data_6JRR
#
_model_server_result.job_id            VR4-eVl4VRjgZr4qzbHOuQ 
_model_server_result.datetime_utc      '2024-11-04 20:37:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jrr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":6002}' 
#
_entry.id    6JRR 
#
_exptl.entry_id    6JRR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JRR 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JRR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 O N N 
? 5 S N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 3849 A GLU 3849 1_555 J CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc2 A OE2 GLU 3849 A GLU 3849 1_555 J CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc3 A OE1 GLU 3923 A GLU 3923 1_555 J CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc4 A OE2 GLU 3923 A GLU 3923 1_555 J CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc5 A SG CYS 4889 A CYS 4889 1_555 I ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc6 A SG CYS 4892 A CYS 4892 1_555 I ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc7 A NE2 HIS 4909 A HIS 4909 1_555 I ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc8 A NE2 HIS 4914 A HIS 4914 1_555 I ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc9 A O THR 4932 A THR 4932 1_555 J CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc10 C OE1 GLU 3849 C GLU 3849 1_555 N CA CA . C CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc11 C OE2 GLU 3849 C GLU 3849 1_555 N CA CA . C CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc12 C OE1 GLU 3923 C GLU 3923 1_555 N CA CA . C CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc13 C OE2 GLU 3923 C GLU 3923 1_555 N CA CA . C CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc14 C SG CYS 4889 C CYS 4889 1_555 M ZN ZN . C ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc15 C SG CYS 4892 C CYS 4892 1_555 M ZN ZN . C ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc16 C NE2 HIS 4909 C HIS 4909 1_555 M ZN ZN . C ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc17 C NE2 HIS 4914 C HIS 4914 1_555 M ZN ZN . C ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc18 C O THR 4932 C THR 4932 1_555 N CA CA . C CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc19 E OE1 GLU 3849 E GLU 3849 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc20 E OE2 GLU 3849 E GLU 3849 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc21 E OE1 GLU 3923 E GLU 3923 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc22 E OE2 GLU 3923 E GLU 3923 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc23 E SG CYS 4889 E CYS 4889 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc24 E SG CYS 4892 E CYS 4892 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc25 E NE2 HIS 4909 E HIS 4909 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc26 E NE2 HIS 4914 E HIS 4914 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc27 E O THR 4932 E THR 4932 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc28 G OE1 GLU 3849 G GLU 3849 1_555 V CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc29 G OE2 GLU 3849 G GLU 3849 1_555 V CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc30 G OE1 GLU 3923 G GLU 3923 1_555 V CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc31 G OE2 GLU 3923 G GLU 3923 1_555 V CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc32 G SG CYS 4889 G CYS 4889 1_555 U ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc33 G SG CYS 4892 G CYS 4892 1_555 U ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc34 G NE2 HIS 4909 G HIS 4909 1_555 U ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc35 G NE2 HIS 4914 G HIS 4914 1_555 U ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc36 G O THR 4932 G THR 4932 1_555 V CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6JRR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ZN A 1 6000 6000 ZN ZN . 
J 4 CA A 1 6001 6001 CA CA . 
K 5 ATP A 1 6002 6002 ATP ATP . 
L 6 CFF A 1 6003 6003 CFF CFF . 
M 3 ZN C 1 6000 6000 ZN ZN . 
N 4 CA C 1 6001 6001 CA CA . 
O 5 ATP C 1 6002 6002 ATP ATP . 
P 6 CFF C 1 6003 6003 CFF CFF . 
Q 3 ZN E 1 6000 6000 ZN ZN . 
R 4 CA E 1 6001 6001 CA CA . 
S 5 ATP E 1 6002 6002 ATP ATP . 
T 6 CFF E 1 6003 6003 CFF CFF . 
U 3 ZN G 1 6000 6000 ZN ZN . 
V 4 CA G 1 6001 6001 CA CA . 
W 5 ATP G 1 6002 6002 ATP ATP . 
X 6 CFF G 1 6003 6003 CFF CFF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . K 5 235.334 240.859 159.772 1 52.94 ? PG ATP 6002 A 1 
HETATM 2 O O1G ATP . . . K 5 234.007 241.197 159.155 1 52.94 ? O1G ATP 6002 A 1 
HETATM 3 O O2G ATP . . . K 5 236.496 241.119 158.85 1 52.94 ? O2G ATP 6002 A 1 
HETATM 4 O O3G ATP . . . K 5 235.367 239.521 160.458 1 52.94 ? O3G ATP 6002 A 1 
HETATM 5 P PB ATP . . . K 5 234.443 242.236 162.08 1 52.94 ? PB ATP 6002 A 1 
HETATM 6 O O1B ATP . . . K 5 233.146 242.622 161.423 1 52.94 ? O1B ATP 6002 A 1 
HETATM 7 O O2B ATP . . . K 5 235.034 243.177 163.092 1 52.94 ? O2B ATP 6002 A 1 
HETATM 8 O O3B ATP . . . K 5 235.558 241.91 160.97 1 52.94 ? O3B ATP 6002 A 1 
HETATM 9 P PA ATP . . . K 5 232.832 240.154 162.707 1 52.94 ? PA ATP 6002 A 1 
HETATM 10 O O1A ATP . . . K 5 231.872 241.072 163.413 1 52.94 ? O1A ATP 6002 A 1 
HETATM 11 O O2A ATP . . . K 5 232.613 239.761 161.272 1 52.94 ? O2A ATP 6002 A 1 
HETATM 12 O O3A ATP . . . K 5 234.275 240.823 162.802 1 52.94 ? O3A ATP 6002 A 1 
HETATM 13 O O5' ATP . . . K 5 232.963 238.842 163.608 1 52.94 ? O5' ATP 6002 A 1 
HETATM 14 C C5' ATP . . . K 5 232.984 239.031 165.009 1 52.94 ? C5' ATP 6002 A 1 
HETATM 15 C C4' ATP . . . K 5 231.66 238.535 165.533 1 52.94 ? C4' ATP 6002 A 1 
HETATM 16 O O4' ATP . . . K 5 231.828 237.232 166.047 1 52.94 ? O4' ATP 6002 A 1 
HETATM 17 C C3' ATP . . . K 5 231.192 239.389 166.679 1 52.94 ? C3' ATP 6002 A 1 
HETATM 18 O O3' ATP . . . K 5 230.206 240.303 166.226 1 52.94 ? O3' ATP 6002 A 1 
HETATM 19 C C2' ATP . . . K 5 230.557 238.431 167.642 1 52.94 ? C2' ATP 6002 A 1 
HETATM 20 O O2' ATP . . . K 5 229.145 238.541 167.547 1 52.94 ? O2' ATP 6002 A 1 
HETATM 21 C C1' ATP . . . K 5 230.991 237.067 167.176 1 52.94 ? C1' ATP 6002 A 1 
HETATM 22 N N9 ATP . . . K 5 231.796 236.478 168.247 1 52.94 ? N9 ATP 6002 A 1 
HETATM 23 C C8 ATP . . . K 5 231.447 235.439 169.002 1 52.94 ? C8 ATP 6002 A 1 
HETATM 24 N N7 ATP . . . K 5 232.388 235.124 169.909 1 52.94 ? N7 ATP 6002 A 1 
HETATM 25 C C5 ATP . . . K 5 233.35 236 169.722 1 52.94 ? C5 ATP 6002 A 1 
HETATM 26 C C6 ATP . . . K 5 234.611 236.227 170.353 1 52.94 ? C6 ATP 6002 A 1 
HETATM 27 N N6 ATP . . . K 5 234.953 235.408 171.35 1 52.94 ? N6 ATP 6002 A 1 
HETATM 28 N N1 ATP . . . K 5 235.365 237.234 169.912 1 52.94 ? N1 ATP 6002 A 1 
HETATM 29 C C2 ATP . . . K 5 234.97 238.029 168.918 1 52.94 ? C2 ATP 6002 A 1 
HETATM 30 N N3 ATP . . . K 5 233.817 237.875 168.286 1 52.94 ? N3 ATP 6002 A 1 
HETATM 31 C C4 ATP . . . K 5 232.979 236.892 168.643 1 52.94 ? C4 ATP 6002 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    193 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#