data_6JR5 # _model_server_result.job_id 02kfrTjLor3Q3uIWFY8i0Q _model_server_result.datetime_utc '2025-01-11 02:03:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6JR5 # _exptl.entry_id 6JR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.38 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,7S,11E)-7,14,16-trihydroxy-3-methyl-3,4,5,6,7,8,9,10-octahydro-1H-2-benzoxacyclotetradecin-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JR5 _cell.length_a 74.61 _cell.length_b 91.68 _cell.length_c 113.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C18 H24 O5' _chem_comp.formula_weight 320.38 _chem_comp.id ZHB _chem_comp.mon_nstd_flag . _chem_comp.name (3S,7S,11E)-7,14,16-trihydroxy-3-methyl-3,4,5,6,7,8,9,10-octahydro-1H-2-benzoxacyclotetradecin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAD CAS ZHB sing 389 n n OAB CAQ ZHB doub 390 n n CAS CAH ZHB doub 391 n y CAS CAU ZHB sing 392 n y CAH CAR ZHB sing 393 n y CAA CAV ZHB sing 394 n n CAQ CAU ZHB sing 395 n n CAQ OAP ZHB sing 396 n n CAU CAT ZHB doub 397 n y CAR OAC ZHB sing 398 n n CAR CAI ZHB doub 399 n y CAV OAP ZHB sing 400 n n CAV CAM ZHB sing 401 n n CAT CAI ZHB sing 402 n y CAT CAG ZHB sing 403 n n CAM CAL ZHB sing 404 n n CAG CAF ZHB doub 405 e n CAL CAO ZHB sing 406 n n CAF CAJ ZHB sing 407 n n CAO CAW ZHB sing 408 n n CAJ CAK ZHB sing 409 n n CAW CAN ZHB sing 410 n n CAW OAE ZHB sing 411 n n CAN CAK ZHB sing 412 n n CAO H1 ZHB sing 413 n n CAO H2 ZHB sing 414 n n CAL H3 ZHB sing 415 n n CAL H4 ZHB sing 416 n n CAM H5 ZHB sing 417 n n CAM H6 ZHB sing 418 n n CAV H7 ZHB sing 419 n n CAA H8 ZHB sing 420 n n CAA H9 ZHB sing 421 n n CAA H10 ZHB sing 422 n n OAD H11 ZHB sing 423 n n CAH H12 ZHB sing 424 n n OAC H13 ZHB sing 425 n n CAI H14 ZHB sing 426 n n CAG H15 ZHB sing 427 n n CAF H16 ZHB sing 428 n n CAJ H17 ZHB sing 429 n n CAJ H18 ZHB sing 430 n n CAK H19 ZHB sing 431 n n CAK H20 ZHB sing 432 n n CAN H21 ZHB sing 433 n n CAN H22 ZHB sing 434 n n CAW H23 ZHB sing 435 n n OAE H24 ZHB sing 436 n n # _atom_sites.entry_id 6JR5 _atom_sites.fract_transf_matrix[1][1] 0.013403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZHB A 1 301 301 ZHB ZHB . D 3 GOL A 1 302 302 GOL GOL . E 2 ZHB B 1 301 301 ZHB ZHB . F 3 GOL B 1 302 302 GOL GOL . G 4 HOH A 1 401 476 HOH HOH . G 4 HOH A 2 402 452 HOH HOH . G 4 HOH A 3 403 507 HOH HOH . G 4 HOH A 4 404 428 HOH HOH . G 4 HOH A 5 405 486 HOH HOH . G 4 HOH A 6 406 462 HOH HOH . G 4 HOH A 7 407 412 HOH HOH . G 4 HOH A 8 408 422 HOH HOH . G 4 HOH A 9 409 451 HOH HOH . G 4 HOH A 10 410 475 HOH HOH . G 4 HOH A 11 411 446 HOH HOH . G 4 HOH A 12 412 436 HOH HOH . G 4 HOH A 13 413 434 HOH HOH . G 4 HOH A 14 414 463 HOH HOH . G 4 HOH A 15 415 448 HOH HOH . G 4 HOH A 16 416 401 HOH HOH . G 4 HOH A 17 417 427 HOH HOH . G 4 HOH A 18 418 402 HOH HOH . G 4 HOH A 19 419 485 HOH HOH . G 4 HOH A 20 420 484 HOH HOH . G 4 HOH A 21 421 477 HOH HOH . G 4 HOH A 22 422 416 HOH HOH . G 4 HOH A 23 423 497 HOH HOH . G 4 HOH A 24 424 426 HOH HOH . G 4 HOH A 25 425 413 HOH HOH . G 4 HOH A 26 426 465 HOH HOH . G 4 HOH A 27 427 419 HOH HOH . G 4 HOH A 28 428 453 HOH HOH . G 4 HOH A 29 429 441 HOH HOH . G 4 HOH A 30 430 449 HOH HOH . G 4 HOH A 31 431 423 HOH HOH . G 4 HOH A 32 432 510 HOH HOH . G 4 HOH A 33 433 472 HOH HOH . G 4 HOH A 34 434 503 HOH HOH . G 4 HOH A 35 435 435 HOH HOH . G 4 HOH A 36 436 406 HOH HOH . G 4 HOH A 37 437 411 HOH HOH . G 4 HOH A 38 438 456 HOH HOH . G 4 HOH A 39 439 489 HOH HOH . G 4 HOH A 40 440 509 HOH HOH . G 4 HOH A 41 441 408 HOH HOH . G 4 HOH A 42 442 404 HOH HOH . G 4 HOH A 43 443 407 HOH HOH . G 4 HOH A 44 444 460 HOH HOH . G 4 HOH A 45 445 405 HOH HOH . G 4 HOH A 46 446 417 HOH HOH . G 4 HOH A 47 447 470 HOH HOH . G 4 HOH A 48 448 432 HOH HOH . G 4 HOH A 49 449 439 HOH HOH . G 4 HOH A 50 450 410 HOH HOH . G 4 HOH A 51 451 492 HOH HOH . G 4 HOH A 52 452 444 HOH HOH . G 4 HOH A 53 453 430 HOH HOH . G 4 HOH A 54 454 461 HOH HOH . G 4 HOH A 55 455 445 HOH HOH . G 4 HOH A 56 456 504 HOH HOH . G 4 HOH A 57 457 501 HOH HOH . G 4 HOH A 58 458 421 HOH HOH . G 4 HOH A 59 459 447 HOH HOH . G 4 HOH A 60 460 415 HOH HOH . G 4 HOH A 61 461 459 HOH HOH . G 4 HOH A 62 462 455 HOH HOH . G 4 HOH A 63 463 431 HOH HOH . G 4 HOH A 64 464 493 HOH HOH . G 4 HOH A 65 465 466 HOH HOH . G 4 HOH A 66 466 491 HOH HOH . G 4 HOH A 67 467 469 HOH HOH . G 4 HOH A 68 468 458 HOH HOH . G 4 HOH A 69 469 464 HOH HOH . G 4 HOH A 70 470 490 HOH HOH . G 4 HOH A 71 471 433 HOH HOH . G 4 HOH A 72 472 480 HOH HOH . G 4 HOH A 73 473 457 HOH HOH . G 4 HOH A 74 474 442 HOH HOH . G 4 HOH A 75 475 414 HOH HOH . G 4 HOH A 76 476 473 HOH HOH . G 4 HOH A 77 477 450 HOH HOH . G 4 HOH A 78 478 409 HOH HOH . G 4 HOH A 79 479 429 HOH HOH . G 4 HOH A 80 480 474 HOH HOH . G 4 HOH A 81 481 502 HOH HOH . G 4 HOH A 82 482 454 HOH HOH . G 4 HOH A 83 483 443 HOH HOH . G 4 HOH A 84 484 437 HOH HOH . G 4 HOH A 85 485 500 HOH HOH . G 4 HOH A 86 486 481 HOH HOH . G 4 HOH A 87 487 508 HOH HOH . G 4 HOH A 88 488 418 HOH HOH . G 4 HOH A 89 489 440 HOH HOH . G 4 HOH A 90 490 487 HOH HOH . G 4 HOH A 91 491 482 HOH HOH . G 4 HOH A 92 492 438 HOH HOH . G 4 HOH A 93 493 468 HOH HOH . G 4 HOH A 94 494 479 HOH HOH . G 4 HOH A 95 495 420 HOH HOH . G 4 HOH A 96 496 494 HOH HOH . G 4 HOH A 97 497 506 HOH HOH . G 4 HOH A 98 498 403 HOH HOH . G 4 HOH A 99 499 488 HOH HOH . G 4 HOH A 100 500 424 HOH HOH . G 4 HOH A 101 501 496 HOH HOH . G 4 HOH A 102 502 499 HOH HOH . G 4 HOH A 103 503 498 HOH HOH . G 4 HOH A 104 504 505 HOH HOH . G 4 HOH A 105 505 495 HOH HOH . G 4 HOH A 106 506 471 HOH HOH . G 4 HOH A 107 507 467 HOH HOH . G 4 HOH A 108 508 483 HOH HOH . G 4 HOH A 109 509 478 HOH HOH . H 4 HOH B 1 401 419 HOH HOH . H 4 HOH B 2 402 456 HOH HOH . H 4 HOH B 3 403 444 HOH HOH . H 4 HOH B 4 404 402 HOH HOH . H 4 HOH B 5 405 418 HOH HOH . H 4 HOH B 6 406 465 HOH HOH . H 4 HOH B 7 407 437 HOH HOH . H 4 HOH B 8 408 420 HOH HOH . H 4 HOH B 9 409 409 HOH HOH . H 4 HOH B 10 410 436 HOH HOH . H 4 HOH B 11 411 495 HOH HOH . H 4 HOH B 12 412 429 HOH HOH . H 4 HOH B 13 413 505 HOH HOH . H 4 HOH B 14 414 481 HOH HOH . H 4 HOH B 15 415 463 HOH HOH . H 4 HOH B 16 416 425 HOH HOH . H 4 HOH B 17 417 440 HOH HOH . H 4 HOH B 18 418 458 HOH HOH . H 4 HOH B 19 419 422 HOH HOH . H 4 HOH B 20 420 423 HOH HOH . H 4 HOH B 21 421 415 HOH HOH . H 4 HOH B 22 422 430 HOH HOH . H 4 HOH B 23 423 475 HOH HOH . H 4 HOH B 24 424 406 HOH HOH . H 4 HOH B 25 425 501 HOH HOH . H 4 HOH B 26 426 438 HOH HOH . H 4 HOH B 27 427 472 HOH HOH . H 4 HOH B 28 428 431 HOH HOH . H 4 HOH B 29 429 486 HOH HOH . H 4 HOH B 30 430 413 HOH HOH . H 4 HOH B 31 431 468 HOH HOH . H 4 HOH B 32 432 470 HOH HOH . H 4 HOH B 33 433 448 HOH HOH . H 4 HOH B 34 434 433 HOH HOH . H 4 HOH B 35 435 447 HOH HOH . H 4 HOH B 36 436 479 HOH HOH . H 4 HOH B 37 437 480 HOH HOH . H 4 HOH B 38 438 404 HOH HOH . H 4 HOH B 39 439 455 HOH HOH . H 4 HOH B 40 440 442 HOH HOH . H 4 HOH B 41 441 474 HOH HOH . H 4 HOH B 42 442 411 HOH HOH . H 4 HOH B 43 443 466 HOH HOH . H 4 HOH B 44 444 499 HOH HOH . H 4 HOH B 45 445 405 HOH HOH . H 4 HOH B 46 446 451 HOH HOH . H 4 HOH B 47 447 459 HOH HOH . H 4 HOH B 48 448 407 HOH HOH . H 4 HOH B 49 449 435 HOH HOH . H 4 HOH B 50 450 403 HOH HOH . H 4 HOH B 51 451 477 HOH HOH . H 4 HOH B 52 452 401 HOH HOH . H 4 HOH B 53 453 500 HOH HOH . H 4 HOH B 54 454 441 HOH HOH . H 4 HOH B 55 455 428 HOH HOH . H 4 HOH B 56 456 453 HOH HOH . H 4 HOH B 57 457 460 HOH HOH . H 4 HOH B 58 458 452 HOH HOH . H 4 HOH B 59 459 443 HOH HOH . H 4 HOH B 60 460 421 HOH HOH . H 4 HOH B 61 461 416 HOH HOH . H 4 HOH B 62 462 414 HOH HOH . H 4 HOH B 63 463 457 HOH HOH . H 4 HOH B 64 464 473 HOH HOH . H 4 HOH B 65 465 496 HOH HOH . H 4 HOH B 66 466 504 HOH HOH . H 4 HOH B 67 467 424 HOH HOH . H 4 HOH B 68 468 503 HOH HOH . H 4 HOH B 69 469 450 HOH HOH . H 4 HOH B 70 470 462 HOH HOH . H 4 HOH B 71 471 446 HOH HOH . H 4 HOH B 72 472 461 HOH HOH . H 4 HOH B 73 473 498 HOH HOH . H 4 HOH B 74 474 487 HOH HOH . H 4 HOH B 75 475 445 HOH HOH . H 4 HOH B 76 476 408 HOH HOH . H 4 HOH B 77 477 454 HOH HOH . H 4 HOH B 78 478 490 HOH HOH . H 4 HOH B 79 479 502 HOH HOH . H 4 HOH B 80 480 492 HOH HOH . H 4 HOH B 81 481 417 HOH HOH . H 4 HOH B 82 482 469 HOH HOH . H 4 HOH B 83 483 493 HOH HOH . H 4 HOH B 84 484 494 HOH HOH . H 4 HOH B 85 485 449 HOH HOH . H 4 HOH B 86 486 478 HOH HOH . H 4 HOH B 87 487 427 HOH HOH . H 4 HOH B 88 488 471 HOH HOH . H 4 HOH B 89 489 412 HOH HOH . H 4 HOH B 90 490 476 HOH HOH . H 4 HOH B 91 491 410 HOH HOH . H 4 HOH B 92 492 484 HOH HOH . H 4 HOH B 93 493 439 HOH HOH . H 4 HOH B 94 494 489 HOH HOH . H 4 HOH B 95 495 483 HOH HOH . H 4 HOH B 96 496 426 HOH HOH . H 4 HOH B 97 497 432 HOH HOH . H 4 HOH B 98 498 464 HOH HOH . H 4 HOH B 99 499 485 HOH HOH . H 4 HOH B 100 500 488 HOH HOH . H 4 HOH B 101 501 497 HOH HOH . H 4 HOH B 102 502 434 HOH HOH . H 4 HOH B 103 503 482 HOH HOH . H 4 HOH B 104 504 467 HOH HOH . H 4 HOH B 105 505 425 HOH HOH . H 4 HOH B 106 506 491 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAO ZHB . . . C 2 -24.533 3.316 -1.814 1 66.29 ? CAO ZHB 301 A 1 HETATM 2 C CAL ZHB . . . C 2 -24.065 3.113 -0.375 1 60.07 ? CAL ZHB 301 A 1 HETATM 3 C CAM ZHB . . . C 2 -25.068 2.193 0.268 1 58.43 ? CAM ZHB 301 A 1 HETATM 4 C CAV ZHB . . . C 2 -25.132 2.576 1.741 1 52.65 ? CAV ZHB 301 A 1 HETATM 5 C CAA ZHB . . . C 2 -25.414 1.267 2.46 1 46.67 ? CAA ZHB 301 A 1 HETATM 6 O OAP ZHB . . . C 2 -26.226 3.513 1.858 1 51.5 ? OAP ZHB 301 A 1 HETATM 7 C CAQ ZHB . . . C 2 -26.767 3.977 3.035 1 51.65 ? CAQ ZHB 301 A 1 HETATM 8 O OAB ZHB . . . C 2 -26.354 3.633 4.156 1 47.26 ? OAB ZHB 301 A 1 HETATM 9 C CAU ZHB . . . C 2 -27.953 4.884 2.893 1 43.96 ? CAU ZHB 301 A 1 HETATM 10 C CAS ZHB . . . C 2 -28.91 4.765 3.893 1 40.78 ? CAS ZHB 301 A 1 HETATM 11 O OAD ZHB . . . C 2 -28.699 3.883 4.897 1 38.88 ? OAD ZHB 301 A 1 HETATM 12 C CAH ZHB . . . C 2 -30.067 5.518 3.871 1 45.1 ? CAH ZHB 301 A 1 HETATM 13 C CAR ZHB . . . C 2 -30.274 6.407 2.854 1 41.29 ? CAR ZHB 301 A 1 HETATM 14 O OAC ZHB . . . C 2 -31.382 7.15 2.833 1 47.4 ? OAC ZHB 301 A 1 HETATM 15 C CAI ZHB . . . C 2 -29.348 6.564 1.847 1 43.61 ? CAI ZHB 301 A 1 HETATM 16 C CAT ZHB . . . C 2 -28.161 5.817 1.824 1 46.63 ? CAT ZHB 301 A 1 HETATM 17 C CAG ZHB . . . C 2 -27.181 6.062 0.703 1 50.15 ? CAG ZHB 301 A 1 HETATM 18 C CAF ZHB . . . C 2 -27.377 6.976 -0.26 1 55.58 ? CAF ZHB 301 A 1 HETATM 19 C CAJ ZHB . . . C 2 -26.397 7.264 -1.388 1 57.65 ? CAJ ZHB 301 A 1 HETATM 20 C CAK ZHB . . . C 2 -26.73 6.454 -2.653 1 62.75 ? CAK ZHB 301 A 1 HETATM 21 C CAN ZHB . . . C 2 -26.363 4.957 -2.58 1 65.74 ? CAN ZHB 301 A 1 HETATM 22 C CAW ZHB . . . C 2 -24.912 4.79 -2.052 1 71.63 ? CAW ZHB 301 A 1 HETATM 23 O OAE ZHB . . . C 2 -23.951 5.368 -2.959 1 73.68 ? OAE ZHB 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #