data_6JQO # _model_server_result.job_id ty5egSDjGTacwbPzYfaktw _model_server_result.datetime_utc '2024-11-22 09:43:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":801}' # _entry.id 6JQO # _exptl.entry_id 6JQO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JQO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 330 n n PA O2A NAP sing 331 n n PA O5B NAP sing 332 n n PA O3 NAP sing 333 n n O2A HOA2 NAP sing 334 n n O5B C5B NAP sing 335 n n C5B C4B NAP sing 336 n n C5B H51A NAP sing 337 n n C5B H52A NAP sing 338 n n C4B O4B NAP sing 339 n n C4B C3B NAP sing 340 n n C4B H4B NAP sing 341 n n O4B C1B NAP sing 342 n n C3B O3B NAP sing 343 n n C3B C2B NAP sing 344 n n C3B H3B NAP sing 345 n n O3B HO3A NAP sing 346 n n C2B O2B NAP sing 347 n n C2B C1B NAP sing 348 n n C2B H2B NAP sing 349 n n O2B P2B NAP sing 350 n n C1B N9A NAP sing 351 n n C1B H1B NAP sing 352 n n N9A C8A NAP sing 353 n y N9A C4A NAP sing 354 n y C8A N7A NAP doub 355 n y C8A H8A NAP sing 356 n n N7A C5A NAP sing 357 n y C5A C6A NAP sing 358 n y C5A C4A NAP doub 359 n y C6A N6A NAP sing 360 n n C6A N1A NAP doub 361 n y N6A H61A NAP sing 362 n n N6A H62A NAP sing 363 n n N1A C2A NAP sing 364 n y C2A N3A NAP doub 365 n y C2A H2A NAP sing 366 n n N3A C4A NAP sing 367 n y O3 PN NAP sing 368 n n PN O1N NAP doub 369 n n PN O2N NAP sing 370 n n PN O5D NAP sing 371 n n O5D C5D NAP sing 372 n n C5D C4D NAP sing 373 n n C5D H51N NAP sing 374 n n C5D H52N NAP sing 375 n n C4D O4D NAP sing 376 n n C4D C3D NAP sing 377 n n C4D H4D NAP sing 378 n n O4D C1D NAP sing 379 n n C3D O3D NAP sing 380 n n C3D C2D NAP sing 381 n n C3D H3D NAP sing 382 n n O3D HO3N NAP sing 383 n n C2D O2D NAP sing 384 n n C2D C1D NAP sing 385 n n C2D H2D NAP sing 386 n n O2D HO2N NAP sing 387 n n C1D N1N NAP sing 388 n n C1D H1D NAP sing 389 n n N1N C2N NAP sing 390 n y N1N C6N NAP doub 391 n y C2N C3N NAP doub 392 n y C2N H2N NAP sing 393 n n C3N C7N NAP sing 394 n n C3N C4N NAP sing 395 n y C7N O7N NAP doub 396 n n C7N N7N NAP sing 397 n n N7N H71N NAP sing 398 n n N7N H72N NAP sing 399 n n C4N C5N NAP doub 400 n y C4N H4N NAP sing 401 n n C5N C6N NAP sing 402 n y C5N H5N NAP sing 403 n n C6N H6N NAP sing 404 n n P2B O1X NAP doub 405 n n P2B O2X NAP sing 406 n n P2B O3X NAP sing 407 n n O2X HOP2 NAP sing 408 n n O3X HOP3 NAP sing 409 n n # _atom_sites.entry_id 6JQO _atom_sites.fract_transf_matrix[1][1] 0.002334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAP A 1 801 801 NAP NAP . H 3 COO A 1 802 802 COO COO . I 2 NAP B 1 801 801 NAP NAP . J 3 COO B 1 802 802 COO COO . K 2 NAP C 1 801 801 NAP NAP . L 3 COO C 1 802 802 COO COO . M 2 NAP D 1 801 801 NAP NAP . N 3 COO D 1 802 802 COO COO . O 2 NAP E 1 801 801 NAP NAP . P 3 COO E 1 802 802 COO COO . Q 2 NAP F 1 801 801 NAP NAP . R 3 COO F 1 802 802 COO COO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . Q 2 144.781 185.507 234.668 1 46.5 ? PA NAP 801 F 1 HETATM 2 O O1A NAP . . . Q 2 144.335 184.548 233.597 1 46.5 ? O1A NAP 801 F 1 HETATM 3 O O2A NAP . . . Q 2 144.036 185.254 235.953 1 46.5 ? O2A NAP 801 F 1 HETATM 4 O O5B NAP . . . Q 2 144.49 187.006 234.172 1 46.5 ? O5B NAP 801 F 1 HETATM 5 C C5B NAP . . . Q 2 145.539 187.961 234.065 1 46.5 ? C5B NAP 801 F 1 HETATM 6 C C4B NAP . . . Q 2 144.954 189.368 234.078 1 46.5 ? C4B NAP 801 F 1 HETATM 7 O O4B NAP . . . Q 2 143.884 189.483 233.137 1 46.5 ? O4B NAP 801 F 1 HETATM 8 C C3B NAP . . . Q 2 144.369 189.711 235.433 1 46.5 ? C3B NAP 801 F 1 HETATM 9 O O3B NAP . . . Q 2 144.806 191.013 235.817 1 46.5 ? O3B NAP 801 F 1 HETATM 10 C C2B NAP . . . Q 2 142.874 189.723 235.213 1 46.5 ? C2B NAP 801 F 1 HETATM 11 O O2B NAP . . . Q 2 142.247 190.667 236.071 1 46.5 ? O2B NAP 801 F 1 HETATM 12 C C1B NAP . . . Q 2 142.757 190.107 233.753 1 46.5 ? C1B NAP 801 F 1 HETATM 13 N N9A NAP . . . Q 2 141.502 189.597 233.149 1 46.5 ? N9A NAP 801 F 1 HETATM 14 C C8A NAP . . . Q 2 140.981 188.371 233.321 1 46.5 ? C8A NAP 801 F 1 HETATM 15 N N7A NAP . . . Q 2 139.827 188.228 232.624 1 46.5 ? N7A NAP 801 F 1 HETATM 16 C C5A NAP . . . Q 2 139.598 189.387 231.983 1 46.5 ? C5A NAP 801 F 1 HETATM 17 C C6A NAP . . . Q 2 138.559 189.92 231.074 1 46.5 ? C6A NAP 801 F 1 HETATM 18 N N6A NAP . . . Q 2 137.503 189.16 230.702 1 46.5 ? N6A NAP 801 F 1 HETATM 19 N N1A NAP . . . Q 2 138.701 191.188 230.631 1 46.5 ? N1A NAP 801 F 1 HETATM 20 C C2A NAP . . . Q 2 139.744 191.954 230.992 1 46.5 ? C2A NAP 801 F 1 HETATM 21 N N3A NAP . . . Q 2 140.72 191.535 231.813 1 46.5 ? N3A NAP 801 F 1 HETATM 22 C C4A NAP . . . Q 2 140.705 190.285 232.332 1 46.5 ? C4A NAP 801 F 1 HETATM 23 O O3 NAP . . . Q 2 146.353 185.3 234.919 1 46.5 ? O3 NAP 801 F 1 HETATM 24 P PN NAP . . . Q 2 146.933 185.172 236.412 1 46.5 ? PN NAP 801 F 1 HETATM 25 O O1N NAP . . . Q 2 146.487 186.369 237.208 1 46.5 ? O1N NAP 801 F 1 HETATM 26 O O2N NAP . . . Q 2 146.42 183.903 237.041 1 46.5 ? O2N NAP 801 F 1 HETATM 27 O O5D NAP . . . Q 2 148.541 185.131 236.389 1 46.5 ? O5D NAP 801 F 1 HETATM 28 C C5D NAP . . . Q 2 149.251 183.897 236.482 1 46.5 ? C5D NAP 801 F 1 HETATM 29 C C4D NAP . . . Q 2 149.66 183.399 235.103 1 46.5 ? C4D NAP 801 F 1 HETATM 30 O O4D NAP . . . Q 2 150.393 184.423 234.431 1 46.5 ? O4D NAP 801 F 1 HETATM 31 C C3D NAP . . . Q 2 150.579 182.197 235.193 1 46.5 ? C3D NAP 801 F 1 HETATM 32 O O3D NAP . . . Q 2 150.165 181.231 234.227 1 46.5 ? O3D NAP 801 F 1 HETATM 33 C C2D NAP . . . Q 2 151.944 182.733 234.83 1 46.5 ? C2D NAP 801 F 1 HETATM 34 O O2D NAP . . . Q 2 152.697 181.75 234.121 1 46.5 ? O2D NAP 801 F 1 HETATM 35 C C1D NAP . . . Q 2 151.625 183.907 233.93 1 46.5 ? C1D NAP 801 F 1 HETATM 36 N N1N NAP . . . Q 2 152.658 184.935 233.995 1 46.5 ? N1N NAP 801 F 1 HETATM 37 C C2N NAP . . . Q 2 153.476 185.118 232.956 1 46.5 ? C2N NAP 801 F 1 HETATM 38 C C3N NAP . . . Q 2 154.464 186.089 232.988 1 46.5 ? C3N NAP 801 F 1 HETATM 39 C C7N NAP . . . Q 2 155.374 186.282 231.819 1 46.5 ? C7N NAP 801 F 1 HETATM 40 O O7N NAP . . . Q 2 155.382 185.462 230.92 1 46.5 ? O7N NAP 801 F 1 HETATM 41 N N7N NAP . . . Q 2 156.147 187.362 231.795 1 46.5 ? N7N NAP 801 F 1 HETATM 42 C C4N NAP . . . Q 2 154.626 186.89 234.104 1 46.5 ? C4N NAP 801 F 1 HETATM 43 C C5N NAP . . . Q 2 153.794 186.737 235.198 1 46.5 ? C5N NAP 801 F 1 HETATM 44 C C6N NAP . . . Q 2 152.738 185.738 235.21 1 46.5 ? C6N NAP 801 F 1 HETATM 45 P P2B NAP . . . Q 2 141.399 190.15 237.335 1 46.5 ? P2B NAP 801 F 1 HETATM 46 O O1X NAP . . . Q 2 142.307 189.345 238.23 1 46.5 ? O1X NAP 801 F 1 HETATM 47 O O2X NAP . . . Q 2 140.856 191.341 238.081 1 46.5 ? O2X NAP 801 F 1 HETATM 48 O O3X NAP . . . Q 2 140.26 189.287 236.857 1 46.5 ? O3X NAP 801 F 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 447 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #