data_6JQO # _model_server_result.job_id 5vxUS9q2arzSBxK7JUl97g _model_server_result.datetime_utc '2024-11-22 09:23:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":801}' # _entry.id 6JQO # _exptl.entry_id 6JQO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JQO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 330 n n PA O2A NAP sing 331 n n PA O5B NAP sing 332 n n PA O3 NAP sing 333 n n O2A HOA2 NAP sing 334 n n O5B C5B NAP sing 335 n n C5B C4B NAP sing 336 n n C5B H51A NAP sing 337 n n C5B H52A NAP sing 338 n n C4B O4B NAP sing 339 n n C4B C3B NAP sing 340 n n C4B H4B NAP sing 341 n n O4B C1B NAP sing 342 n n C3B O3B NAP sing 343 n n C3B C2B NAP sing 344 n n C3B H3B NAP sing 345 n n O3B HO3A NAP sing 346 n n C2B O2B NAP sing 347 n n C2B C1B NAP sing 348 n n C2B H2B NAP sing 349 n n O2B P2B NAP sing 350 n n C1B N9A NAP sing 351 n n C1B H1B NAP sing 352 n n N9A C8A NAP sing 353 n y N9A C4A NAP sing 354 n y C8A N7A NAP doub 355 n y C8A H8A NAP sing 356 n n N7A C5A NAP sing 357 n y C5A C6A NAP sing 358 n y C5A C4A NAP doub 359 n y C6A N6A NAP sing 360 n n C6A N1A NAP doub 361 n y N6A H61A NAP sing 362 n n N6A H62A NAP sing 363 n n N1A C2A NAP sing 364 n y C2A N3A NAP doub 365 n y C2A H2A NAP sing 366 n n N3A C4A NAP sing 367 n y O3 PN NAP sing 368 n n PN O1N NAP doub 369 n n PN O2N NAP sing 370 n n PN O5D NAP sing 371 n n O5D C5D NAP sing 372 n n C5D C4D NAP sing 373 n n C5D H51N NAP sing 374 n n C5D H52N NAP sing 375 n n C4D O4D NAP sing 376 n n C4D C3D NAP sing 377 n n C4D H4D NAP sing 378 n n O4D C1D NAP sing 379 n n C3D O3D NAP sing 380 n n C3D C2D NAP sing 381 n n C3D H3D NAP sing 382 n n O3D HO3N NAP sing 383 n n C2D O2D NAP sing 384 n n C2D C1D NAP sing 385 n n C2D H2D NAP sing 386 n n O2D HO2N NAP sing 387 n n C1D N1N NAP sing 388 n n C1D H1D NAP sing 389 n n N1N C2N NAP sing 390 n y N1N C6N NAP doub 391 n y C2N C3N NAP doub 392 n y C2N H2N NAP sing 393 n n C3N C7N NAP sing 394 n n C3N C4N NAP sing 395 n y C7N O7N NAP doub 396 n n C7N N7N NAP sing 397 n n N7N H71N NAP sing 398 n n N7N H72N NAP sing 399 n n C4N C5N NAP doub 400 n y C4N H4N NAP sing 401 n n C5N C6N NAP sing 402 n y C5N H5N NAP sing 403 n n C6N H6N NAP sing 404 n n P2B O1X NAP doub 405 n n P2B O2X NAP sing 406 n n P2B O3X NAP sing 407 n n O2X HOP2 NAP sing 408 n n O3X HOP3 NAP sing 409 n n # _atom_sites.entry_id 6JQO _atom_sites.fract_transf_matrix[1][1] 0.002334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAP A 1 801 801 NAP NAP . H 3 COO A 1 802 802 COO COO . I 2 NAP B 1 801 801 NAP NAP . J 3 COO B 1 802 802 COO COO . K 2 NAP C 1 801 801 NAP NAP . L 3 COO C 1 802 802 COO COO . M 2 NAP D 1 801 801 NAP NAP . N 3 COO D 1 802 802 COO COO . O 2 NAP E 1 801 801 NAP NAP . P 3 COO E 1 802 802 COO COO . Q 2 NAP F 1 801 801 NAP NAP . R 3 COO F 1 802 802 COO COO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . M 2 273.601 168.376 234.774 1 45.6 ? PA NAP 801 D 1 HETATM 2 O O1A NAP . . . M 2 274.819 168.47 233.895 1 45.6 ? O1A NAP 801 D 1 HETATM 3 O O2A NAP . . . M 2 273.957 167.769 236.105 1 45.6 ? O2A NAP 801 D 1 HETATM 4 O O5B NAP . . . M 2 272.516 167.449 234.038 1 45.6 ? O5B NAP 801 D 1 HETATM 5 C C5B NAP . . . M 2 271.136 167.796 234.046 1 45.6 ? C5B NAP 801 D 1 HETATM 6 C C4B NAP . . . M 2 270.291 166.534 234.133 1 45.6 ? C4B NAP 801 D 1 HETATM 7 O O4B NAP . . . M 2 270.7 165.573 233.16 1 45.6 ? O4B NAP 801 D 1 HETATM 8 C C3B NAP . . . M 2 270.44 165.873 235.487 1 45.6 ? C3B NAP 801 D 1 HETATM 9 O O3B NAP . . . M 2 269.146 165.588 236.015 1 45.6 ? O3B NAP 801 D 1 HETATM 10 C C2B NAP . . . M 2 271.166 164.579 235.211 1 45.6 ? C2B NAP 801 D 1 HETATM 11 O O2B NAP . . . M 2 270.708 163.558 236.086 1 45.6 ? O2B NAP 801 D 1 HETATM 12 C C1B NAP . . . M 2 270.786 164.289 233.776 1 45.6 ? C1B NAP 801 D 1 HETATM 13 N N9A NAP . . . M 2 271.804 163.451 233.102 1 45.6 ? N9A NAP 801 D 1 HETATM 14 C C8A NAP . . . M 2 273.138 163.549 233.231 1 45.6 ? C8A NAP 801 D 1 HETATM 15 N N7A NAP . . . M 2 273.77 162.624 232.469 1 45.6 ? N7A NAP 801 D 1 HETATM 16 C C5A NAP . . . M 2 272.823 161.915 231.833 1 45.6 ? C5A NAP 801 D 1 HETATM 17 C C6A NAP . . . M 2 272.794 160.79 230.875 1 45.6 ? C6A NAP 801 D 1 HETATM 18 N N6A NAP . . . M 2 273.941 160.221 230.434 1 45.6 ? N6A NAP 801 D 1 HETATM 19 N N1A NAP . . . M 2 271.587 160.349 230.457 1 45.6 ? N1A NAP 801 D 1 HETATM 20 C C2A NAP . . . M 2 270.441 160.906 230.887 1 45.6 ? C2A NAP 801 D 1 HETATM 21 N N3A NAP . . . M 2 270.394 161.927 231.756 1 45.6 ? N3A NAP 801 D 1 HETATM 22 C C4A NAP . . . M 2 271.531 162.464 232.253 1 45.6 ? C4A NAP 801 D 1 HETATM 23 O O3 NAP . . . M 2 273.02 169.856 234.995 1 45.6 ? O3 NAP 801 D 1 HETATM 24 P PN NAP . . . M 2 272.878 170.456 236.479 1 45.6 ? PN NAP 801 D 1 HETATM 25 O O1N NAP . . . M 2 271.945 169.57 237.261 1 45.6 ? O1N NAP 801 D 1 HETATM 26 O O2N NAP . . . M 2 274.235 170.499 237.132 1 45.6 ? O2N NAP 801 D 1 HETATM 27 O O5D NAP . . . M 2 272.28 171.949 236.436 1 45.6 ? O5D NAP 801 D 1 HETATM 28 C C5D NAP . . . M 2 273.141 173.084 236.497 1 45.6 ? C5D NAP 801 D 1 HETATM 29 C C4D NAP . . . M 2 273.311 173.697 235.116 1 45.6 ? C4D NAP 801 D 1 HETATM 30 O O4D NAP . . . M 2 272.033 173.825 234.493 1 45.6 ? O4D NAP 801 D 1 HETATM 31 C C3D NAP . . . M 2 273.887 175.096 235.199 1 45.6 ? C3D NAP 801 D 1 HETATM 32 O O3D NAP . . . M 2 274.915 175.23 234.218 1 45.6 ? O3D NAP 801 D 1 HETATM 33 C C2D NAP . . . M 2 272.731 176.008 234.856 1 45.6 ? C2D NAP 801 D 1 HETATM 34 O O2D NAP . . . M 2 273.187 177.155 234.14 1 45.6 ? O2D NAP 801 D 1 HETATM 35 C C1D NAP . . . M 2 271.861 175.142 233.974 1 45.6 ? C1D NAP 801 D 1 HETATM 36 N N1N NAP . . . M 2 270.456 175.528 234.053 1 45.6 ? N1N NAP 801 D 1 HETATM 37 C C2N NAP . . . M 2 269.858 176.076 232.991 1 45.6 ? C2N NAP 801 D 1 HETATM 38 C C3N NAP . . . M 2 268.522 176.448 233.03 1 45.6 ? C3N NAP 801 D 1 HETATM 39 C C7N NAP . . . M 2 267.871 177.065 231.833 1 45.6 ? C7N NAP 801 D 1 HETATM 40 O O7N NAP . . . M 2 268.559 177.448 230.905 1 45.6 ? O7N NAP 801 D 1 HETATM 41 N N7N NAP . . . M 2 266.546 177.174 231.817 1 45.6 ? N7N NAP 801 D 1 HETATM 42 C C4N NAP . . . M 2 267.778 176.253 234.179 1 45.6 ? C4N NAP 801 D 1 HETATM 43 C C5N NAP . . . M 2 268.357 175.683 235.299 1 45.6 ? C5N NAP 801 D 1 HETATM 44 C C6N NAP . . . M 2 269.752 175.273 235.308 1 45.6 ? C6N NAP 801 D 1 HETATM 45 P P2B NAP . . . M 2 271.587 163.177 237.375 1 45.6 ? P2B NAP 801 D 1 HETATM 46 O O1X NAP . . . M 2 271.589 164.348 238.322 1 45.6 ? O1X NAP 801 D 1 HETATM 47 O O2X NAP . . . M 2 270.978 161.971 238.04 1 45.6 ? O2X NAP 801 D 1 HETATM 48 O O3X NAP . . . M 2 272.994 162.862 236.938 1 45.6 ? O3X NAP 801 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #