data_6JO0
#
_model_server_result.job_id            5O3Ch5EbDzX9YR8y26PN6A 
_model_server_result.datetime_utc      '2024-12-18 10:20:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jo0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":316}' 
#
_entry.id    6JO0 
#
_exptl.entry_id    6JO0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              128.255 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            nonane 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JO0 
_cell.length_a            45.194 
_cell.length_b            57.832 
_cell.length_c            117.037 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JO0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 Q N N 
? 8 R N N 
? 8 S N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             218 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              211 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.425 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C9 H20' 
_chem_comp.formula_weight    128.255 
_chem_comp.id                DD9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              nonane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 DD9 sing 138 n n 
C1 H1 DD9 sing 139 n n 
C1 H1A DD9 sing 140 n n 
C1 H1B DD9 sing 141 n n 
C3 C2 DD9 sing 142 n n 
C2 H2 DD9 sing 143 n n 
C2 H2A DD9 sing 144 n n 
C4 C3 DD9 sing 145 n n 
C3 H3 DD9 sing 146 n n 
C3 H3A DD9 sing 147 n n 
C5 C4 DD9 sing 148 n n 
C4 H4 DD9 sing 149 n n 
C4 H4A DD9 sing 150 n n 
C6 C5 DD9 sing 151 n n 
C5 H5 DD9 sing 152 n n 
C5 H5A DD9 sing 153 n n 
C7 C6 DD9 sing 154 n n 
C6 H6 DD9 sing 155 n n 
C6 H6A DD9 sing 156 n n 
C8 C7 DD9 sing 157 n n 
C7 H7 DD9 sing 158 n n 
C7 H7A DD9 sing 159 n n 
C9 C8 DD9 sing 160 n n 
C8 H8 DD9 sing 161 n n 
C8 H8A DD9 sing 162 n n 
C9 H9 DD9 sing 163 n n 
C9 H9A DD9 sing 164 n n 
C9 H9B DD9 sing 165 n n 
#
_atom_sites.entry_id                     6JO0 
_atom_sites.fract_transf_matrix[1][1]    0.022127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017291 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008544 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 OCT A 1 302 1 OCT OCT . 
D 3 OCT A 1 303 2 OCT OCT . 
E 3 OCT A 1 304 3 OCT OCT . 
F 3 OCT A 1 305 4 OCT OCT . 
G 3 OCT A 1 306 5 OCT OCT . 
H 3 OCT A 1 307 6 OCT OCT . 
I 4 PO4 A 1 308 1 PO4 PO4 . 
J 5 HEX A 1 309 1 HEX HEX . 
K 5 HEX A 1 310 2 HEX HEX . 
L 5 HEX A 1 311 3 HEX HEX . 
M 5 HEX A 1 312 4 HEX HEX . 
N 5 HEX A 1 313 5 HEX HEX . 
O 6 D10 A 1 314 1 D10 D10 . 
P 7 D12 A 1 315 1 D12 D12 . 
Q 8 DD9 A 1 316 1 DD9 DD9 . 
R 8 DD9 A 1 317 2 DD9 DD9 . 
S 8 DD9 A 1 318 3 DD9 DD9 . 
T 9 OLB A 1 319 1 OLB OLB . 
U 10 HOH A 1 401 442 HOH HOH . 
U 10 HOH A 2 402 416 HOH HOH . 
U 10 HOH A 3 403 447 HOH HOH . 
U 10 HOH A 4 404 505 HOH HOH . 
U 10 HOH A 5 405 418 HOH HOH . 
U 10 HOH A 6 406 507 HOH HOH . 
U 10 HOH A 7 407 535 HOH HOH . 
U 10 HOH A 8 408 503 HOH HOH . 
U 10 HOH A 9 409 509 HOH HOH . 
U 10 HOH A 10 410 402 HOH HOH . 
U 10 HOH A 11 411 527 HOH HOH . 
U 10 HOH A 12 412 508 HOH HOH . 
U 10 HOH A 13 413 438 HOH HOH . 
U 10 HOH A 14 414 449 HOH HOH . 
U 10 HOH A 15 415 504 HOH HOH . 
U 10 HOH A 16 416 539 HOH HOH . 
U 10 HOH A 17 417 448 HOH HOH . 
U 10 HOH A 18 418 433 HOH HOH . 
U 10 HOH A 19 419 432 HOH HOH . 
U 10 HOH A 20 420 529 HOH HOH . 
U 10 HOH A 21 421 409 HOH HOH . 
U 10 HOH A 22 422 439 HOH HOH . 
U 10 HOH A 23 423 506 HOH HOH . 
U 10 HOH A 24 424 425 HOH HOH . 
U 10 HOH A 25 425 522 HOH HOH . 
U 10 HOH A 26 426 541 HOH HOH . 
U 10 HOH A 27 427 437 HOH HOH . 
U 10 HOH A 28 428 411 HOH HOH . 
U 10 HOH A 29 429 428 HOH HOH . 
U 10 HOH A 30 430 517 HOH HOH . 
U 10 HOH A 31 431 440 HOH HOH . 
U 10 HOH A 32 432 445 HOH HOH . 
U 10 HOH A 33 433 406 HOH HOH . 
U 10 HOH A 34 434 520 HOH HOH . 
U 10 HOH A 35 435 538 HOH HOH . 
U 10 HOH A 36 436 412 HOH HOH . 
U 10 HOH A 37 437 407 HOH HOH . 
U 10 HOH A 38 438 511 HOH HOH . 
U 10 HOH A 39 439 423 HOH HOH . 
U 10 HOH A 40 440 422 HOH HOH . 
U 10 HOH A 41 441 419 HOH HOH . 
U 10 HOH A 42 442 542 HOH HOH . 
U 10 HOH A 43 443 435 HOH HOH . 
U 10 HOH A 44 444 518 HOH HOH . 
U 10 HOH A 45 445 421 HOH HOH . 
U 10 HOH A 46 446 514 HOH HOH . 
U 10 HOH A 47 447 530 HOH HOH . 
U 10 HOH A 48 448 519 HOH HOH . 
U 10 HOH A 49 449 414 HOH HOH . 
U 10 HOH A 50 450 536 HOH HOH . 
U 10 HOH A 51 451 525 HOH HOH . 
U 10 HOH A 52 452 526 HOH HOH . 
U 10 HOH A 53 453 453 HOH HOH . 
U 10 HOH A 54 454 443 HOH HOH . 
U 10 HOH A 55 455 426 HOH HOH . 
U 10 HOH A 56 456 528 HOH HOH . 
U 10 HOH A 57 457 516 HOH HOH . 
U 10 HOH A 58 458 413 HOH HOH . 
U 10 HOH A 59 459 532 HOH HOH . 
U 10 HOH A 60 460 543 HOH HOH . 
U 10 HOH A 61 461 534 HOH HOH . 
U 10 HOH A 62 462 408 HOH HOH . 
U 10 HOH A 63 463 537 HOH HOH . 
U 10 HOH A 64 464 452 HOH HOH . 
U 10 HOH A 65 465 446 HOH HOH . 
U 10 HOH A 66 466 430 HOH HOH . 
U 10 HOH A 67 467 410 HOH HOH . 
U 10 HOH A 68 468 420 HOH HOH . 
U 10 HOH A 69 469 444 HOH HOH . 
U 10 HOH A 70 470 531 HOH HOH . 
U 10 HOH A 71 471 434 HOH HOH . 
U 10 HOH A 72 472 512 HOH HOH . 
U 10 HOH A 73 473 401 HOH HOH . 
U 10 HOH A 74 474 415 HOH HOH . 
U 10 HOH A 75 475 513 HOH HOH . 
U 10 HOH A 76 476 417 HOH HOH . 
U 10 HOH A 77 477 540 HOH HOH . 
U 10 HOH A 78 478 521 HOH HOH . 
U 10 HOH A 79 479 429 HOH HOH . 
U 10 HOH A 80 480 424 HOH HOH . 
U 10 HOH A 81 481 524 HOH HOH . 
U 10 HOH A 82 482 436 HOH HOH . 
U 10 HOH A 83 483 450 HOH HOH . 
U 10 HOH A 84 484 515 HOH HOH . 
U 10 HOH A 85 485 431 HOH HOH . 
U 10 HOH A 86 486 544 HOH HOH . 
U 10 HOH A 87 487 441 HOH HOH . 
U 10 HOH A 88 488 533 HOH HOH . 
U 10 HOH A 89 489 545 HOH HOH . 
U 10 HOH A 90 490 427 HOH HOH . 
U 10 HOH A 91 491 523 HOH HOH . 
U 10 HOH A 92 492 451 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DD9 . . . Q 8 7.529 -43.583 -1.792 1 58.79 ? C1 DD9 316 A 1 
HETATM 2 C C2 DD9 . . . Q 8 6.907 -42.553 -0.853 1 57.9 ? C2 DD9 316 A 1 
HETATM 3 C C3 DD9 . . . Q 8 7.787 -42.417 0.39 1 57.89 ? C3 DD9 316 A 1 
HETATM 4 C C4 DD9 . . . Q 8 7.355 -41.184 1.181 1 57.04 ? C4 DD9 316 A 1 
HETATM 5 C C5 DD9 . . . Q 8 8.577 -40.393 1.648 1 56.4 ? C5 DD9 316 A 1 
HETATM 6 C C6 DD9 . . . Q 8 8.099 -39.027 2.135 1 55.95 ? C6 DD9 316 A 1 
HETATM 7 C C7 DD9 . . . Q 8 9.273 -38.062 2.274 1 54.75 ? C7 DD9 316 A 1 
HETATM 8 C C8 DD9 . . . Q 8 8.785 -36.795 2.97 1 56.4 ? C8 DD9 316 A 1 
HETATM 9 C C9 DD9 . . . Q 8 9.977 -35.913 3.333 1 57.89 ? C9 DD9 316 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           9 
#