data_6JNU # _model_server_result.job_id P2ZU8DvSuqwAJy-R4UkbKw _model_server_result.datetime_utc '2025-04-09 10:48:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 6JNU # _exptl.entry_id 6JNU _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JNU _cell.length_a 68.939 _cell.length_b 172.142 _cell.length_c 201.384 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 319 n n PA O2A NDP sing 320 n n PA O5B NDP sing 321 n n PA O3 NDP sing 322 n n O2A HOA2 NDP sing 323 n n O5B C5B NDP sing 324 n n C5B C4B NDP sing 325 n n C5B H51A NDP sing 326 n n C5B H52A NDP sing 327 n n C4B O4B NDP sing 328 n n C4B C3B NDP sing 329 n n C4B H4B NDP sing 330 n n O4B C1B NDP sing 331 n n C3B O3B NDP sing 332 n n C3B C2B NDP sing 333 n n C3B H3B NDP sing 334 n n O3B HO3A NDP sing 335 n n C2B O2B NDP sing 336 n n C2B C1B NDP sing 337 n n C2B H2B NDP sing 338 n n O2B P2B NDP sing 339 n n C1B N9A NDP sing 340 n n C1B H1B NDP sing 341 n n N9A C8A NDP sing 342 n y N9A C4A NDP sing 343 n y C8A N7A NDP doub 344 n y C8A H8A NDP sing 345 n n N7A C5A NDP sing 346 n y C5A C6A NDP sing 347 n y C5A C4A NDP doub 348 n y C6A N6A NDP sing 349 n n C6A N1A NDP doub 350 n y N6A H61A NDP sing 351 n n N6A H62A NDP sing 352 n n N1A C2A NDP sing 353 n y C2A N3A NDP doub 354 n y C2A H2A NDP sing 355 n n N3A C4A NDP sing 356 n y O3 PN NDP sing 357 n n PN O1N NDP doub 358 n n PN O2N NDP sing 359 n n PN O5D NDP sing 360 n n O2N H21N NDP sing 361 n n O5D C5D NDP sing 362 n n C5D C4D NDP sing 363 n n C5D H51N NDP sing 364 n n C5D H52N NDP sing 365 n n C4D O4D NDP sing 366 n n C4D C3D NDP sing 367 n n C4D H4D NDP sing 368 n n O4D C1D NDP sing 369 n n C3D O3D NDP sing 370 n n C3D C2D NDP sing 371 n n C3D H3D NDP sing 372 n n O3D HO3N NDP sing 373 n n C2D O2D NDP sing 374 n n C2D C1D NDP sing 375 n n C2D H2D NDP sing 376 n n O2D HO2N NDP sing 377 n n C1D N1N NDP sing 378 n n C1D H1D NDP sing 379 n n N1N C2N NDP sing 380 n n N1N C6N NDP sing 381 n n C2N C3N NDP doub 382 n n C2N H2N NDP sing 383 n n C3N C7N NDP sing 384 n n C3N C4N NDP sing 385 n n C7N O7N NDP doub 386 n n C7N N7N NDP sing 387 n n N7N H71N NDP sing 388 n n N7N H72N NDP sing 389 n n C4N C5N NDP sing 390 n n C4N H41N NDP sing 391 n n C4N H42N NDP sing 392 n n C5N C6N NDP doub 393 n n C5N H5N NDP sing 394 n n C6N H6N NDP sing 395 n n P2B O1X NDP doub 396 n n P2B O2X NDP sing 397 n n P2B O3X NDP sing 398 n n O2X HOP2 NDP sing 399 n n O3X HOP3 NDP sing 400 n n # _atom_sites.entry_id 6JNU _atom_sites.fract_transf_matrix[1][1] 0.014506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 527 HEM HEM . F 3 NDP A 1 602 528 NDP NDP . G 2 HEM B 1 601 527 HEM HEM . H 3 NDP B 1 602 528 NDP NDP . I 2 HEM C 1 601 527 HEM HEM . J 3 NDP C 1 602 528 NDP NDP . K 2 HEM D 1 601 527 HEM HEM . L 3 NDP D 1 602 528 NDP NDP . M 4 HOH A 1 701 12 HOH HOH . M 4 HOH A 2 702 20 HOH HOH . M 4 HOH A 3 703 29 HOH HOH . M 4 HOH A 4 704 26 HOH HOH . M 4 HOH A 5 705 35 HOH HOH . M 4 HOH A 6 706 4 HOH HOH . N 4 HOH B 1 701 11 HOH HOH . N 4 HOH B 2 702 31 HOH HOH . N 4 HOH B 3 703 6 HOH HOH . N 4 HOH B 4 704 30 HOH HOH . N 4 HOH B 5 705 9 HOH HOH . N 4 HOH B 6 706 21 HOH HOH . N 4 HOH B 7 707 13 HOH HOH . N 4 HOH B 8 708 34 HOH HOH . O 4 HOH C 1 701 33 HOH HOH . O 4 HOH C 2 702 18 HOH HOH . O 4 HOH C 3 703 15 HOH HOH . O 4 HOH C 4 704 5 HOH HOH . O 4 HOH C 5 705 36 HOH HOH . O 4 HOH C 6 706 7 HOH HOH . O 4 HOH C 7 707 16 HOH HOH . O 4 HOH C 8 708 25 HOH HOH . O 4 HOH C 9 709 17 HOH HOH . O 4 HOH C 10 710 24 HOH HOH . P 4 HOH D 1 701 10 HOH HOH . P 4 HOH D 2 702 32 HOH HOH . P 4 HOH D 3 703 28 HOH HOH . P 4 HOH D 4 704 23 HOH HOH . P 4 HOH D 5 705 27 HOH HOH . P 4 HOH D 6 706 3 HOH HOH . P 4 HOH D 7 707 19 HOH HOH . P 4 HOH D 8 708 22 HOH HOH . P 4 HOH D 9 709 1 HOH HOH . P 4 HOH D 10 710 37 HOH HOH . P 4 HOH D 11 711 8 HOH HOH . P 4 HOH D 12 712 14 HOH HOH . P 4 HOH D 13 713 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . J 3 57.18 35.168 107.078 1 19.48 ? PA NDP 602 C 1 HETATM 2 O O1A NDP . . . J 3 56.753 35.361 105.666 1 15.73 ? O1A NDP 602 C 1 HETATM 3 O O2A NDP . . . J 3 56.786 33.935 107.84 1 18.41 ? O2A NDP 602 C 1 HETATM 4 O O5B NDP . . . J 3 56.771 36.516 107.962 1 26.51 ? O5B NDP 602 C 1 HETATM 5 C C5B NDP . . . J 3 57.37 37.543 107.28 1 29.44 ? C5B NDP 602 C 1 HETATM 6 C C4B NDP . . . J 3 56.974 38.796 108.04 1 29.5 ? C4B NDP 602 C 1 HETATM 7 O O4B NDP . . . J 3 57.394 39.967 107.35 1 28.43 ? O4B NDP 602 C 1 HETATM 8 C C3B NDP . . . J 3 55.469 38.93 108.236 1 29.28 ? C3B NDP 602 C 1 HETATM 9 O O3B NDP . . . J 3 55.173 38.638 109.569 1 29.43 ? O3B NDP 602 C 1 HETATM 10 C C2B NDP . . . J 3 55.115 40.424 107.983 1 30.38 ? C2B NDP 602 C 1 HETATM 11 O O2B NDP . . . J 3 54.587 41.053 109.038 1 34.46 ? O2B NDP 602 C 1 HETATM 12 C C1B NDP . . . J 3 56.502 41.006 107.796 1 28.45 ? C1B NDP 602 C 1 HETATM 13 N N9A NDP . . . J 3 56.602 42.046 106.768 1 29.66 ? N9A NDP 602 C 1 HETATM 14 C C8A NDP . . . J 3 56.004 42.078 105.507 1 30.94 ? C8A NDP 602 C 1 HETATM 15 N N7A NDP . . . J 3 56.302 43.18 104.796 1 31.76 ? N7A NDP 602 C 1 HETATM 16 C C5A NDP . . . J 3 57.163 43.893 105.669 1 32.4 ? C5A NDP 602 C 1 HETATM 17 C C6A NDP . . . J 3 57.83 45.121 105.554 1 35.43 ? C6A NDP 602 C 1 HETATM 18 N N6A NDP . . . J 3 57.686 45.868 104.419 1 38.91 ? N6A NDP 602 C 1 HETATM 19 N N1A NDP . . . J 3 58.619 45.611 106.555 1 33.34 ? N1A NDP 602 C 1 HETATM 20 C C2A NDP . . . J 3 58.696 44.798 107.669 1 29.98 ? C2A NDP 602 C 1 HETATM 21 N N3A NDP . . . J 3 58.139 43.618 107.946 1 29.91 ? N3A NDP 602 C 1 HETATM 22 C C4A NDP . . . J 3 57.355 43.183 106.894 1 30.4 ? C4A NDP 602 C 1 HETATM 23 O O3 NDP . . . J 3 58.821 35.097 106.834 1 20.2 ? O3 NDP 602 C 1 HETATM 24 P PN NDP . . . J 3 59.495 34.416 108.074 1 21.61 ? PN NDP 602 C 1 HETATM 25 O O1N NDP . . . J 3 60.228 33.222 107.616 1 20 ? O1N NDP 602 C 1 HETATM 26 O O2N NDP . . . J 3 58.754 34.438 109.392 1 26.06 ? O2N NDP 602 C 1 HETATM 27 O O5D NDP . . . J 3 60.862 35.483 108.494 1 21.8 ? O5D NDP 602 C 1 HETATM 28 C C5D NDP . . . J 3 61.619 35.794 107.343 1 21.3 ? C5D NDP 602 C 1 HETATM 29 C C4D NDP . . . J 3 61.837 37.289 107.309 1 19.67 ? C4D NDP 602 C 1 HETATM 30 O O4D NDP . . . J 3 60.713 37.98 107.727 1 19.14 ? O4D NDP 602 C 1 HETATM 31 C C3D NDP . . . J 3 62.894 37.518 108.434 1 18.2 ? C3D NDP 602 C 1 HETATM 32 O O3D NDP . . . J 3 64.153 37.429 107.874 1 15.79 ? O3D NDP 602 C 1 HETATM 33 C C2D NDP . . . J 3 62.566 38.94 108.877 1 19.9 ? C2D NDP 602 C 1 HETATM 34 O O2D NDP . . . J 3 63.405 39.899 108.273 1 23.06 ? O2D NDP 602 C 1 HETATM 35 C C1D NDP . . . J 3 61.187 39.155 108.291 1 18.91 ? C1D NDP 602 C 1 HETATM 36 N N1N NDP . . . J 3 60.253 39.43 109.448 1 19.49 ? N1N NDP 602 C 1 HETATM 37 C C2N NDP . . . J 3 60.031 38.405 110.37 1 18.78 ? C2N NDP 602 C 1 HETATM 38 C C3N NDP . . . J 3 59.258 38.612 111.479 1 20.43 ? C3N NDP 602 C 1 HETATM 39 C C7N NDP . . . J 3 59.071 37.533 112.419 1 17.54 ? C7N NDP 602 C 1 HETATM 40 O O7N NDP . . . J 3 58.55 37.64 113.527 1 17.07 ? O7N NDP 602 C 1 HETATM 41 N N7N NDP . . . J 3 59.521 36.366 112.012 1 17.08 ? N7N NDP 602 C 1 HETATM 42 C C4N NDP . . . J 3 58.601 39.921 111.737 1 24.72 ? C4N NDP 602 C 1 HETATM 43 C C5N NDP . . . J 3 58.876 40.913 110.683 1 25.61 ? C5N NDP 602 C 1 HETATM 44 C C6N NDP . . . J 3 59.652 40.66 109.635 1 23.14 ? C6N NDP 602 C 1 HETATM 45 P P2B NDP . . . J 3 52.718 41.19 108.934 1 39.98 ? P2B NDP 602 C 1 HETATM 46 O O1X NDP . . . J 3 52.624 41.094 107.443 1 40.1 ? O1X NDP 602 C 1 HETATM 47 O O2X NDP . . . J 3 52.424 42.548 109.585 1 39.2 ? O2X NDP 602 C 1 HETATM 48 O O3X NDP . . . J 3 52.41 39.951 109.727 1 43.81 ? O3X NDP 602 C 1 HETATM 49 H H51A NDP . . . J 3 58.333 37.434 107.25 1 35.59 ? H51A NDP 602 C 1 HETATM 50 H H52A NDP . . . J 3 57.072 37.577 106.357 1 35.59 ? H52A NDP 602 C 1 HETATM 51 H H4B NDP . . . J 3 57.436 38.706 108.888 1 35.66 ? H4B NDP 602 C 1 HETATM 52 H H3B NDP . . . J 3 54.98 38.406 107.582 1 35.4 ? H3B NDP 602 C 1 HETATM 53 H HO3A NDP . . . J 3 54.573 38.036 109.544 1 35.57 ? HO3A NDP 602 C 1 HETATM 54 H H2B NDP . . . J 3 54.62 40.451 107.149 1 36.71 ? H2B NDP 602 C 1 HETATM 55 H H1B NDP . . . J 3 56.774 41.377 108.65 1 34.41 ? H1B NDP 602 C 1 HETATM 56 H H8A NDP . . . J 3 55.456 41.386 105.216 1 37.39 ? H8A NDP 602 C 1 HETATM 57 H H61A NDP . . . J 3 57.07 46.467 104.386 1 46.95 ? H61A NDP 602 C 1 HETATM 58 H H62A NDP . . . J 3 58.215 45.729 103.755 1 46.95 ? H62A NDP 602 C 1 HETATM 59 H H2A NDP . . . J 3 59.237 45.148 108.339 1 36.24 ? H2A NDP 602 C 1 HETATM 60 H H51N NDP . . . J 3 61.179 35.512 106.526 1 25.82 ? H51N NDP 602 C 1 HETATM 61 H H52N NDP . . . J 3 62.477 35.341 107.334 1 25.82 ? H52N NDP 602 C 1 HETATM 62 H H4D NDP . . . J 3 62.073 37.602 106.422 1 23.87 ? H4D NDP 602 C 1 HETATM 63 H H3D NDP . . . J 3 62.779 36.889 109.164 1 22.1 ? H3D NDP 602 C 1 HETATM 64 H HO3N NDP . . . J 3 64.611 36.956 108.411 1 19.21 ? HO3N NDP 602 C 1 HETATM 65 H H2D NDP . . . J 3 62.563 39.009 109.844 1 24.14 ? H2D NDP 602 C 1 HETATM 66 H HO2N NDP . . . J 3 64.11 39.478 108.053 1 27.94 ? HO2N NDP 602 C 1 HETATM 67 H H1D NDP . . . J 3 61.21 39.839 107.603 1 22.95 ? H1D NDP 602 C 1 HETATM 68 H H2N NDP . . . J 3 60.425 37.579 110.206 1 22.8 ? H2N NDP 602 C 1 HETATM 69 H H71N NDP . . . J 3 59.442 35.678 112.522 1 20.76 ? H71N NDP 602 C 1 HETATM 70 H H72N NDP . . . J 3 59.892 36.298 111.239 1 20.76 ? H72N NDP 602 C 1 HETATM 71 H H41N NDP . . . J 3 57.641 39.806 111.812 1 29.93 ? H41N NDP 602 C 1 HETATM 72 H H42N NDP . . . J 3 58.895 40.283 112.588 1 29.93 ? H42N NDP 602 C 1 HETATM 73 H H5N NDP . . . J 3 58.485 41.754 110.76 1 30.99 ? H5N NDP 602 C 1 HETATM 74 H H6N NDP . . . J 3 59.822 41.301 108.983 1 28.03 ? H6N NDP 602 C 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 74 #