.065 78.253 154.034 1 4.24 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . E 2 60.002 77.636 154.326 1 4.26 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . E 2 62.043 77.709 153.454 1 4.21 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . E 2 62.663 86.368 155.274 1 11.72 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . E 2 62.926 87.703 154.796 1 13.57 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . E 2 62.698 88.555 155.809 1 11.77 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . E 2 62.262 87.779 156.955 1 13.67 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . E 2 63.396 88.046 153.361 1 16.32 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . E 2 62.801 90.103 155.788 1 8.41 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . E 2 62.707 90.801 154.646 1 7.75 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . E 2 61.072 87.615 159.099 1 19.56 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . E 2 60.213 88.221 160.099 1 22.15 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . E 2 59.566 87.244 160.753 1 22.96 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . E 2 59.967 85.984 160.164 1 17.54 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . E 2 60.1 89.732 160.376 1 21.19 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . E 2 58.522 87.374 161.891 1 24.21 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . E 2 57.724 88.443 161.982 1 23.7 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . E 2 59.863 83.555 159.889 1 8.56 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . E 2 59.478 82.229 160.304 1 10.35 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . E 2 59.99 81.357 159.458 1 11.96 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . E 2 60.725 82.086 158.444 1 9.89 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . E 2 58.638 81.883 161.537 1 10.56 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . E 2 59.821 79.828 159.547 1 15.8 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . E 2 58.505 79.408 158.894 1 13.64 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . E 2 58.466 77.911 158.762 1 7.64 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . E 2 58.147 77.438 157.648 1 5.8 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . E 2 58.758 77.209 159.76 1 4.24 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . E 2 62.012 83.616 156.212 1 12.42 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . E 2 62.27 86.453 156.589 1 13.47 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . E 2 60.883 86.249 159.174 1 18.56 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . E 2 60.62 83.43 158.742 1 10.47 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . E 2 61.601 84.962 157.835 1 10.48 ? FE HEM 601 A 1 HETATM 44 H HHB HEM . . . E 2 63.102 85.316 153.613 1 14.24 ? HHB HEM 601 A 1 HETATM 45 H HHC HEM . . . E 2 62.304 89.11 158.487 1 21.01 ? HHC HEM 601 A 1 HETATM 46 H HHD HEM . . . E 2 58.935 84.67 161.299 1 14.38 ? HHD HEM 601 A 1 HETATM 47 H HMA HEM . . . E 2 64.136 81.899 152.84 1 3.75 ? HMA HEM 601 A 1 HETATM 48 H HMAA HEM . . . E 2 63.898 83.47 152.65 1 3.75 ? HMAA HEM 601 A 1 HETATM 49 H HMAB HEM . . . E 2 62.762 82.43 152.217 1 3.75 ? HMAB HEM 601 A 1 HETATM 50 H HAA HEM . . . E 2 62.924 79.67 155.475 1 7 ? HAA HEM 601 A 1 HETATM 51 H HAAA HEM . . . E 2 63.146 80.034 153.949 1 7 ? HAAA HEM 601 A 1 HETATM 52 H HBA HEM . . . E 2 60.817 80.238 153.663 1 6.45 ? HBA HEM 601 A 1 HETATM 53 H HBAA HEM . . . E 2 60.599 79.863 155.187 1 6.45 ? HBAA HEM 601 A 1 HETATM 54 H HMB HEM . . . E 2 64.004 87.359 153.046 1 19.84 ? HMB HEM 601 A 1 HETATM 55 H HMBA HEM . . . E 2 63.851 88.903 153.365 1 19.84 ? HMBA HEM 601 A 1 HETATM 56 H HMBB HEM . . . E 2 62.627 88.092 152.771 1 19.84 ? HMBB HEM 601 A 1 HETATM 57 H HAB HEM . . . E 2 62.935 90.573 156.614 1 10.35 ? HAB HEM 601 A 1 HETATM 58 H HBB HEM . . . E 2 62.775 91.768 154.662 1 9.56 ? HBB HEM 601 A 1 HETATM 59 H HBBA HEM . . . E 2 62.572 90.338 153.805 1 9.56 ? HBBA HEM 601 A 1 HETATM 60 H HMC HEM . . . E 2 60.988 90.12 160.42 1 25.69 ? HMC HEM 601 A 1 HETATM 61 H HMCA HEM . . . E 2 59.644 89.873 161.22 1 25.69 ? HMCA HEM 601 A 1 HETATM 62 H HMCB HEM . . . E 2 59.598 90.155 159.663 1 25.69 ? HMCB HEM 601 A 1 HETATM 63 H HAC HEM . . . E 2 58.447 86.673 162.542 1 29.31 ? HAC HEM 601 A 1 HETATM 64 H HBC HEM . . . E 2 57.077 88.505 162.703 1 28.7 ? HBC HEM 601 A 1 HETATM 65 H HBCA HEM . . . E 2 57.792 89.156 161.329 1 28.7 ? HBCA HEM 601 A 1 HETATM 66 H HMD HEM . . . E 2 59.082 82.223 162.342 1 12.94 ? HMD HEM 601 A 1 HETATM 67 H HMDA HEM . . . E 2 58.539 80.911 161.604 1 12.94 ? HMDA HEM 601 A 1 HETATM 68 H HMDB HEM . . . E 2 57.752 82.296 161.456 1 12.94 ? HMDB HEM 601 A 1 HETATM 69 H HAD HEM . . . E 2 59.817 79.56 160.479 1 19.22 ? HAD HEM 601 A 1 HETATM 70 H HADA HEM . . . E 2 60.559 79.397 159.088 1 19.22 ? HADA HEM 601 A 1 HETATM 71 H HBD HEM . . . E 2 58.437 79.811 158.014 1 16.63 ? HBD HEM 601 A 1 HETATM 72 H HBDA HEM . . . E 2 57.763 79.703 159.443 1 16.63 ? HBDA HEM 601 A 1 HETATM 73 H HHA HEM . . . E 2 61.545 80.574 157.38 1 13.14 ? HHA HEM 601 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 73 #