data_6JOJ
#
_model_server_result.job_id            tq5cX3lnkgqYT43tjwKCkg 
_model_server_result.datetime_utc      '2024-11-23 00:45:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6joj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    6JOJ 
#
_exptl.entry_id    6JOJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.541 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6JOJ 
_cell.length_a            100.556 
_cell.length_b            100.556 
_cell.length_c            110.987 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JOJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H29 N5 O2' 
_chem_comp.formula_weight    443.541 
_chem_comp.id                6T2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Crenolanib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C26 6T2 sing 1 n n 
O2 C24 6T2 sing 2 n n 
C26 C23 6T2 sing 3 n n 
C24 C23 6T2 sing 4 n n 
C23 C5 6T2 sing 5 n n 
C23 C27 6T2 sing 6 n n 
C5 O1 6T2 sing 7 n n 
N80 C50 6T2 sing 8 n n 
O1 C13 6T2 sing 9 n n 
C40 C50 6T2 sing 10 n n 
C40 C30 6T2 sing 11 n n 
C13 C18 6T2 doub 12 n y 
C13 C12 6T2 sing 13 n y 
C18 C19 6T2 sing 14 n y 
C50 C60 6T2 sing 15 n n 
C12 C10 6T2 doub 16 n y 
C19 C9 6T2 doub 17 n y 
C30 N4 6T2 sing 18 n n 
C10 C9 6T2 sing 19 n y 
C10 N2 6T2 sing 20 n y 
C60 C70 6T2 sing 21 n n 
C9 N1 6T2 sing 22 n y 
N4 C70 6T2 sing 23 n n 
N4 C11 6T2 sing 24 n n 
N2 C1 6T2 doub 25 n y 
N1 C1 6T2 sing 26 n y 
N1 C2 6T2 sing 27 n n 
N3 C2 6T2 doub 28 n y 
N3 C7 6T2 sing 29 n y 
C11 C7 6T2 doub 30 n y 
C11 C14 6T2 sing 31 n y 
C2 C3 6T2 sing 32 n y 
C7 C6 6T2 sing 33 n y 
C14 C15 6T2 doub 34 n y 
C3 C4 6T2 doub 35 n y 
C6 C4 6T2 sing 36 n y 
C6 C16 6T2 doub 37 n y 
C15 C16 6T2 sing 38 n y 
C1 H1 6T2 sing 39 n n 
C3 H2 6T2 sing 40 n n 
C4 H3 6T2 sing 41 n n 
C5 H4 6T2 sing 42 n n 
C5 H5 6T2 sing 43 n n 
C12 H6 6T2 sing 44 n n 
C14 H7 6T2 sing 45 n n 
C15 H8 6T2 sing 46 n n 
C30 H9 6T2 sing 47 n n 
C30 H10 6T2 sing 48 n n 
C40 H11 6T2 sing 49 n n 
C40 H12 6T2 sing 50 n n 
C50 H13 6T2 sing 51 n n 
N80 H14 6T2 sing 52 n n 
N80 H15 6T2 sing 53 n n 
C60 H17 6T2 sing 54 n n 
C60 H18 6T2 sing 55 n n 
C70 H19 6T2 sing 56 n n 
C70 H20 6T2 sing 57 n n 
C16 H21 6T2 sing 58 n n 
C19 H22 6T2 sing 59 n n 
C18 H23 6T2 sing 60 n n 
C27 H24 6T2 sing 61 n n 
C27 H25 6T2 sing 62 n n 
C27 H26 6T2 sing 63 n n 
C24 H27 6T2 sing 64 n n 
C24 H28 6T2 sing 65 n n 
C26 H29 6T2 sing 66 n n 
C26 H30 6T2 sing 67 n n 
#
_atom_sites.entry_id                     6JOJ 
_atom_sites.fract_transf_matrix[1][1]    0.009945 
_atom_sites.fract_transf_matrix[1][2]    0.005742 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00901 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6T2 A 1 1001 1 6T2 DRG . 
C 3 SO4 A 1 1002 1 SO4 SO4 . 
D 3 SO4 A 1 1003 1 SO4 SO4 . 
E 4 CL A 1 1004 1 CL CL . 
F 4 CL A 1 1005 2 CL CL . 
G 4 CL A 1 1006 4 CL CL . 
H 4 CL A 1 1007 5 CL CL . 
I 4 CL A 1 1008 6 CL CL . 
J 4 CL A 1 1009 7 CL CL . 
K 4 CL A 1 1010 8 CL CL . 
L 5 HOH A 1 1101 20 HOH HOH . 
L 5 HOH A 2 1102 15 HOH HOH . 
L 5 HOH A 3 1103 31 HOH HOH . 
L 5 HOH A 4 1104 40 HOH HOH . 
L 5 HOH A 5 1105 29 HOH HOH . 
L 5 HOH A 6 1106 30 HOH HOH . 
L 5 HOH A 7 1107 16 HOH HOH . 
L 5 HOH A 8 1108 19 HOH HOH . 
L 5 HOH A 9 1109 38 HOH HOH . 
L 5 HOH A 10 1110 37 HOH HOH . 
L 5 HOH A 11 1111 8 HOH HOH . 
L 5 HOH A 12 1112 43 HOH HOH . 
L 5 HOH A 13 1113 26 HOH HOH . 
L 5 HOH A 14 1114 17 HOH HOH . 
L 5 HOH A 15 1115 24 HOH HOH . 
L 5 HOH A 16 1116 28 HOH HOH . 
L 5 HOH A 17 1117 12 HOH HOH . 
L 5 HOH A 18 1118 35 HOH HOH . 
L 5 HOH A 19 1119 13 HOH HOH . 
L 5 HOH A 20 1120 25 HOH HOH . 
L 5 HOH A 21 1121 22 HOH HOH . 
L 5 HOH A 22 1122 6 HOH HOH . 
L 5 HOH A 23 1123 21 HOH HOH . 
L 5 HOH A 24 1124 2 HOH HOH . 
L 5 HOH A 25 1125 27 HOH HOH . 
L 5 HOH A 26 1126 41 HOH HOH . 
L 5 HOH A 27 1127 39 HOH HOH . 
L 5 HOH A 28 1128 11 HOH HOH . 
L 5 HOH A 29 1129 34 HOH HOH . 
L 5 HOH A 30 1130 18 HOH HOH . 
L 5 HOH A 31 1131 33 HOH HOH . 
L 5 HOH A 32 1132 44 HOH HOH . 
L 5 HOH A 33 1133 36 HOH HOH . 
L 5 HOH A 34 1134 42 HOH HOH . 
L 5 HOH A 35 1135 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 6T2 . . . B 2 106.273 -81.858 16.685 1 35.7 ? C1 6T2 1001 A 1 
HETATM 2 C C2 6T2 . . . B 2 106.665 -79.617 16.383 1 33.45 ? C2 6T2 1001 A 1 
HETATM 3 C C3 6T2 . . . B 2 107.019 -79.531 17.715 1 30.86 ? C3 6T2 1001 A 1 
HETATM 4 C C4 6T2 . . . B 2 107.332 -78.312 18.278 1 30.54 ? C4 6T2 1001 A 1 
HETATM 5 C C5 6T2 . . . B 2 105.133 -84.53 11.163 1 39.9 ? C5 6T2 1001 A 1 
HETATM 6 C C6 6T2 . . . B 2 107.262 -77.2 17.475 1 32.75 ? C6 6T2 1001 A 1 
HETATM 7 C C7 6T2 . . . B 2 106.892 -77.314 16.149 1 37.51 ? C7 6T2 1001 A 1 
HETATM 8 C C9 6T2 . . . B 2 106.019 -81.168 14.67 1 36.46 ? C9 6T2 1001 A 1 
HETATM 9 C C10 6T2 . . . B 2 105.759 -82.463 14.704 1 35.56 ? C10 6T2 1001 A 1 
HETATM 10 C C11 6T2 . . . B 2 106.836 -76.174 15.367 1 36.24 ? C11 6T2 1001 A 1 
HETATM 11 C C12 6T2 . . . B 2 105.404 -83.123 13.615 1 35.85 ? C12 6T2 1001 A 1 
HETATM 12 C C13 6T2 . . . B 2 105.3 -82.485 12.392 1 37.25 ? C13 6T2 1001 A 1 
HETATM 13 C C14 6T2 . . . B 2 107.145 -74.941 15.91 1 36.51 ? C14 6T2 1001 A 1 
HETATM 14 C C15 6T2 . . . B 2 107.509 -74.834 17.235 1 37.16 ? C15 6T2 1001 A 1 
HETATM 15 C C30 6T2 . . . B 2 107.32 -75.506 13.112 1 33.65 ? C30 6T2 1001 A 1 
HETATM 16 C C40 6T2 . . . B 2 107.256 -76.103 11.742 1 36.74 ? C40 6T2 1001 A 1 
HETATM 17 C C50 6T2 . . . B 2 105.826 -76.369 11.376 1 41.12 ? C50 6T2 1001 A 1 
HETATM 18 N N80 6T2 . . . B 2 105.734 -76.803 9.984 1 37.49 ? N80 6T2 1001 A 1 
HETATM 19 C C60 6T2 . . . B 2 105.3 -77.432 12.287 1 35.33 ? C60 6T2 1001 A 1 
HETATM 20 C C70 6T2 . . . B 2 105.254 -76.915 13.696 1 33.05 ? C70 6T2 1001 A 1 
HETATM 21 N N4 6T2 . . . B 2 106.484 -76.218 14.087 1 32.64 ? N4 6T2 1001 A 1 
HETATM 22 N N3 6T2 . . . B 2 106.6 -78.513 15.632 1 37.59 ? N3 6T2 1001 A 1 
HETATM 23 C C16 6T2 . . . B 2 107.566 -75.97 18.012 1 34.22 ? C16 6T2 1001 A 1 
HETATM 24 N N1 6T2 . . . B 2 106.35 -80.805 15.899 1 33.38 ? N1 6T2 1001 A 1 
HETATM 25 N N2 6T2 . . . B 2 105.914 -82.885 15.944 1 39.21 ? N2 6T2 1001 A 1 
HETATM 26 C C19 6T2 . . . B 2 105.933 -80.498 13.528 1 36.99 ? C19 6T2 1001 A 1 
HETATM 27 C C18 6T2 . . . B 2 105.567 -81.136 12.355 1 33.99 ? C18 6T2 1001 A 1 
HETATM 28 O O1 6T2 . . . B 2 104.925 -83.119 11.248 1 35.63 ? O1 6T2 1001 A 1 
HETATM 29 C C23 6T2 . . . B 2 104.438 -85.084 9.908 1 46.81 ? C23 6T2 1001 A 1 
HETATM 30 C C27 6T2 . . . B 2 105.066 -86.385 9.404 1 36.46 ? C27 6T2 1001 A 1 
HETATM 31 C C24 6T2 . . . B 2 102.956 -85.186 10.092 1 45.81 ? C24 6T2 1001 A 1 
HETATM 32 O O2 6T2 . . . B 2 102.974 -83.778 9.743 1 43.84 ? O2 6T2 1001 A 1 
HETATM 33 C C26 6T2 . . . B 2 104.085 -84.09 8.869 1 45.5 ? C26 6T2 1001 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#