data_6JOP # _model_server_result.job_id BiFtYKPYYEPY73mne4cc-A _model_server_result.datetime_utc '2024-11-24 11:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6JOP # _exptl.entry_id 6JOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.58 _cell.angle_gamma 90 _cell.entry_id 6JOP _cell.length_a 134.333 _cell.length_b 55.456 _cell.length_c 50.763 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 89 A THR 69 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc2 A O ASP 92 A ASP 72 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc3 A OD1 ASP 92 A ASP 72 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc4 A O PHE 94 A PHE 74 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc5 A OD1 ASP 98 A ASP 78 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 A OD1 ASP 100 A ASP 80 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc7 A O GLU 162 A GLU 142 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc8 B O1A TTP . A TTP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc9 B O2B TTP . A TTP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc10 B O3G TTP . A TTP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc11 C MG MG . A MG 402 1_555 E O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc12 D MG MG . A MG 403 1_555 E O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JOP _atom_sites.fract_transf_matrix[1][1] 0.007444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000728 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TTP A 1 401 1 TTP TTP . C 3 MG A 1 402 1 MG MG . D 3 MG A 1 403 2 MG MG . E 4 HOH A 1 501 54 HOH HOH . E 4 HOH A 2 502 24 HOH HOH . E 4 HOH A 3 503 4 HOH HOH . E 4 HOH A 4 504 39 HOH HOH . E 4 HOH A 5 505 35 HOH HOH . E 4 HOH A 6 506 42 HOH HOH . E 4 HOH A 7 507 53 HOH HOH . E 4 HOH A 8 508 49 HOH HOH . E 4 HOH A 9 509 8 HOH HOH . E 4 HOH A 10 510 5 HOH HOH . E 4 HOH A 11 511 30 HOH HOH . E 4 HOH A 12 512 52 HOH HOH . E 4 HOH A 13 513 65 HOH HOH . E 4 HOH A 14 514 2 HOH HOH . E 4 HOH A 15 515 15 HOH HOH . E 4 HOH A 16 516 60 HOH HOH . E 4 HOH A 17 517 11 HOH HOH . E 4 HOH A 18 518 17 HOH HOH . E 4 HOH A 19 519 56 HOH HOH . E 4 HOH A 20 520 7 HOH HOH . E 4 HOH A 21 521 33 HOH HOH . E 4 HOH A 22 522 36 HOH HOH . E 4 HOH A 23 523 3 HOH HOH . E 4 HOH A 24 524 26 HOH HOH . E 4 HOH A 25 525 66 HOH HOH . E 4 HOH A 26 526 55 HOH HOH . E 4 HOH A 27 527 32 HOH HOH . E 4 HOH A 28 528 50 HOH HOH . E 4 HOH A 29 529 6 HOH HOH . E 4 HOH A 30 530 41 HOH HOH . E 4 HOH A 31 531 28 HOH HOH . E 4 HOH A 32 532 21 HOH HOH . E 4 HOH A 33 533 10 HOH HOH . E 4 HOH A 34 534 20 HOH HOH . E 4 HOH A 35 535 38 HOH HOH . E 4 HOH A 36 536 27 HOH HOH . E 4 HOH A 37 537 14 HOH HOH . E 4 HOH A 38 538 16 HOH HOH . E 4 HOH A 39 539 1 HOH HOH . E 4 HOH A 40 540 13 HOH HOH . E 4 HOH A 41 541 25 HOH HOH . E 4 HOH A 42 542 69 HOH HOH . E 4 HOH A 43 543 46 HOH HOH . E 4 HOH A 44 544 74 HOH HOH . E 4 HOH A 45 545 63 HOH HOH . E 4 HOH A 46 546 12 HOH HOH . E 4 HOH A 47 547 22 HOH HOH . E 4 HOH A 48 548 44 HOH HOH . E 4 HOH A 49 549 18 HOH HOH . E 4 HOH A 50 550 62 HOH HOH . E 4 HOH A 51 551 67 HOH HOH . E 4 HOH A 52 552 58 HOH HOH . E 4 HOH A 53 553 37 HOH HOH . E 4 HOH A 54 554 64 HOH HOH . E 4 HOH A 55 555 43 HOH HOH . E 4 HOH A 56 556 48 HOH HOH . E 4 HOH A 57 557 31 HOH HOH . E 4 HOH A 58 558 47 HOH HOH . E 4 HOH A 59 559 59 HOH HOH . E 4 HOH A 60 560 68 HOH HOH . E 4 HOH A 61 561 51 HOH HOH . E 4 HOH A 62 562 9 HOH HOH . E 4 HOH A 63 563 57 HOH HOH . E 4 HOH A 64 564 72 HOH HOH . E 4 HOH A 65 565 75 HOH HOH . E 4 HOH A 66 566 34 HOH HOH . E 4 HOH A 67 567 40 HOH HOH . E 4 HOH A 68 568 73 HOH HOH . E 4 HOH A 69 569 19 HOH HOH . E 4 HOH A 70 570 61 HOH HOH . E 4 HOH A 71 571 71 HOH HOH . E 4 HOH A 72 572 23 HOH HOH . E 4 HOH A 73 573 70 HOH HOH . E 4 HOH A 74 574 29 HOH HOH . E 4 HOH A 75 575 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.33 _atom_site.Cartn_y -2.817 _atom_site.Cartn_z 28.52 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #