data_6JQ0 # _model_server_result.job_id ra77VmzKjEcjcd2ZmnmhnA _model_server_result.datetime_utc '2024-10-11 02:24:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1201}' # _entry.id 6JQ0 # _exptl.entry_id 6JQ0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JQ0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CA GLY 318 A GLY 310 1_555 H O1B ADP . A ADP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale2 A CD1 LEU 323 A LEU 315 1_555 H O2' ADP . A ADP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale3 A CD1 ILE 455 A ILE 447 1_555 H N6 ADP . A ADP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 B N GLY 318 B GLY 310 1_555 I O2B ATP . B ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale5 B N GLY 320 B GLY 312 1_555 I O1A ATP . B ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? covale ? covale6 B CB LYS 321 B LYS 313 1_555 I O1B ATP . B ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale7 B CD1 ILE 455 B ILE 447 1_555 I N6 ATP . B ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale8 C N GLY 318 C GLY 310 1_555 J O2B ATP . C ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale9 C N LYS 321 C LYS 313 1_555 J O1A ATP . C ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale10 C CD1 ILE 455 C ILE 447 1_555 J N6 ATP . C ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale11 C O GLY 484 C GLY 476 1_555 J N9 ATP . C ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale12 D N GLY 318 D GLY 310 1_555 K O2B ATP . D ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale13 D N LYS 321 D LYS 313 1_555 K O1A ATP . D ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale14 D CD1 ILE 455 D ILE 447 1_555 K N6 ATP . D ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale15 D NE2 HIS 459 D HIS 451 1_555 K C2 ATP . D ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale16 E N GLY 318 E GLY 310 1_555 L O2B ATP . E ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale17 E N LYS 321 E LYS 313 1_555 L O1A ATP . E ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale18 E CD1 ILE 455 E ILE 447 1_555 L N6 ATP . E ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale19 E NE2 HIS 459 E HIS 451 1_555 L C2 ATP . E ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale20 F N GLY 318 F GLY 310 1_555 M O2B ATP . F ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale21 F N LYS 321 F LYS 313 1_555 M O1A ATP . F ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale22 F CD1 ILE 455 F ILE 447 1_555 M N6 ATP . F ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale23 F NE2 HIS 459 F HIS 451 1_555 M C2 ATP . F ATP 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JQ0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ADP A 1 1201 5093 ADP ADP . I 4 ATP B 1 1201 5093 ATP ATP . J 4 ATP C 1 1201 5093 ATP ATP . K 4 ATP D 1 1201 5093 ATP ATP . L 4 ATP E 1 1201 5093 ATP ATP . M 4 ATP F 1 1201 5093 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 3 160.918 167.339 188.933 1 160.42 0 PB ADP 1201 A 1 HETATM 2 O O1B ADP . . . H 3 161.097 166.723 187.568 1 160.42 0 O1B ADP 1201 A 1 HETATM 3 O O2B ADP . . . H 3 160.946 168.844 188.944 1 160.42 -1 O2B ADP 1201 A 1 HETATM 4 O O3B ADP . . . H 3 161.762 166.733 190.023 1 160.42 0 O3B ADP 1201 A 1 HETATM 5 P PA ADP . . . H 3 158.955 166.558 190.812 1 160.42 0 PA ADP 1201 A 1 HETATM 6 O O1A ADP . . . H 3 159.578 165.243 191.208 1 160.42 -1 O1A ADP 1201 A 1 HETATM 7 O O2A ADP . . . H 3 159.254 167.78 191.639 1 160.42 0 O2A ADP 1201 A 1 HETATM 8 O O3A ADP . . . H 3 159.403 166.931 189.309 1 160.42 0 O3A ADP 1201 A 1 HETATM 9 O O5' ADP . . . H 3 157.346 166.389 190.702 1 160.42 0 O5' ADP 1201 A 1 HETATM 10 C C5' ADP . . . H 3 156.458 167.458 191.063 1 160.42 0 C5' ADP 1201 A 1 HETATM 11 C C4' ADP . . . H 3 155.008 167.035 191.353 1 160.42 0 C4' ADP 1201 A 1 HETATM 12 O O4' ADP . . . H 3 154.332 166.429 190.236 1 160.42 0 O4' ADP 1201 A 1 HETATM 13 C C3' ADP . . . H 3 154.934 166.053 192.503 1 160.42 0 C3' ADP 1201 A 1 HETATM 14 O O3' ADP . . . H 3 154.026 166.549 193.486 1 160.42 0 O3' ADP 1201 A 1 HETATM 15 C C2' ADP . . . H 3 154.368 164.793 191.89 1 160.42 0 C2' ADP 1201 A 1 HETATM 16 O O2' ADP . . . H 3 153.517 164.103 192.814 1 160.42 0 O2' ADP 1201 A 1 HETATM 17 C C1' ADP . . . H 3 153.648 165.236 190.632 1 160.42 0 C1' ADP 1201 A 1 HETATM 18 N N9 ADP . . . H 3 153.777 164.226 189.55 1 160.42 0 N9 ADP 1201 A 1 HETATM 19 C C8 ADP . . . H 3 154.216 164.506 188.319 1 160.42 0 C8 ADP 1201 A 1 HETATM 20 N N7 ADP . . . H 3 154.226 163.408 187.53 1 160.42 0 N7 ADP 1201 A 1 HETATM 21 C C5 ADP . . . H 3 153.776 162.385 188.256 1 160.42 0 C5 ADP 1201 A 1 HETATM 22 C C6 ADP . . . H 3 153.538 160.946 188.019 1 160.42 0 C6 ADP 1201 A 1 HETATM 23 N N6 ADP . . . H 3 153.776 160.374 186.814 1 160.42 0 N6 ADP 1201 A 1 HETATM 24 N N1 ADP . . . H 3 153.062 160.215 189.046 1 160.42 0 N1 ADP 1201 A 1 HETATM 25 C C2 ADP . . . H 3 152.808 160.766 190.243 1 160.42 0 C2 ADP 1201 A 1 HETATM 26 N N3 ADP . . . H 3 153 162.065 190.517 1 160.42 0 N3 ADP 1201 A 1 HETATM 27 C C4 ADP . . . H 3 153.475 162.924 189.588 1 160.42 0 C4 ADP 1201 A 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #