data_6JQ8
#
_model_server_result.job_id            D9dOtvo-8R8OpJdG5GJx8Q 
_model_server_result.datetime_utc      '2024-12-04 04:42:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jq8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    6JQ8 
#
_exptl.entry_id    6JQ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              442.216 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JQ8 
_cell.length_a            80.526 
_cell.length_b            80.526 
_cell.length_c            53.081 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JQ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MG MG . A MG 300 1_555 C O2B GNH . A GNH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc2 B MG MG . A MG 300 1_555 D O3 CIT . A CIT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc3 B MG MG . A MG 300 1_555 D O5 CIT . A CIT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc4 B MG MG . A MG 300 1_555 D O7 CIT . A CIT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc5 B MG MG . A MG 300 1_555 F O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc6 B MG MG . A MG 300 1_555 F O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
#
_chem_comp.formula           'C10 H16 N6 O10 P2' 
_chem_comp.formula_weight    442.216 
_chem_comp.id                GNH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3B PB GNH sing 149 n n 
N3B HN31 GNH sing 150 n n 
N3B HN32 GNH sing 151 n n 
PB O1B GNH doub 152 n n 
PB O2B GNH sing 153 n n 
PB O3A GNH sing 154 n n 
O2B HOB2 GNH sing 155 n n 
O3A PA GNH sing 156 n n 
PA O1A GNH doub 157 n n 
PA O2A GNH sing 158 n n 
PA O5' GNH sing 159 n n 
O2A HOA2 GNH sing 160 n n 
O5' C5' GNH sing 161 n n 
C5' C4' GNH sing 162 n n 
C5' "H5'2" GNH sing 163 n n 
C5' "H5'1" GNH sing 164 n n 
C4' O4' GNH sing 165 n n 
C4' C3' GNH sing 166 n n 
C4' H4' GNH sing 167 n n 
O4' C1' GNH sing 168 n n 
C3' O3' GNH sing 169 n n 
C3' C2' GNH sing 170 n n 
C3' H3' GNH sing 171 n n 
O3' HO3' GNH sing 172 n n 
C2' O2' GNH sing 173 n n 
C2' C1' GNH sing 174 n n 
C2' H2' GNH sing 175 n n 
O2' HO2' GNH sing 176 n n 
C1' N9 GNH sing 177 n n 
C1' H1' GNH sing 178 n n 
N9 C8 GNH sing 179 n y 
N9 C4 GNH sing 180 n y 
C8 N7 GNH doub 181 n y 
C8 H8 GNH sing 182 n n 
N7 C5 GNH sing 183 n y 
C5 C6 GNH sing 184 n y 
C5 C4 GNH doub 185 n y 
C6 O6 GNH doub 186 n n 
C6 N1 GNH sing 187 n y 
N1 C2 GNH sing 188 n y 
N1 HN1 GNH sing 189 n n 
C2 N2 GNH sing 190 n n 
C2 N3 GNH doub 191 n y 
N2 HN21 GNH sing 192 n n 
N2 HN22 GNH sing 193 n n 
N3 C4 GNH sing 194 n y 
#
_atom_sites.entry_id                     6JQ8 
_atom_sites.fract_transf_matrix[1][1]    0.012418 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012418 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018839 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 300 300 MG MG . 
C 3 GNH A 1 301 301 GNH GNP . 
D 4 CIT A 1 302 302 CIT CIT . 
E 4 CIT A 1 303 303 CIT CIT . 
F 5 HOH A 1 401 79 HOH HOH . 
F 5 HOH A 2 402 154 HOH HOH . 
F 5 HOH A 3 403 131 HOH HOH . 
F 5 HOH A 4 404 148 HOH HOH . 
F 5 HOH A 5 405 53 HOH HOH . 
F 5 HOH A 6 406 128 HOH HOH . 
F 5 HOH A 7 407 136 HOH HOH . 
F 5 HOH A 8 408 133 HOH HOH . 
F 5 HOH A 9 409 52 HOH HOH . 
F 5 HOH A 10 410 124 HOH HOH . 
F 5 HOH A 11 411 123 HOH HOH . 
F 5 HOH A 12 412 151 HOH HOH . 
F 5 HOH A 13 413 60 HOH HOH . 
F 5 HOH A 14 414 156 HOH HOH . 
F 5 HOH A 15 415 114 HOH HOH . 
F 5 HOH A 16 416 86 HOH HOH . 
F 5 HOH A 17 417 118 HOH HOH . 
F 5 HOH A 18 418 1 HOH HOH . 
F 5 HOH A 19 419 57 HOH HOH . 
F 5 HOH A 20 420 23 HOH HOH . 
F 5 HOH A 21 421 40 HOH HOH . 
F 5 HOH A 22 422 137 HOH HOH . 
F 5 HOH A 23 423 4 HOH HOH . 
F 5 HOH A 24 424 2 HOH HOH . 
F 5 HOH A 25 425 26 HOH HOH . 
F 5 HOH A 26 426 90 HOH HOH . 
F 5 HOH A 27 427 54 HOH HOH . 
F 5 HOH A 28 428 59 HOH HOH . 
F 5 HOH A 29 429 36 HOH HOH . 
F 5 HOH A 30 430 14 HOH HOH . 
F 5 HOH A 31 431 143 HOH HOH . 
F 5 HOH A 32 432 125 HOH HOH . 
F 5 HOH A 33 433 9 HOH HOH . 
F 5 HOH A 34 434 122 HOH HOH . 
F 5 HOH A 35 435 19 HOH HOH . 
F 5 HOH A 36 436 97 HOH HOH . 
F 5 HOH A 37 437 67 HOH HOH . 
F 5 HOH A 38 438 8 HOH HOH . 
F 5 HOH A 39 439 73 HOH HOH . 
F 5 HOH A 40 440 30 HOH HOH . 
F 5 HOH A 41 441 109 HOH HOH . 
F 5 HOH A 42 442 85 HOH HOH . 
F 5 HOH A 43 443 13 HOH HOH . 
F 5 HOH A 44 444 61 HOH HOH . 
F 5 HOH A 45 445 34 HOH HOH . 
F 5 HOH A 46 446 101 HOH HOH . 
F 5 HOH A 47 447 44 HOH HOH . 
F 5 HOH A 48 448 7 HOH HOH . 
F 5 HOH A 49 449 18 HOH HOH . 
F 5 HOH A 50 450 43 HOH HOH . 
F 5 HOH A 51 451 20 HOH HOH . 
F 5 HOH A 52 452 65 HOH HOH . 
F 5 HOH A 53 453 10 HOH HOH . 
F 5 HOH A 54 454 29 HOH HOH . 
F 5 HOH A 55 455 71 HOH HOH . 
F 5 HOH A 56 456 28 HOH HOH . 
F 5 HOH A 57 457 91 HOH HOH . 
F 5 HOH A 58 458 6 HOH HOH . 
F 5 HOH A 59 459 75 HOH HOH . 
F 5 HOH A 60 460 76 HOH HOH . 
F 5 HOH A 61 461 108 HOH HOH . 
F 5 HOH A 62 462 47 HOH HOH . 
F 5 HOH A 63 463 37 HOH HOH . 
F 5 HOH A 64 464 68 HOH HOH . 
F 5 HOH A 65 465 55 HOH HOH . 
F 5 HOH A 66 466 84 HOH HOH . 
F 5 HOH A 67 467 27 HOH HOH . 
F 5 HOH A 68 468 46 HOH HOH . 
F 5 HOH A 69 469 82 HOH HOH . 
F 5 HOH A 70 470 138 HOH HOH . 
F 5 HOH A 71 471 70 HOH HOH . 
F 5 HOH A 72 472 110 HOH HOH . 
F 5 HOH A 73 473 48 HOH HOH . 
F 5 HOH A 74 474 88 HOH HOH . 
F 5 HOH A 75 475 31 HOH HOH . 
F 5 HOH A 76 476 58 HOH HOH . 
F 5 HOH A 77 477 112 HOH HOH . 
F 5 HOH A 78 478 63 HOH HOH . 
F 5 HOH A 79 479 38 HOH HOH . 
F 5 HOH A 80 480 77 HOH HOH . 
F 5 HOH A 81 481 116 HOH HOH . 
F 5 HOH A 82 482 153 HOH HOH . 
F 5 HOH A 83 483 22 HOH HOH . 
F 5 HOH A 84 484 15 HOH HOH . 
F 5 HOH A 85 485 17 HOH HOH . 
F 5 HOH A 86 486 96 HOH HOH . 
F 5 HOH A 87 487 107 HOH HOH . 
F 5 HOH A 88 488 69 HOH HOH . 
F 5 HOH A 89 489 24 HOH HOH . 
F 5 HOH A 90 490 25 HOH HOH . 
F 5 HOH A 91 491 51 HOH HOH . 
F 5 HOH A 92 492 94 HOH HOH . 
F 5 HOH A 93 493 16 HOH HOH . 
F 5 HOH A 94 494 115 HOH HOH . 
F 5 HOH A 95 495 119 HOH HOH . 
F 5 HOH A 96 496 49 HOH HOH . 
F 5 HOH A 97 497 117 HOH HOH . 
F 5 HOH A 98 498 105 HOH HOH . 
F 5 HOH A 99 499 87 HOH HOH . 
F 5 HOH A 100 500 50 HOH HOH . 
F 5 HOH A 101 501 139 HOH HOH . 
F 5 HOH A 102 502 32 HOH HOH . 
F 5 HOH A 103 503 78 HOH HOH . 
F 5 HOH A 104 504 135 HOH HOH . 
F 5 HOH A 105 505 89 HOH HOH . 
F 5 HOH A 106 506 147 HOH HOH . 
F 5 HOH A 107 507 100 HOH HOH . 
F 5 HOH A 108 508 102 HOH HOH . 
F 5 HOH A 109 509 134 HOH HOH . 
F 5 HOH A 110 510 140 HOH HOH . 
F 5 HOH A 111 511 3 HOH HOH . 
F 5 HOH A 112 512 33 HOH HOH . 
F 5 HOH A 113 513 104 HOH HOH . 
F 5 HOH A 114 514 62 HOH HOH . 
F 5 HOH A 115 515 129 HOH HOH . 
F 5 HOH A 116 516 145 HOH HOH . 
F 5 HOH A 117 517 81 HOH HOH . 
F 5 HOH A 118 518 42 HOH HOH . 
F 5 HOH A 119 519 66 HOH HOH . 
F 5 HOH A 120 520 64 HOH HOH . 
F 5 HOH A 121 521 12 HOH HOH . 
F 5 HOH A 122 522 11 HOH HOH . 
F 5 HOH A 123 523 5 HOH HOH . 
F 5 HOH A 124 524 103 HOH HOH . 
F 5 HOH A 125 525 45 HOH HOH . 
F 5 HOH A 126 526 121 HOH HOH . 
F 5 HOH A 127 527 93 HOH HOH . 
F 5 HOH A 128 528 155 HOH HOH . 
F 5 HOH A 129 529 74 HOH HOH . 
F 5 HOH A 130 530 144 HOH HOH . 
F 5 HOH A 131 531 83 HOH HOH . 
F 5 HOH A 132 532 92 HOH HOH . 
F 5 HOH A 133 533 21 HOH HOH . 
F 5 HOH A 134 534 150 HOH HOH . 
F 5 HOH A 135 535 132 HOH HOH . 
F 5 HOH A 136 536 72 HOH HOH . 
F 5 HOH A 137 537 127 HOH HOH . 
F 5 HOH A 138 538 120 HOH HOH . 
F 5 HOH A 139 539 35 HOH HOH . 
F 5 HOH A 140 540 142 HOH HOH . 
F 5 HOH A 141 541 146 HOH HOH . 
F 5 HOH A 142 542 41 HOH HOH . 
F 5 HOH A 143 543 111 HOH HOH . 
F 5 HOH A 144 544 39 HOH HOH . 
F 5 HOH A 145 545 149 HOH HOH . 
F 5 HOH A 146 546 80 HOH HOH . 
F 5 HOH A 147 547 106 HOH HOH . 
F 5 HOH A 148 548 152 HOH HOH . 
F 5 HOH A 149 549 130 HOH HOH . 
F 5 HOH A 150 550 98 HOH HOH . 
F 5 HOH A 151 551 95 HOH HOH . 
F 5 HOH A 152 552 113 HOH HOH . 
F 5 HOH A 153 553 141 HOH HOH . 
F 5 HOH A 154 554 126 HOH HOH . 
F 5 HOH A 155 555 99 HOH HOH . 
F 5 HOH A 156 556 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3B GNH . . . C 3 0.202 -25.216 7.281 1 28.6 ? N3B GNH 301 A 1 
HETATM 2 P PB GNH . . . C 3 1.716 -25.746 7.645 1 29.48 ? PB GNH 301 A 1 
HETATM 3 O O1B GNH . . . C 3 2.683 -24.594 7.801 1 28.37 ? O1B GNH 301 A 1 
HETATM 4 O O2B GNH . . . C 3 1.699 -26.602 8.898 1 21.18 ? O2B GNH 301 A 1 
HETATM 5 O O3A GNH . . . C 3 2.321 -26.748 6.522 1 23.51 ? O3A GNH 301 A 1 
HETATM 6 P PA GNH . . . C 3 2.973 -26.396 5.126 1 18.71 ? PA GNH 301 A 1 
HETATM 7 O O1A GNH . . . C 3 2.443 -25.051 4.636 1 19.48 ? O1A GNH 301 A 1 
HETATM 8 O O2A GNH . . . C 3 4.426 -26.575 5.166 1 21.56 ? O2A GNH 301 A 1 
HETATM 9 O O5' GNH . . . C 3 2.322 -27.525 4.259 1 18.38 ? O5' GNH 301 A 1 
HETATM 10 C C5' GNH . . . C 3 0.926 -27.471 3.892 1 17.37 ? C5' GNH 301 A 1 
HETATM 11 C C4' GNH . . . C 3 0.561 -28.792 3.269 1 15.14 ? C4' GNH 301 A 1 
HETATM 12 O O4' GNH . . . C 3 1.426 -29.029 2.136 1 14.93 ? O4' GNH 301 A 1 
HETATM 13 C C3' GNH . . . C 3 0.709 -30.002 4.193 1 14.47 ? C3' GNH 301 A 1 
HETATM 14 O O3' GNH . . . C 3 -0.394 -30.894 4.072 1 16.89 ? O3' GNH 301 A 1 
HETATM 15 C C2' GNH . . . C 3 2.04 -30.633 3.757 1 14.27 ? C2' GNH 301 A 1 
HETATM 16 O O2' GNH . . . C 3 2.019 -32.052 3.886 1 14.9 ? O2' GNH 301 A 1 
HETATM 17 C C1' GNH . . . C 3 2.137 -30.24 2.285 1 16.42 ? C1' GNH 301 A 1 
HETATM 18 N N9 GNH . . . C 3 3.519 -29.993 1.85 1 14.47 ? N9 GNH 301 A 1 
HETATM 19 C C8 GNH . . . C 3 4.447 -29.177 2.452 1 13.69 ? C8 GNH 301 A 1 
HETATM 20 N N7 GNH . . . C 3 5.582 -29.116 1.791 1 14.46 ? N7 GNH 301 A 1 
HETATM 21 C C5 GNH . . . C 3 5.389 -29.951 0.699 1 13.76 ? C5 GNH 301 A 1 
HETATM 22 C C6 GNH . . . C 3 6.263 -30.313 -0.391 1 11.85 ? C6 GNH 301 A 1 
HETATM 23 O O6 GNH . . . C 3 7.42 -29.958 -0.563 1 13.71 ? O6 GNH 301 A 1 
HETATM 24 N N1 GNH . . . C 3 5.657 -31.182 -1.275 1 13.53 ? N1 GNH 301 A 1 
HETATM 25 C C2 GNH . . . C 3 4.379 -31.658 -1.165 1 12.83 ? C2 GNH 301 A 1 
HETATM 26 N N2 GNH . . . C 3 3.957 -32.492 -2.129 1 11.35 ? N2 GNH 301 A 1 
HETATM 27 N N3 GNH . . . C 3 3.552 -31.317 -0.178 1 13.04 ? N3 GNH 301 A 1 
HETATM 28 C C4 GNH . . . C 3 4.118 -30.486 0.718 1 13.44 ? C4 GNH 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           50 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           28 
#