data_6JOK # _model_server_result.job_id JI8tSJOgt3Psw189dZ3rog _model_server_result.datetime_utc '2024-11-22 20:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6JOK # _exptl.entry_id 6JOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JOK _cell.length_a 102.611 _cell.length_b 102.611 _cell.length_c 111.301 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H27 F N4 O2' _chem_comp.formula_weight 398.474 _chem_comp.id B49 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SUNITINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C14 B49 sing 70 n n C4 H4 B49 sing 71 n n C4 H4A B49 sing 72 n n C4 H4B B49 sing 73 n n C5 C6 B49 doub 74 n y C5 C15 B49 sing 75 n y C5 H5 B49 sing 76 n n C6 C16 B49 sing 77 n y C6 H6 B49 sing 78 n n C7 C15 B49 doub 79 n y C7 C17 B49 sing 80 n y C7 H7 B49 sing 81 n n C13 C3 B49 sing 82 n n C13 C18 B49 doub 83 n y C13 C19 B49 sing 84 n y C15 F29 B49 sing 85 n n C17 C20 B49 sing 86 n n C17 C16 B49 doub 87 n y C20 C21 B49 sing 88 n n C20 C12 B49 doub 89 z n C21 N24 B49 sing 90 n n C21 O27 B49 doub 91 n n C22 C19 B49 sing 92 n n C22 N25 B49 sing 93 n n C22 O28 B49 doub 94 n n C3 H3 B49 sing 95 n n C3 H3A B49 sing 96 n n C3 H3B B49 sing 97 n n C12 C18 B49 sing 98 n n C12 H12 B49 sing 99 n n C14 C19 B49 doub 100 n y C14 N23 B49 sing 101 n y C16 N24 B49 sing 102 n n C18 N23 B49 sing 103 n y N23 HN23 B49 sing 104 n n N24 HN24 B49 sing 105 n n N25 HN25 B49 sing 106 n n N25 C37 B49 sing 107 n n C37 C38 B49 sing 108 n n C38 N4 B49 sing 109 n n N4 C39 B49 sing 110 n n N4 C40 B49 sing 111 n n C40 C41 B49 sing 112 n n C39 C42 B49 sing 113 n n C37 H14 B49 sing 114 n n C37 H15 B49 sing 115 n n C38 H16 B49 sing 116 n n C38 H17 B49 sing 117 n n C39 H18 B49 sing 118 n n C39 H19 B49 sing 119 n n C40 H20 B49 sing 120 n n C40 H21 B49 sing 121 n n C41 H22 B49 sing 122 n n C41 H23 B49 sing 123 n n C41 H24 B49 sing 124 n n C42 H25 B49 sing 125 n n C42 H26 B49 sing 126 n n C42 H27 B49 sing 127 n n # _atom_sites.entry_id 6JOK _atom_sites.fract_transf_matrix[1][1] 0.009746 _atom_sites.fract_transf_matrix[1][2] 0.005627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B49 A 1 1001 1 B49 DRG . C 3 CL A 1 1002 1 CL CL . D 3 CL A 1 1003 2 CL CL . E 4 HOH A 1 1101 4 HOH HOH . E 4 HOH A 2 1102 3 HOH HOH . E 4 HOH A 3 1103 2 HOH HOH . E 4 HOH A 4 1104 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B49 . . . B 2 20.734 132.926 -6.69 1 87.55 ? C4 B49 1001 A 1 HETATM 2 C C5 B49 . . . B 2 15.08 133.661 0.394 1 87.55 ? C5 B49 1001 A 1 HETATM 3 C C6 B49 . . . B 2 16.452 133.725 0.215 1 87.55 ? C6 B49 1001 A 1 HETATM 4 C C7 B49 . . . B 2 14.887 133.332 -1.951 1 87.55 ? C7 B49 1001 A 1 HETATM 5 C C13 B49 . . . B 2 17.143 132.578 -6.559 1 87.55 ? C13 B49 1001 A 1 HETATM 6 C C15 B49 . . . B 2 14.286 133.46 -0.715 1 87.55 ? C15 B49 1001 A 1 HETATM 7 C C17 B49 . . . B 2 16.207 133.401 -2.059 1 87.55 ? C17 B49 1001 A 1 HETATM 8 C C20 B49 . . . B 2 16.996 133.309 -3.115 1 87.55 ? C20 B49 1001 A 1 HETATM 9 C C21 B49 . . . B 2 18.248 133.442 -2.705 1 87.55 ? C21 B49 1001 A 1 HETATM 10 C C22 B49 . . . B 2 18.434 132.204 -8.496 1 87.55 ? C22 B49 1001 A 1 HETATM 11 C C3 B49 . . . B 2 15.765 132.28 -7.14 1 87.55 ? C3 B49 1001 A 1 HETATM 12 C C12 B49 . . . B 2 16.528 133.111 -4.346 1 87.55 ? C12 B49 1001 A 1 HETATM 13 C C14 B49 . . . B 2 19.246 132.858 -6.367 1 87.55 ? C14 B49 1001 A 1 HETATM 14 C C16 B49 . . . B 2 16.984 133.595 -0.994 1 87.55 ? C16 B49 1001 A 1 HETATM 15 C C18 B49 . . . B 2 17.413 132.945 -5.314 1 87.55 ? C18 B49 1001 A 1 HETATM 16 C C19 B49 . . . B 2 18.285 132.523 -7.216 1 87.55 ? C19 B49 1001 A 1 HETATM 17 N N23 B49 . . . B 2 18.719 133.12 -5.175 1 87.55 ? N23 B49 1001 A 1 HETATM 18 N N24 B49 . . . B 2 18.253 133.62 -1.395 1 87.55 ? N24 B49 1001 A 1 HETATM 19 N N25 B49 . . . B 2 19.458 132.814 -9.101 1 87.55 ? N25 B49 1001 A 1 HETATM 20 O O27 B49 . . . B 2 19.257 133.409 -3.402 1 87.55 ? O27 B49 1001 A 1 HETATM 21 O O28 B49 . . . B 2 17.667 131.42 -9.046 1 87.55 ? O28 B49 1001 A 1 HETATM 22 F F29 B49 . . . B 2 13.024 133.395 -0.603 1 87.55 ? F29 B49 1001 A 1 HETATM 23 C C37 B49 . . . B 2 19.815 132.616 -10.512 1 87.55 ? C37 B49 1001 A 1 HETATM 24 C C38 B49 . . . B 2 18.569 132.449 -11.373 1 87.55 ? C38 B49 1001 A 1 HETATM 25 N N4 B49 . . . B 2 18.367 131.034 -11.706 1 87.55 ? N4 B49 1001 A 1 HETATM 26 C C39 B49 . . . B 2 19.513 130.546 -12.488 1 87.55 ? C39 B49 1001 A 1 HETATM 27 C C40 B49 . . . B 2 17.147 130.898 -12.515 1 87.55 ? C40 B49 1001 A 1 HETATM 28 C C41 B49 . . . B 2 16.915 129.439 -12.918 1 87.55 ? C41 B49 1001 A 1 HETATM 29 C C42 B49 . . . B 2 20.671 130.116 -11.586 1 87.55 ? C42 B49 1001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #