data_6JPJ # _model_server_result.job_id 8ydJ4lqXNnavwrd3WvO1jw _model_server_result.datetime_utc '2024-12-05 01:21:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 6JPJ # _exptl.entry_id 6JPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.557 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[5-cyano-4-(2-methoxyethylamino)pyridin-2-yl]-7-methanoyl-6-[(4-methyl-2-oxidanylidene-piperazin-1-yl)methyl]-3,4-dihydro-2H-1,8-naphthyridine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.56 _cell.angle_gamma 90 _cell.entry_id 6JPJ _cell.length_a 42.275 _cell.length_b 60.931 _cell.length_c 61.154 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 552 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAL _struct_conn.ptnr2_label_comp_id FGF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FGF _struct_conn.ptnr2_auth_seq_id 800 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.772 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H30 N8 O4' _chem_comp.formula_weight 506.557 _chem_comp.id FGF _chem_comp.mon_nstd_flag . _chem_comp.name N-[5-cyano-4-(2-methoxyethylamino)pyridin-2-yl]-7-methanoyl-6-[(4-methyl-2-oxidanylidene-piperazin-1-yl)methyl]-3,4-dihydro-2H-1,8-naphthyridine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Roblitinib;FGF-401 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBI CBH FGF sing 83 n n CBI OBJ FGF sing 84 n n NBF CBE FGF trip 85 n n CBH NBG FGF sing 86 n n CBK OBJ FGF sing 87 n n CBE CBB FGF sing 88 n n NBG CBA FGF sing 89 n n CBB CBA FGF doub 90 n y CBB CBC FGF sing 91 n y CBA CAZ FGF sing 92 n y CBC NBD FGF doub 93 n y CAZ CAY FGF doub 94 n y NBD CAY FGF sing 95 n y CAY NAW FGF sing 96 n n OAX CAK FGF doub 97 n n NAW CAK FGF sing 98 n n CAK NAJ FGF sing 99 n n NAJ CAI FGF sing 100 n n NAJ CAD FGF sing 101 n n CAI CAH FGF sing 102 n n NAE CAD FGF doub 103 n y NAE CAF FGF sing 104 n y CAD CAC FGF sing 105 n y CAH CAG FGF sing 106 n n CAL OAV FGF doub 107 n n CAL CAF FGF sing 108 n n CAF CAA FGF doub 109 n y CAC CAG FGF sing 110 n n CAC CAB FGF doub 111 n y CAA CAB FGF sing 112 n y CAA CAM FGF sing 113 n n CAM NAN FGF sing 114 n n NAN CAO FGF sing 115 n n NAN C FGF sing 116 n n CAO CAP FGF sing 117 n n O C FGF doub 118 n n C CA FGF sing 119 n n CAP N FGF sing 120 n n N CA FGF sing 121 n n N CAT FGF sing 122 n n CA H1 FGF sing 123 n n CA H2 FGF sing 124 n n CAT H4 FGF sing 125 n n CAT H5 FGF sing 126 n n CAT H6 FGF sing 127 n n CAP H7 FGF sing 128 n n CAP H8 FGF sing 129 n n CAO H9 FGF sing 130 n n CAO H10 FGF sing 131 n n CAM H11 FGF sing 132 n n CAM H12 FGF sing 133 n n CAB H13 FGF sing 134 n n CAL H14 FGF sing 135 n n CAG H17 FGF sing 136 n n CAG H18 FGF sing 137 n n CAH H19 FGF sing 138 n n CAH H20 FGF sing 139 n n CAI H21 FGF sing 140 n n CAI H22 FGF sing 141 n n NAW H23 FGF sing 142 n n CAZ H24 FGF sing 143 n n CBC H25 FGF sing 144 n n NBG H26 FGF sing 145 n n CBH H27 FGF sing 146 n n CBH H28 FGF sing 147 n n CBI H29 FGF sing 148 n n CBI H30 FGF sing 149 n n CBK H31 FGF sing 150 n n CBK H32 FGF sing 151 n n CBK H33 FGF sing 152 n n # _atom_sites.entry_id 6JPJ _atom_sites.fract_transf_matrix[1][1] 0.023655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FGF A 1 800 800 FGF DRG . C 3 SO4 A 1 801 801 SO4 SO4 . D 3 SO4 A 1 802 802 SO4 SO4 . E 4 HOH A 1 901 911 HOH HOH . E 4 HOH A 2 902 913 HOH HOH . E 4 HOH A 3 903 925 HOH HOH . E 4 HOH A 4 904 901 HOH HOH . E 4 HOH A 5 905 928 HOH HOH . E 4 HOH A 6 906 907 HOH HOH . E 4 HOH A 7 907 916 HOH HOH . E 4 HOH A 8 908 926 HOH HOH . E 4 HOH A 9 909 923 HOH HOH . E 4 HOH A 10 910 905 HOH HOH . E 4 HOH A 11 911 904 HOH HOH . E 4 HOH A 12 912 906 HOH HOH . E 4 HOH A 13 913 908 HOH HOH . E 4 HOH A 14 914 944 HOH HOH . E 4 HOH A 15 915 917 HOH HOH . E 4 HOH A 16 916 909 HOH HOH . E 4 HOH A 17 917 914 HOH HOH . E 4 HOH A 18 918 938 HOH HOH . E 4 HOH A 19 919 912 HOH HOH . E 4 HOH A 20 920 910 HOH HOH . E 4 HOH A 21 921 931 HOH HOH . E 4 HOH A 22 922 933 HOH HOH . E 4 HOH A 23 923 936 HOH HOH . E 4 HOH A 24 924 900 HOH HOH . E 4 HOH A 25 925 939 HOH HOH . E 4 HOH A 26 926 922 HOH HOH . E 4 HOH A 27 927 915 HOH HOH . E 4 HOH A 28 928 902 HOH HOH . E 4 HOH A 29 929 927 HOH HOH . E 4 HOH A 30 930 935 HOH HOH . E 4 HOH A 31 931 921 HOH HOH . E 4 HOH A 32 932 930 HOH HOH . E 4 HOH A 33 933 942 HOH HOH . E 4 HOH A 34 934 932 HOH HOH . E 4 HOH A 35 935 919 HOH HOH . E 4 HOH A 36 936 943 HOH HOH . E 4 HOH A 37 937 903 HOH HOH . E 4 HOH A 38 938 929 HOH HOH . E 4 HOH A 39 939 941 HOH HOH . E 4 HOH A 40 940 924 HOH HOH . E 4 HOH A 41 941 918 HOH HOH . E 4 HOH A 42 942 920 HOH HOH . E 4 HOH A 43 943 940 HOH HOH . E 4 HOH A 44 944 937 HOH HOH . E 4 HOH A 45 945 934 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O FGF . . . B 2 87.482 1.491 93.082 1 41.05 ? O FGF 800 A 1 HETATM 2 C C FGF . . . B 2 87.634 2.655 93.317 1 40.12 ? C FGF 800 A 1 HETATM 3 C CA FGF . . . B 2 87.198 3.14 94.511 1 40.07 ? CA FGF 800 A 1 HETATM 4 N N FGF . . . B 2 86.775 4.512 94.4 1 39.93 ? N FGF 800 A 1 HETATM 5 C CAT FGF . . . B 2 86.224 5.002 95.636 1 40.37 ? CAT FGF 800 A 1 HETATM 6 C CAP FGF . . . B 2 87.983 5.212 94.095 1 39.84 ? CAP FGF 800 A 1 HETATM 7 C CAO FGF . . . B 2 88.442 4.819 92.749 1 39.89 ? CAO FGF 800 A 1 HETATM 8 N NAN FGF . . . B 2 88.232 3.42 92.43 1 39.85 ? NAN FGF 800 A 1 HETATM 9 C CAM FGF . . . B 2 88.701 2.916 91.151 1 39.96 ? CAM FGF 800 A 1 HETATM 10 C CAA FGF . . . B 2 87.822 3.051 90.078 1 39.33 ? CAA FGF 800 A 1 HETATM 11 C CAB FGF . . . B 2 86.464 3.116 90.245 1 38.14 ? CAB FGF 800 A 1 HETATM 12 C CAF FGF . . . B 2 88.331 3.093 88.807 1 38.53 ? CAF FGF 800 A 1 HETATM 13 C CAL FGF . . . B 2 89.683 3.045 88.595 1 39.02 ? CAL FGF 800 A 1 HETATM 14 O OAV FGF . . . B 2 90.052 1.697 88.6 1 39.56 ? OAV FGF 800 A 1 HETATM 15 N NAE FGF . . . B 2 87.523 3.204 87.777 1 37.05 ? NAE FGF 800 A 1 HETATM 16 C CAD FGF . . . B 2 86.227 3.275 87.912 1 37.14 ? CAD FGF 800 A 1 HETATM 17 C CAC FGF . . . B 2 85.663 3.222 89.149 1 36.92 ? CAC FGF 800 A 1 HETATM 18 C CAG FGF . . . B 2 84.321 3.273 89.327 1 36.68 ? CAG FGF 800 A 1 HETATM 19 C CAH FGF . . . B 2 83.685 4.076 88.298 1 36.75 ? CAH FGF 800 A 1 HETATM 20 C CAI FGF . . . B 2 84.04 3.55 86.996 1 36.73 ? CAI FGF 800 A 1 HETATM 21 N NAJ FGF . . . B 2 85.471 3.362 86.818 1 36.99 ? NAJ FGF 800 A 1 HETATM 22 C CAK FGF . . . B 2 85.948 3.144 85.589 1 36.17 ? CAK FGF 800 A 1 HETATM 23 O OAX FGF . . . B 2 85.217 3.156 84.62 1 34.97 ? OAX FGF 800 A 1 HETATM 24 N NAW FGF . . . B 2 87.254 2.956 85.459 1 36.34 ? NAW FGF 800 A 1 HETATM 25 C CAY FGF . . . B 2 87.875 2.661 84.335 1 34 ? CAY FGF 800 A 1 HETATM 26 C CAZ FGF . . . B 2 87.268 1.946 83.352 1 33.61 ? CAZ FGF 800 A 1 HETATM 27 N NBD FGF . . . B 2 89.142 2.991 84.211 1 32.1 ? NBD FGF 800 A 1 HETATM 28 C CBC FGF . . . B 2 89.851 2.665 83.087 1 30.75 ? CBC FGF 800 A 1 HETATM 29 C CBB FGF . . . B 2 89.272 1.961 82.073 1 31.27 ? CBB FGF 800 A 1 HETATM 30 C CBE FGF . . . B 2 89.99 1.661 80.954 1 31.19 ? CBE FGF 800 A 1 HETATM 31 N NBF FGF . . . B 2 90.501 1.456 80.175 1 30.81 ? NBF FGF 800 A 1 HETATM 32 C CBA FGF . . . B 2 87.973 1.607 82.237 1 33.02 ? CBA FGF 800 A 1 HETATM 33 N NBG FGF . . . B 2 87.409 0.968 81.301 1 34.3 ? NBG FGF 800 A 1 HETATM 34 C CBH FGF . . . B 2 86.508 1.691 80.467 1 35.97 ? CBH FGF 800 A 1 HETATM 35 C CBI FGF . . . B 2 85.508 0.722 79.947 1 39.09 ? CBI FGF 800 A 1 HETATM 36 O OBJ FGF . . . B 2 84.755 0.222 80.998 1 41.6 ? OBJ FGF 800 A 1 HETATM 37 C CBK FGF . . . B 2 84.728 -1.146 80.72 1 43.52 ? CBK FGF 800 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #