data_6JOL # _model_server_result.job_id mcRmm5-pAj2hrFChkYB0TQ _model_server_result.datetime_utc '2025-08-31 03:03:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6JOL # _exptl.entry_id 6JOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JOL _cell.length_a 135.335 _cell.length_b 135.335 _cell.length_c 34.959 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 290 n y C1 C2 STI sing 291 n y C1 H11 STI sing 292 n n C6 C5 STI sing 293 n y C6 H61 STI sing 294 n n C5 C4 STI doub 295 n y C5 C7 STI sing 296 n y C4 N3 STI sing 297 n y C4 H41 STI sing 298 n n N3 C2 STI doub 299 n y C2 H21 STI sing 300 n n C7 C12 STI doub 301 n y C7 N8 STI sing 302 n y C12 C11 STI sing 303 n y C12 H121 STI sing 304 n n C11 N10 STI doub 305 n y C11 H111 STI sing 306 n n N10 C9 STI sing 307 n y C9 N8 STI doub 308 n y C9 N13 STI sing 309 n n N13 C14 STI sing 310 n n N13 H131 STI sing 311 n n C14 C19 STI doub 312 n y C14 C15 STI sing 313 n y C19 C18 STI sing 314 n y C19 C20 STI sing 315 n n C18 C17 STI doub 316 n y C18 H181 STI sing 317 n n C17 C16 STI sing 318 n y C17 H171 STI sing 319 n n C16 C15 STI doub 320 n y C16 N21 STI sing 321 n n C15 H151 STI sing 322 n n N21 C22 STI sing 323 n n N21 H211 STI sing 324 n n C22 C23 STI sing 325 n n C22 O29 STI doub 326 n n C23 C25 STI doub 327 n y C23 C29 STI sing 328 n y C25 C26 STI sing 329 n y C25 H251 STI sing 330 n n C26 C27 STI doub 331 n y C26 H261 STI sing 332 n n C27 C28 STI sing 333 n y C27 C46 STI sing 334 n n C28 C29 STI doub 335 n y C28 H281 STI sing 336 n n C29 H291 STI sing 337 n n C46 N48 STI sing 338 n n C46 H461 STI sing 339 n n C46 H462 STI sing 340 n n N48 C53 STI sing 341 n n N48 C49 STI sing 342 n n C53 C52 STI sing 343 n n C53 H531 STI sing 344 n n C53 H532 STI sing 345 n n C52 N51 STI sing 346 n n C52 H521 STI sing 347 n n C52 H522 STI sing 348 n n N51 C54 STI sing 349 n n N51 C50 STI sing 350 n n C54 H541 STI sing 351 n n C54 H542 STI sing 352 n n C54 H543 STI sing 353 n n C50 C49 STI sing 354 n n C50 H501 STI sing 355 n n C50 H502 STI sing 356 n n C49 H491 STI sing 357 n n C49 H492 STI sing 358 n n C20 H201 STI sing 359 n n C20 H202 STI sing 360 n n C20 H203 STI sing 361 n n # _atom_sites.entry_id 6JOL _atom_sites.fract_transf_matrix[1][1] 0.007389 _atom_sites.fract_transf_matrix[1][2] 0.004266 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STI A 1 1001 2 STI DRG . C 3 HOH A 1 1101 48 HOH HOH . C 3 HOH A 2 1102 77 HOH HOH . C 3 HOH A 3 1103 34 HOH HOH . C 3 HOH A 4 1104 17 HOH HOH . C 3 HOH A 5 1105 52 HOH HOH . C 3 HOH A 6 1106 49 HOH HOH . C 3 HOH A 7 1107 54 HOH HOH . C 3 HOH A 8 1108 29 HOH HOH . C 3 HOH A 9 1109 10 HOH HOH . C 3 HOH A 10 1110 18 HOH HOH . C 3 HOH A 11 1111 27 HOH HOH . C 3 HOH A 12 1112 75 HOH HOH . C 3 HOH A 13 1113 9 HOH HOH . C 3 HOH A 14 1114 50 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 1 HOH HOH . C 3 HOH A 17 1117 79 HOH HOH . C 3 HOH A 18 1118 68 HOH HOH . C 3 HOH A 19 1119 69 HOH HOH . C 3 HOH A 20 1120 6 HOH HOH . C 3 HOH A 21 1121 36 HOH HOH . C 3 HOH A 22 1122 20 HOH HOH . C 3 HOH A 23 1123 70 HOH HOH . C 3 HOH A 24 1124 61 HOH HOH . C 3 HOH A 25 1125 60 HOH HOH . C 3 HOH A 26 1126 37 HOH HOH . C 3 HOH A 27 1127 66 HOH HOH . C 3 HOH A 28 1128 11 HOH HOH . C 3 HOH A 29 1129 57 HOH HOH . C 3 HOH A 30 1130 76 HOH HOH . C 3 HOH A 31 1131 82 HOH HOH . C 3 HOH A 32 1132 25 HOH HOH . C 3 HOH A 33 1133 41 HOH HOH . C 3 HOH A 34 1134 45 HOH HOH . C 3 HOH A 35 1135 63 HOH HOH . C 3 HOH A 36 1136 38 HOH HOH . C 3 HOH A 37 1137 30 HOH HOH . C 3 HOH A 38 1138 32 HOH HOH . C 3 HOH A 39 1139 21 HOH HOH . C 3 HOH A 40 1140 40 HOH HOH . C 3 HOH A 41 1141 8 HOH HOH . C 3 HOH A 42 1142 78 HOH HOH . C 3 HOH A 43 1143 2 HOH HOH . C 3 HOH A 44 1144 4 HOH HOH . C 3 HOH A 45 1145 39 HOH HOH . C 3 HOH A 46 1146 13 HOH HOH . C 3 HOH A 47 1147 12 HOH HOH . C 3 HOH A 48 1148 59 HOH HOH . C 3 HOH A 49 1149 84 HOH HOH . C 3 HOH A 50 1150 26 HOH HOH . C 3 HOH A 51 1151 19 HOH HOH . C 3 HOH A 52 1152 28 HOH HOH . C 3 HOH A 53 1153 80 HOH HOH . C 3 HOH A 54 1154 81 HOH HOH . C 3 HOH A 55 1155 23 HOH HOH . C 3 HOH A 56 1156 31 HOH HOH . C 3 HOH A 57 1157 51 HOH HOH . C 3 HOH A 58 1158 46 HOH HOH . C 3 HOH A 59 1159 55 HOH HOH . C 3 HOH A 60 1160 33 HOH HOH . C 3 HOH A 61 1161 72 HOH HOH . C 3 HOH A 62 1162 24 HOH HOH . C 3 HOH A 63 1163 56 HOH HOH . C 3 HOH A 64 1164 22 HOH HOH . C 3 HOH A 65 1165 53 HOH HOH . C 3 HOH A 66 1166 14 HOH HOH . C 3 HOH A 67 1167 43 HOH HOH . C 3 HOH A 68 1168 5 HOH HOH . C 3 HOH A 69 1169 7 HOH HOH . C 3 HOH A 70 1170 71 HOH HOH . C 3 HOH A 71 1171 58 HOH HOH . C 3 HOH A 72 1172 42 HOH HOH . C 3 HOH A 73 1173 65 HOH HOH . C 3 HOH A 74 1174 3 HOH HOH . C 3 HOH A 75 1175 73 HOH HOH . C 3 HOH A 76 1176 47 HOH HOH . C 3 HOH A 77 1177 85 HOH HOH . C 3 HOH A 78 1178 35 HOH HOH . C 3 HOH A 79 1179 62 HOH HOH . C 3 HOH A 80 1180 83 HOH HOH . C 3 HOH A 81 1181 64 HOH HOH . C 3 HOH A 82 1182 44 HOH HOH . C 3 HOH A 83 1183 74 HOH HOH . C 3 HOH A 84 1184 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . B 2 -38.051 164.006 -6.126 1 12.8 ? C1 STI 1001 A 1 HETATM 2 C C6 STI . . . B 2 -38.291 162.877 -5.352 1 13.5 ? C6 STI 1001 A 1 HETATM 3 C C5 STI . . . B 2 -38.551 163.018 -3.999 1 13.82 ? C5 STI 1001 A 1 HETATM 4 C C4 STI . . . B 2 -38.563 164.282 -3.447 1 12.28 ? C4 STI 1001 A 1 HETATM 5 N N3 STI . . . B 2 -38.322 165.41 -4.214 1 16.59 ? N3 STI 1001 A 1 HETATM 6 C C2 STI . . . B 2 -38.07 165.275 -5.568 1 14.79 ? C2 STI 1001 A 1 HETATM 7 C C7 STI . . . B 2 -38.78 161.906 -3.192 1 13.28 ? C7 STI 1001 A 1 HETATM 8 C C12 STI . . . B 2 -38.53 160.641 -3.683 1 12.53 ? C12 STI 1001 A 1 HETATM 9 C C11 STI . . . B 2 -38.745 159.544 -2.881 1 11.25 ? C11 STI 1001 A 1 HETATM 10 N N10 STI . . . B 2 -39.188 159.732 -1.593 1 13.61 ? N10 STI 1001 A 1 HETATM 11 C C9 STI . . . B 2 -39.416 160.959 -1.137 1 13.8 ? C9 STI 1001 A 1 HETATM 12 N N8 STI . . . B 2 -39.203 162.026 -1.934 1 14.35 ? N8 STI 1001 A 1 HETATM 13 N N13 STI . . . B 2 -39.844 161.167 0.103 1 13.94 ? N13 STI 1001 A 1 HETATM 14 C C14 STI . . . B 2 -40.22 160.196 0.948 1 11.83 ? C14 STI 1001 A 1 HETATM 15 C C19 STI . . . B 2 -41.594 160.061 1.139 1 14.5 ? C19 STI 1001 A 1 HETATM 16 C C18 STI . . . B 2 -42.058 159.102 2.008 1 13.62 ? C18 STI 1001 A 1 HETATM 17 C C17 STI . . . B 2 -41.181 158.298 2.714 1 16.06 ? C17 STI 1001 A 1 HETATM 18 C C16 STI . . . B 2 -39.813 158.407 2.561 1 14.35 ? C16 STI 1001 A 1 HETATM 19 C C15 STI . . . B 2 -39.343 159.386 1.678 1 13.84 ? C15 STI 1001 A 1 HETATM 20 N N21 STI . . . B 2 -39.06 157.59 3.33 1 16.07 ? N21 STI 1001 A 1 HETATM 21 C C22 STI . . . B 2 -37.727 157.474 3.224 1 16.23 ? C22 STI 1001 A 1 HETATM 22 C C23 STI . . . B 2 -37.109 156.61 4.15 1 15.14 ? C23 STI 1001 A 1 HETATM 23 C C25 STI . . . B 2 -35.771 156.816 4.46 1 17.19 ? C25 STI 1001 A 1 HETATM 24 C C26 STI . . . B 2 -35.087 156.013 5.371 1 17.5 ? C26 STI 1001 A 1 HETATM 25 C C27 STI . . . B 2 -35.742 154.982 6.024 1 18.42 ? C27 STI 1001 A 1 HETATM 26 C C28 STI . . . B 2 -37.089 154.783 5.741 1 21.67 ? C28 STI 1001 A 1 HETATM 27 C C29 STI . . . B 2 -37.771 155.585 4.816 1 17.17 ? C29 STI 1001 A 1 HETATM 28 C C46 STI . . . B 2 -35.044 154.184 6.952 1 22.7 ? C46 STI 1001 A 1 HETATM 29 N N48 STI . . . B 2 -35.165 152.745 6.688 1 18.8 ? N48 STI 1001 A 1 HETATM 30 C C53 STI . . . B 2 -34.674 152.386 5.359 1 16.53 ? C53 STI 1001 A 1 HETATM 31 C C52 STI . . . B 2 -34.94 150.942 5.066 1 19.15 ? C52 STI 1001 A 1 HETATM 32 N N51 STI . . . B 2 -34.302 150.092 6.074 1 22.68 ? N51 STI 1001 A 1 HETATM 33 C C54 STI . . . B 2 -34.528 148.688 5.743 1 19.67 ? C54 STI 1001 A 1 HETATM 34 C C50 STI . . . B 2 -34.778 150.426 7.422 1 19.17 ? C50 STI 1001 A 1 HETATM 35 C C49 STI . . . B 2 -34.528 151.906 7.714 1 21.45 ? C49 STI 1001 A 1 HETATM 36 O O29 STI . . . B 2 -37.045 158.083 2.417 1 15.85 ? O29 STI 1001 A 1 HETATM 37 C C20 STI . . . B 2 -42.523 160.828 0.46 1 15.05 ? C20 STI 1001 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #