data_6JNU # _model_server_result.job_id OqFyB3vztxyI_JStODFGIg _model_server_result.datetime_utc '2025-04-21 22:19:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":602}' # _entry.id 6JNU # _exptl.entry_id 6JNU _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JNU _cell.length_a 68.939 _cell.length_b 172.142 _cell.length_c 201.384 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 319 n n PA O2A NDP sing 320 n n PA O5B NDP sing 321 n n PA O3 NDP sing 322 n n O2A HOA2 NDP sing 323 n n O5B C5B NDP sing 324 n n C5B C4B NDP sing 325 n n C5B H51A NDP sing 326 n n C5B H52A NDP sing 327 n n C4B O4B NDP sing 328 n n C4B C3B NDP sing 329 n n C4B H4B NDP sing 330 n n O4B C1B NDP sing 331 n n C3B O3B NDP sing 332 n n C3B C2B NDP sing 333 n n C3B H3B NDP sing 334 n n O3B HO3A NDP sing 335 n n C2B O2B NDP sing 336 n n C2B C1B NDP sing 337 n n C2B H2B NDP sing 338 n n O2B P2B NDP sing 339 n n C1B N9A NDP sing 340 n n C1B H1B NDP sing 341 n n N9A C8A NDP sing 342 n y N9A C4A NDP sing 343 n y C8A N7A NDP doub 344 n y C8A H8A NDP sing 345 n n N7A C5A NDP sing 346 n y C5A C6A NDP sing 347 n y C5A C4A NDP doub 348 n y C6A N6A NDP sing 349 n n C6A N1A NDP doub 350 n y N6A H61A NDP sing 351 n n N6A H62A NDP sing 352 n n N1A C2A NDP sing 353 n y C2A N3A NDP doub 354 n y C2A H2A NDP sing 355 n n N3A C4A NDP sing 356 n y O3 PN NDP sing 357 n n PN O1N NDP doub 358 n n PN O2N NDP sing 359 n n PN O5D NDP sing 360 n n O2N H21N NDP sing 361 n n O5D C5D NDP sing 362 n n C5D C4D NDP sing 363 n n C5D H51N NDP sing 364 n n C5D H52N NDP sing 365 n n C4D O4D NDP sing 366 n n C4D C3D NDP sing 367 n n C4D H4D NDP sing 368 n n O4D C1D NDP sing 369 n n C3D O3D NDP sing 370 n n C3D C2D NDP sing 371 n n C3D H3D NDP sing 372 n n O3D HO3N NDP sing 373 n n C2D O2D NDP sing 374 n n C2D C1D NDP sing 375 n n C2D H2D NDP sing 376 n n O2D HO2N NDP sing 377 n n C1D N1N NDP sing 378 n n C1D H1D NDP sing 379 n n N1N C2N NDP sing 380 n n N1N C6N NDP sing 381 n n C2N C3N NDP doub 382 n n C2N H2N NDP sing 383 n n C3N C7N NDP sing 384 n n C3N C4N NDP sing 385 n n C7N O7N NDP doub 386 n n C7N N7N NDP sing 387 n n N7N H71N NDP sing 388 n n N7N H72N NDP sing 389 n n C4N C5N NDP sing 390 n n C4N H41N NDP sing 391 n n C4N H42N NDP sing 392 n n C5N C6N NDP doub 393 n n C5N H5N NDP sing 394 n n C6N H6N NDP sing 395 n n P2B O1X NDP doub 396 n n P2B O2X NDP sing 397 n n P2B O3X NDP sing 398 n n O2X HOP2 NDP sing 399 n n O3X HOP3 NDP sing 400 n n # _atom_sites.entry_id 6JNU _atom_sites.fract_transf_matrix[1][1] 0.014506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 527 HEM HEM . F 3 NDP A 1 602 528 NDP NDP . G 2 HEM B 1 601 527 HEM HEM . H 3 NDP B 1 602 528 NDP NDP . I 2 HEM C 1 601 527 HEM HEM . J 3 NDP C 1 602 528 NDP NDP . K 2 HEM D 1 601 527 HEM HEM . L 3 NDP D 1 602 528 NDP NDP . M 4 HOH A 1 701 12 HOH HOH . M 4 HOH A 2 702 20 HOH HOH . M 4 HOH A 3 703 29 HOH HOH . M 4 HOH A 4 704 26 HOH HOH . M 4 HOH A 5 705 35 HOH HOH . M 4 HOH A 6 706 4 HOH HOH . N 4 HOH B 1 701 11 HOH HOH . N 4 HOH B 2 702 31 HOH HOH . N 4 HOH B 3 703 6 HOH HOH . N 4 HOH B 4 704 30 HOH HOH . N 4 HOH B 5 705 9 HOH HOH . N 4 HOH B 6 706 21 HOH HOH . N 4 HOH B 7 707 13 HOH HOH . N 4 HOH B 8 708 34 HOH HOH . O 4 HOH C 1 701 33 HOH HOH . O 4 HOH C 2 702 18 HOH HOH . O 4 HOH C 3 703 15 HOH HOH . O 4 HOH C 4 704 5 HOH HOH . O 4 HOH C 5 705 36 HOH HOH . O 4 HOH C 6 706 7 HOH HOH . O 4 HOH C 7 707 16 HOH HOH . O 4 HOH C 8 708 25 HOH HOH . O 4 HOH C 9 709 17 HOH HOH . O 4 HOH C 10 710 24 HOH HOH . P 4 HOH D 1 701 10 HOH HOH . P 4 HOH D 2 702 32 HOH HOH . P 4 HOH D 3 703 28 HOH HOH . P 4 HOH D 4 704 23 HOH HOH . P 4 HOH D 5 705 27 HOH HOH . P 4 HOH D 6 706 3 HOH HOH . P 4 HOH D 7 707 19 HOH HOH . P 4 HOH D 8 708 22 HOH HOH . P 4 HOH D 9 709 1 HOH HOH . P 4 HOH D 10 710 37 HOH HOH . P 4 HOH D 11 711 8 HOH HOH . P 4 HOH D 12 712 14 HOH HOH . P 4 HOH D 13 713 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . L 3 96.827 42.976 166.377 1 11.89 ? PA NDP 602 D 1 HETATM 2 O O1A NDP . . . L 3 97.207 43.153 167.803 1 8.75 ? O1A NDP 602 D 1 HETATM 3 O O2A NDP . . . L 3 97.845 42.489 165.393 1 10.87 ? O2A NDP 602 D 1 HETATM 4 O O5B NDP . . . L 3 96.11 44.378 165.809 1 18.57 ? O5B NDP 602 D 1 HETATM 5 C C5B NDP . . . L 3 95.446 44.9 166.932 1 22.13 ? C5B NDP 602 D 1 HETATM 6 C C4B NDP . . . L 3 94.714 46.131 166.413 1 24.55 ? C4B NDP 602 D 1 HETATM 7 O O4B NDP . . . L 3 93.683 46.592 167.324 1 23.46 ? O4B NDP 602 D 1 HETATM 8 C C3B NDP . . . L 3 95.66 47.32 166.19 1 27.27 ? C3B NDP 602 D 1 HETATM 9 O O3B NDP . . . L 3 95.795 47.595 164.823 1 30.52 ? O3B NDP 602 D 1 HETATM 10 C C2B NDP . . . L 3 94.947 48.58 166.835 1 26.07 ? C2B NDP 602 D 1 HETATM 11 O O2B NDP . . . L 3 94.898 49.633 166.044 1 30.02 ? O2B NDP 602 D 1 HETATM 12 C C1B NDP . . . L 3 93.483 48.016 167.077 1 23.75 ? C1B NDP 602 D 1 HETATM 13 N N9A NDP . . . L 3 92.781 48.613 168.216 1 24.08 ? N9A NDP 602 D 1 HETATM 14 C C8A NDP . . . L 3 93.226 48.808 169.526 1 24.09 ? C8A NDP 602 D 1 HETATM 15 N N7A NDP . . . L 3 92.323 49.405 170.334 1 24.91 ? N7A NDP 602 D 1 HETATM 16 C C5A NDP . . . L 3 91.216 49.623 169.481 1 23.28 ? C5A NDP 602 D 1 HETATM 17 C C6A NDP . . . L 3 89.954 50.206 169.697 1 19.42 ? C6A NDP 602 D 1 HETATM 18 N N6A NDP . . . L 3 89.63 50.694 170.924 1 15.85 ? N6A NDP 602 D 1 HETATM 19 N N1A NDP . . . L 3 89.019 50.321 168.707 1 20.58 ? N1A NDP 602 D 1 HETATM 20 C C2A NDP . . . L 3 89.43 49.812 167.5 1 22.44 ? C2A NDP 602 D 1 HETATM 21 N N3A NDP . . . L 3 90.573 49.228 167.108 1 23.55 ? N3A NDP 602 D 1 HETATM 22 C C4A NDP . . . L 3 91.485 49.138 168.154 1 23.92 ? C4A NDP 602 D 1 HETATM 23 O O3 NDP . . . L 3 95.707 41.732 166.574 1 14.33 ? O3 NDP 602 D 1 HETATM 24 P PN NDP . . . L 3 95.258 41.14 165.176 1 14.79 ? PN NDP 602 D 1 HETATM 25 O O1N NDP . . . L 3 95.218 39.669 165.278 1 15.65 ? O1N NDP 602 D 1 HETATM 26 O O2N NDP . . . L 3 95.755 41.821 163.92 1 18.22 ? O2N NDP 602 D 1 HETATM 27 O O5D NDP . . . L 3 93.542 41.461 165.046 1 12.09 ? O5D NDP 602 D 1 HETATM 28 C C5D NDP . . . L 3 92.935 41.039 166.224 1 11.25 ? C5D NDP 602 D 1 HETATM 29 C C4D NDP . . . L 3 91.726 41.945 166.473 1 11.85 ? C4D NDP 602 D 1 HETATM 30 O O4D NDP . . . L 3 92.08 43.301 166.463 1 9.75 ? O4D NDP 602 D 1 HETATM 31 C C3D NDP . . . L 3 90.789 41.697 165.241 1 9.98 ? C3D NDP 602 D 1 HETATM 32 O O3D NDP . . . L 3 89.931 40.654 165.515 1 8.1 ? O3D NDP 602 D 1 HETATM 33 C C2D NDP . . . L 3 90.049 43.032 165.256 1 11.64 ? C2D NDP 602 D 1 HETATM 34 O O2D NDP . . . L 3 88.899 42.978 166.105 1 13.71 ? O2D NDP 602 D 1 HETATM 35 C C1D NDP . . . L 3 91.02 44.001 165.915 1 10.71 ? C1D NDP 602 D 1 HETATM 36 N N1N NDP . . . L 3 91.594 44.866 164.808 1 13.15 ? N1N NDP 602 D 1 HETATM 37 C C2N NDP . . . L 3 92.238 44.263 163.72 1 11.42 ? C2N NDP 602 D 1 HETATM 38 C C3N NDP . . . L 3 92.678 45.022 162.679 1 14.04 ? C3N NDP 602 D 1 HETATM 39 C C7N NDP . . . L 3 93.309 44.365 161.567 1 13.78 ? C7N NDP 602 D 1 HETATM 40 O O7N NDP . . . L 3 93.095 44.61 160.378 1 13.96 ? O7N NDP 602 D 1 HETATM 41 N N7N NDP . . . L 3 94.211 43.426 161.81 1 13.89 ? N7N NDP 602 D 1 HETATM 42 C C4N NDP . . . L 3 92.505 46.509 162.642 1 18.82 ? C4N NDP 602 D 1 HETATM 43 C C5N NDP . . . L 3 91.909 47.036 163.882 1 21.8 ? C5N NDP 602 D 1 HETATM 44 C C6N NDP . . . L 3 91.487 46.251 164.863 1 18.94 ? C6N NDP 602 D 1 HETATM 45 P P2B NDP . . . L 3 96.409 50.725 166.25 1 37.12 ? P2B NDP 602 D 1 HETATM 46 O O1X NDP . . . L 3 96.856 50.161 167.563 1 39.29 ? O1X NDP 602 D 1 HETATM 47 O O2X NDP . . . L 3 95.816 52.14 166.249 1 38.71 ? O2X NDP 602 D 1 HETATM 48 O O3X NDP . . . L 3 97.145 50.271 165.02 1 38.58 ? O3X NDP 602 D 1 HETATM 49 H H51A NDP . . . L 3 94.831 44.254 167.311 1 26.82 ? H51A NDP 602 D 1 HETATM 50 H H52A NDP . . . L 3 96.071 45.128 167.638 1 26.82 ? H52A NDP 602 D 1 HETATM 51 H H4B NDP . . . L 3 94.307 45.82 165.59 1 29.73 ? H4B NDP 602 D 1 HETATM 52 H H3B NDP . . . L 3 96.499 47.159 166.65 1 32.98 ? H3B NDP 602 D 1 HETATM 53 H HO3A NDP . . . L 3 96.591 47.377 164.622 1 36.89 ? HO3A NDP 602 D 1 HETATM 54 H H2B NDP . . . L 3 95.345 48.715 167.71 1 31.55 ? H2B NDP 602 D 1 HETATM 55 H H1B NDP . . . L 3 92.9 48.177 166.318 1 28.76 ? H1B NDP 602 D 1 HETATM 56 H H8A NDP . . . L 3 94.077 48.537 169.787 1 29.17 ? H8A NDP 602 D 1 HETATM 57 H H61A NDP . . . L 3 89.837 50.24 171.625 1 19.28 ? H61A NDP 602 D 1 HETATM 58 H H62A NDP . . . L 3 89.222 51.449 170.981 1 19.28 ? H62A NDP 602 D 1 HETATM 59 H H2A NDP . . . L 3 88.783 49.894 166.837 1 27.19 ? H2A NDP 602 D 1 HETATM 60 H H51N NDP . . . L 3 93.535 41.078 166.985 1 13.76 ? H51N NDP 602 D 1 HETATM 61 H H52N NDP . . . L 3 92.646 40.114 166.181 1 13.76 ? H52N NDP 602 D 1 HETATM 62 H H4D NDP . . . L 3 91.312 41.767 167.332 1 14.48 ? H4D NDP 602 D 1 HETATM 63 H H3D NDP . . . L 3 91.285 41.529 164.425 1 12.24 ? H3D NDP 602 D 1 HETATM 64 H HO3N NDP . . . L 3 89.644 40.388 164.761 1 9.98 ? HO3N NDP 602 D 1 HETATM 65 H H2D NDP . . . L 3 89.852 43.32 164.351 1 14.24 ? H2D NDP 602 D 1 HETATM 66 H HO2N NDP . . . L 3 88.355 43.55 165.788 1 16.71 ? HO2N NDP 602 D 1 HETATM 67 H H1D NDP . . . L 3 90.6 44.501 166.632 1 13.12 ? H1D NDP 602 D 1 HETATM 68 H H2N NDP . . . L 3 92.355 43.34 163.733 1 13.97 ? H2N NDP 602 D 1 HETATM 69 H H71N NDP . . . L 3 94.401 43.219 162.622 1 16.94 ? H71N NDP 602 D 1 HETATM 70 H H72N NDP . . . L 3 94.601 43.029 161.154 1 16.94 ? H72N NDP 602 D 1 HETATM 71 H H41N NDP . . . L 3 91.943 46.764 161.894 1 22.84 ? H41N NDP 602 D 1 HETATM 72 H H42N NDP . . . L 3 93.359 46.944 162.498 1 22.84 ? H42N NDP 602 D 1 HETATM 73 H H5N NDP . . . L 3 91.829 47.958 163.975 1 26.42 ? H5N NDP 602 D 1 HETATM 74 H H6N NDP . . . L 3 91.099 46.597 165.634 1 23 ? H6N NDP 602 D 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 74 #