data_6JOI # _model_server_result.job_id yJjP253bLPZU3Ej16faq5A _model_server_result.datetime_utc '2024-11-23 01:34:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6joi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6JOI # _exptl.entry_id 6JOI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.541 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JOI _cell.length_a 52.757 _cell.length_b 73.992 _cell.length_c 103.706 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H29 N5 O2' _chem_comp.formula_weight 443.541 _chem_comp.id 6T2 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Crenolanib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C26 6T2 sing 1 n n O2 C24 6T2 sing 2 n n C26 C23 6T2 sing 3 n n C24 C23 6T2 sing 4 n n C23 C5 6T2 sing 5 n n C23 C27 6T2 sing 6 n n C5 O1 6T2 sing 7 n n N80 C50 6T2 sing 8 n n O1 C13 6T2 sing 9 n n C40 C50 6T2 sing 10 n n C40 C30 6T2 sing 11 n n C13 C18 6T2 doub 12 n y C13 C12 6T2 sing 13 n y C18 C19 6T2 sing 14 n y C50 C60 6T2 sing 15 n n C12 C10 6T2 doub 16 n y C19 C9 6T2 doub 17 n y C30 N4 6T2 sing 18 n n C10 C9 6T2 sing 19 n y C10 N2 6T2 sing 20 n y C60 C70 6T2 sing 21 n n C9 N1 6T2 sing 22 n y N4 C70 6T2 sing 23 n n N4 C11 6T2 sing 24 n n N2 C1 6T2 doub 25 n y N1 C1 6T2 sing 26 n y N1 C2 6T2 sing 27 n n N3 C2 6T2 doub 28 n y N3 C7 6T2 sing 29 n y C11 C7 6T2 doub 30 n y C11 C14 6T2 sing 31 n y C2 C3 6T2 sing 32 n y C7 C6 6T2 sing 33 n y C14 C15 6T2 doub 34 n y C3 C4 6T2 doub 35 n y C6 C4 6T2 sing 36 n y C6 C16 6T2 doub 37 n y C15 C16 6T2 sing 38 n y C1 H1 6T2 sing 39 n n C3 H2 6T2 sing 40 n n C4 H3 6T2 sing 41 n n C5 H4 6T2 sing 42 n n C5 H5 6T2 sing 43 n n C12 H6 6T2 sing 44 n n C14 H7 6T2 sing 45 n n C15 H8 6T2 sing 46 n n C30 H9 6T2 sing 47 n n C30 H10 6T2 sing 48 n n C40 H11 6T2 sing 49 n n C40 H12 6T2 sing 50 n n C50 H13 6T2 sing 51 n n N80 H14 6T2 sing 52 n n N80 H15 6T2 sing 53 n n C60 H17 6T2 sing 54 n n C60 H18 6T2 sing 55 n n C70 H19 6T2 sing 56 n n C70 H20 6T2 sing 57 n n C16 H21 6T2 sing 58 n n C19 H22 6T2 sing 59 n n C18 H23 6T2 sing 60 n n C27 H24 6T2 sing 61 n n C27 H25 6T2 sing 62 n n C27 H26 6T2 sing 63 n n C24 H27 6T2 sing 64 n n C24 H28 6T2 sing 65 n n C26 H29 6T2 sing 66 n n C26 H30 6T2 sing 67 n n # _atom_sites.entry_id 6JOI _atom_sites.fract_transf_matrix[1][1] 0.018955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6T2 A 1 1001 1 6T2 DRG . C 3 HOH A 1 1101 2 HOH HOH . C 3 HOH A 2 1102 3 HOH HOH . C 3 HOH A 3 1103 16 HOH HOH . C 3 HOH A 4 1104 12 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 14 HOH HOH . C 3 HOH A 8 1108 13 HOH HOH . C 3 HOH A 9 1109 4 HOH HOH . C 3 HOH A 10 1110 1 HOH HOH . C 3 HOH A 11 1111 9 HOH HOH . C 3 HOH A 12 1112 8 HOH HOH . C 3 HOH A 13 1113 7 HOH HOH . C 3 HOH A 14 1114 10 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6T2 . . . B 2 6.217 2.054 -11.558 1 55.23 ? C1 6T2 1001 A 1 HETATM 2 C C2 6T2 . . . B 2 7.858 0.613 -10.762 1 55.69 ? C2 6T2 1001 A 1 HETATM 3 C C3 6T2 . . . B 2 7.167 -0.487 -11.195 1 57.85 ? C3 6T2 1001 A 1 HETATM 4 C C4 6T2 . . . B 2 7.63 -1.737 -10.87 1 59.32 ? C4 6T2 1001 A 1 HETATM 5 C C5 6T2 . . . B 2 9.143 7.5 -11.932 1 64.24 ? C5 6T2 1001 A 1 HETATM 6 C C6 6T2 . . . B 2 8.772 -1.841 -10.117 1 58.89 ? C6 6T2 1001 A 1 HETATM 7 C C7 6T2 . . . B 2 9.435 -0.711 -9.694 1 65.1 ? C7 6T2 1001 A 1 HETATM 8 C C9 6T2 . . . B 2 8.045 2.936 -10.913 1 62.01 ? C9 6T2 1001 A 1 HETATM 9 C C10 6T2 . . . B 2 7.251 3.908 -11.32 1 60.02 ? C10 6T2 1001 A 1 HETATM 10 C C11 6T2 . . . B 2 10.592 -0.845 -8.934 1 66.57 ? C11 6T2 1001 A 1 HETATM 11 C C12 6T2 . . . B 2 7.633 5.173 -11.28 1 57.37 ? C12 6T2 1001 A 1 HETATM 12 C C13 6T2 . . . B 2 8.89 5.495 -10.815 1 56.78 ? C13 6T2 1001 A 1 HETATM 13 C C14 6T2 . . . B 2 11.036 -2.116 -8.613 1 63.08 ? C14 6T2 1001 A 1 HETATM 14 C C15 6T2 . . . B 2 10.369 -3.241 -9.043 1 65.43 ? C15 6T2 1001 A 1 HETATM 15 C C30 6T2 . . . B 2 10.563 1.415 -8.047 1 64.99 ? C30 6T2 1001 A 1 HETATM 16 C C40 6T2 . . . B 2 11.339 2.659 -8.28 1 66.29 ? C40 6T2 1001 A 1 HETATM 17 C C50 6T2 . . . B 2 12.685 2.486 -7.682 1 67.01 ? C50 6T2 1001 A 1 HETATM 18 N N80 6T2 . . . B 2 12.579 2.041 -6.295 1 62.01 ? N80 6T2 1001 A 1 HETATM 19 C C60 6T2 . . . B 2 13.402 1.469 -8.496 1 68.3 ? C60 6T2 1001 A 1 HETATM 20 C C70 6T2 . . . B 2 12.742 0.142 -8.328 1 60.46 ? C70 6T2 1001 A 1 HETATM 21 N N4 6T2 . . . B 2 11.28 0.21 -8.474 1 65.28 ? N4 6T2 1001 A 1 HETATM 22 N N3 6T2 . . . B 2 8.957 0.487 -10.037 1 60.37 ? N3 6T2 1001 A 1 HETATM 23 C C16 6T2 . . . B 2 9.23 -3.096 -9.798 1 60.08 ? C16 6T2 1001 A 1 HETATM 24 N N1 6T2 . . . B 2 7.406 1.803 -11.065 1 57.57 ? N1 6T2 1001 A 1 HETATM 25 N N2 6T2 . . . B 2 6.123 3.359 -11.713 1 54.66 ? N2 6T2 1001 A 1 HETATM 26 C C19 6T2 . . . B 2 9.256 3.182 -10.456 1 62 ? C19 6T2 1001 A 1 HETATM 27 C C18 6T2 . . . B 2 9.714 4.481 -10.394 1 64.09 ? C18 6T2 1001 A 1 HETATM 28 O O1 6T2 . . . B 2 9.337 6.766 -10.743 1 57.3 ? O1 6T2 1001 A 1 HETATM 29 C C23 6T2 . . . B 2 9.816 8.857 -11.783 1 67.35 ? C23 6T2 1001 A 1 HETATM 30 C C27 6T2 . . . B 2 10.013 9.576 -13.13 1 64.73 ? C27 6T2 1001 A 1 HETATM 31 C C24 6T2 . . . B 2 9.135 9.722 -10.77 1 71.17 ? C24 6T2 1001 A 1 HETATM 32 O O2 6T2 . . . B 2 10.46 10.261 -10.565 1 79.44 ? O2 6T2 1001 A 1 HETATM 33 C C26 6T2 . . . B 2 10.957 8.927 -10.841 1 69.68 ? C26 6T2 1001 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #