data_6JQN # _model_server_result.job_id RMUsOssdNsPrKAmoDBmQXA _model_server_result.datetime_utc '2024-11-22 15:22:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":801}' # _entry.id 6JQN # _exptl.entry_id 6JQN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JQN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 R N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 344 n n PA O2A NAP sing 345 n n PA O5B NAP sing 346 n n PA O3 NAP sing 347 n n O2A HOA2 NAP sing 348 n n O5B C5B NAP sing 349 n n C5B C4B NAP sing 350 n n C5B H51A NAP sing 351 n n C5B H52A NAP sing 352 n n C4B O4B NAP sing 353 n n C4B C3B NAP sing 354 n n C4B H4B NAP sing 355 n n O4B C1B NAP sing 356 n n C3B O3B NAP sing 357 n n C3B C2B NAP sing 358 n n C3B H3B NAP sing 359 n n O3B HO3A NAP sing 360 n n C2B O2B NAP sing 361 n n C2B C1B NAP sing 362 n n C2B H2B NAP sing 363 n n O2B P2B NAP sing 364 n n C1B N9A NAP sing 365 n n C1B H1B NAP sing 366 n n N9A C8A NAP sing 367 n y N9A C4A NAP sing 368 n y C8A N7A NAP doub 369 n y C8A H8A NAP sing 370 n n N7A C5A NAP sing 371 n y C5A C6A NAP sing 372 n y C5A C4A NAP doub 373 n y C6A N6A NAP sing 374 n n C6A N1A NAP doub 375 n y N6A H61A NAP sing 376 n n N6A H62A NAP sing 377 n n N1A C2A NAP sing 378 n y C2A N3A NAP doub 379 n y C2A H2A NAP sing 380 n n N3A C4A NAP sing 381 n y O3 PN NAP sing 382 n n PN O1N NAP doub 383 n n PN O2N NAP sing 384 n n PN O5D NAP sing 385 n n O5D C5D NAP sing 386 n n C5D C4D NAP sing 387 n n C5D H51N NAP sing 388 n n C5D H52N NAP sing 389 n n C4D O4D NAP sing 390 n n C4D C3D NAP sing 391 n n C4D H4D NAP sing 392 n n O4D C1D NAP sing 393 n n C3D O3D NAP sing 394 n n C3D C2D NAP sing 395 n n C3D H3D NAP sing 396 n n O3D HO3N NAP sing 397 n n C2D O2D NAP sing 398 n n C2D C1D NAP sing 399 n n C2D H2D NAP sing 400 n n O2D HO2N NAP sing 401 n n C1D N1N NAP sing 402 n n C1D H1D NAP sing 403 n n N1N C2N NAP sing 404 n y N1N C6N NAP doub 405 n y C2N C3N NAP doub 406 n y C2N H2N NAP sing 407 n n C3N C7N NAP sing 408 n n C3N C4N NAP sing 409 n y C7N O7N NAP doub 410 n n C7N N7N NAP sing 411 n n N7N H71N NAP sing 412 n n N7N H72N NAP sing 413 n n C4N C5N NAP doub 414 n y C4N H4N NAP sing 415 n n C5N C6N NAP sing 416 n y C5N H5N NAP sing 417 n n C6N H6N NAP sing 418 n n P2B O1X NAP doub 419 n n P2B O2X NAP sing 420 n n P2B O3X NAP sing 421 n n O2X HOP2 NAP sing 422 n n O3X HOP3 NAP sing 423 n n # _atom_sites.entry_id 6JQN _atom_sites.fract_transf_matrix[1][1] 0.00229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAP A 1 801 801 NAP NAP . H 3 CO8 A 1 802 802 CO8 CO8 . I 2 NAP B 1 801 801 NAP NAP . J 3 CO8 B 1 802 802 CO8 CO8 . K 2 NAP C 1 801 801 NAP NAP . L 3 CO8 C 1 802 802 CO8 CO8 . M 2 NAP D 1 801 801 NAP NAP . N 3 CO8 D 1 802 802 CO8 CO8 . O 2 NAP E 1 801 801 NAP NAP . P 3 CO8 E 1 802 802 CO8 CO8 . Q 3 CO8 F 1 802 802 CO8 CO8 . R 2 NAP F 1 801 801 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . R 2 149.089 196.028 201.461 1 63.41 ? PA NAP 801 F 1 HETATM 2 O O1A NAP . . . R 2 148.597 196.163 202.877 1 63.41 ? O1A NAP 801 F 1 HETATM 3 O O2A NAP . . . R 2 147.924 195.988 200.507 1 63.41 ? O2A NAP 801 F 1 HETATM 4 O O5B NAP . . . R 2 149.924 194.668 201.306 1 63.41 ? O5B NAP 801 F 1 HETATM 5 C C5B NAP . . . R 2 151.061 194.414 202.125 1 63.41 ? C5B NAP 801 F 1 HETATM 6 C C4B NAP . . . R 2 151.595 192.997 201.941 1 63.41 ? C4B NAP 801 F 1 HETATM 7 O O4B NAP . . . R 2 150.974 192.11 202.872 1 63.41 ? O4B NAP 801 F 1 HETATM 8 C C3B NAP . . . R 2 151.313 192.438 200.565 1 63.41 ? C3B NAP 801 F 1 HETATM 9 O O3B NAP . . . R 2 152.474 191.735 200.136 1 63.41 ? O3B NAP 801 F 1 HETATM 10 C C2B NAP . . . R 2 150.182 191.46 200.776 1 63.41 ? C2B NAP 801 F 1 HETATM 11 O O2B NAP . . . R 2 150.266 190.376 199.864 1 63.41 ? O2B NAP 801 F 1 HETATM 12 C C1B NAP . . . R 2 150.355 191.011 202.209 1 63.41 ? C1B NAP 801 F 1 HETATM 13 N N9A NAP . . . R 2 149.042 190.799 202.849 1 63.41 ? N9A NAP 801 F 1 HETATM 14 C C8A NAP . . . R 2 147.929 191.506 202.601 1 63.41 ? C8A NAP 801 F 1 HETATM 15 N N7A NAP . . . R 2 146.898 191.07 203.367 1 63.41 ? N7A NAP 801 F 1 HETATM 16 C C5A NAP . . . R 2 147.361 190.065 204.129 1 63.41 ? C5A NAP 801 F 1 HETATM 17 C C6A NAP . . . R 2 146.802 189.162 205.157 1 63.41 ? C6A NAP 801 F 1 HETATM 18 N N6A NAP . . . R 2 145.504 189.253 205.533 1 63.41 ? N6A NAP 801 F 1 HETATM 19 N N1A NAP . . . R 2 147.63 188.247 205.705 1 63.41 ? N1A NAP 801 F 1 HETATM 20 C C2A NAP . . . R 2 148.92 188.144 205.337 1 63.41 ? C2A NAP 801 F 1 HETATM 21 N N3A NAP . . . R 2 149.491 188.932 204.413 1 63.41 ? N3A NAP 801 F 1 HETATM 22 C C4A NAP . . . R 2 148.776 189.892 203.784 1 63.41 ? C4A NAP 801 F 1 HETATM 23 O O3 NAP . . . R 2 150.022 197.278 201.092 1 63.41 ? O3 NAP 801 F 1 HETATM 24 P PN NAP . . . R 2 150.378 197.557 199.553 1 63.41 ? PN NAP 801 F 1 HETATM 25 O O1N NAP . . . R 2 150.754 196.255 198.899 1 63.41 ? O1N NAP 801 F 1 HETATM 26 O O2N NAP . . . R 2 149.161 198.148 198.889 1 63.41 ? O2N NAP 801 F 1 HETATM 27 O O5D NAP . . . R 2 151.605 198.589 199.428 1 63.41 ? O5D NAP 801 F 1 HETATM 28 C C5D NAP . . . R 2 151.405 199.999 199.448 1 63.41 ? C5D NAP 801 F 1 HETATM 29 C C4D NAP . . . R 2 151.497 200.556 200.857 1 63.41 ? C4D NAP 801 F 1 HETATM 30 O O4D NAP . . . R 2 152.758 200.219 201.433 1 63.41 ? O4D NAP 801 F 1 HETATM 31 C C3D NAP . . . R 2 151.428 202.07 200.824 1 63.41 ? C3D NAP 801 F 1 HETATM 32 O O3D NAP . . . R 2 150.443 202.518 201.754 1 63.41 ? O3D NAP 801 F 1 HETATM 33 C C2D NAP . . . R 2 152.799 202.531 201.26 1 63.41 ? C2D NAP 801 F 1 HETATM 34 O O2D NAP . . . R 2 152.697 203.705 202.061 1 63.41 ? O2D NAP 801 F 1 HETATM 35 C C1D NAP . . . R 2 153.327 201.364 202.062 1 63.41 ? C1D NAP 801 F 1 HETATM 36 N N1N NAP . . . R 2 154.782 201.302 202.003 1 63.41 ? N1N NAP 801 F 1 HETATM 37 C C2N NAP . . . R 2 155.481 201.53 203.112 1 63.41 ? C2N NAP 801 F 1 HETATM 38 C C3N NAP . . . R 2 156.863 201.475 203.106 1 63.41 ? C3N NAP 801 F 1 HETATM 39 C C7N NAP . . . R 2 157.608 201.745 204.365 1 63.41 ? C7N NAP 801 F 1 HETATM 40 O O7N NAP . . . R 2 157.11 202.492 205.187 1 63.41 ? O7N NAP 801 F 1 HETATM 41 N N7N NAP . . . R 2 158.786 201.159 204.537 1 63.41 ? N7N NAP 801 F 1 HETATM 42 C C4N NAP . . . R 2 157.563 201.187 201.947 1 63.41 ? C4N NAP 801 F 1 HETATM 43 C C5N NAP . . . R 2 156.877 200.945 200.771 1 63.41 ? C5N NAP 801 F 1 HETATM 44 C C6N NAP . . . R 2 155.422 200.984 200.727 1 63.41 ? C6N NAP 801 F 1 HETATM 45 P P2B NAP . . . R 2 149.107 190.209 198.767 1 63.41 ? P2B NAP 801 F 1 HETATM 46 O O1X NAP . . . R 2 149.593 190.799 197.468 1 63.41 ? O1X NAP 801 F 1 HETATM 47 O O2X NAP . . . R 2 148.793 188.744 198.607 1 63.41 ? O2X NAP 801 F 1 HETATM 48 O O3X NAP . . . R 2 147.886 190.947 199.252 1 63.41 ? O3X NAP 801 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #