data_6JRX # _model_server_result.job_id -IZTXVAHFLxo9DlWmxk18g _model_server_result.datetime_utc '2024-12-27 02:16:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6JRX # _exptl.entry_id 6JRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 617.184 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{trans-4-[3-(2-chlorophenyl)-7-{[3-methyl-4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]cyclohexyl}propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JRX _cell.length_a 144.824 _cell.length_b 144.824 _cell.length_c 144.824 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H41 Cl N8 O2' _chem_comp.formula_weight 617.184 _chem_comp.id 9JO _chem_comp.mon_nstd_flag . _chem_comp.name N-{trans-4-[3-(2-chlorophenyl)-7-{[3-methyl-4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]cyclohexyl}propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAI 9JO doub 1 n y CAG CAH 9JO sing 2 n y CAI CBF 9JO sing 3 n y CAH CAJ 9JO doub 4 n y CBF CL1 9JO sing 5 n n CBF CBK 9JO doub 6 n y CAJ CBK 9JO sing 7 n y CBK NBQ 9JO sing 8 n n NBQ CAX 9JO sing 9 n n NBQ CBD 9JO sing 10 n n OAE CBD 9JO doub 11 n n CAX C5 9JO sing 12 n n CBD NBR 9JO sing 13 n n CAA CAO 9JO sing 14 n n CAO CBC 9JO sing 15 n n C5 C6 9JO doub 16 n y C5 C4 9JO sing 17 n y NBR C4 9JO sing 18 n n NBR CBN 9JO sing 19 n n CAS CBN 9JO sing 20 n n CAS CAQ 9JO sing 21 n n C6 N1 9JO sing 22 n y C4 N3 9JO doub 23 n y CBN CAR 9JO sing 24 n n CBC OAD 9JO doub 25 n n CBC NBB 9JO sing 26 n n CAR CAP 9JO sing 27 n n CBM CAQ 9JO sing 28 n n CBM NBB 9JO sing 29 n n CBM CAP 9JO sing 30 n n N1 C2 9JO doub 31 n y N3 C2 9JO sing 32 n y C2 NBA 9JO sing 33 n n NBA CBG 9JO sing 34 n n CAK CBG 9JO doub 35 n y CAK CAL 9JO sing 36 n y CBG CAN 9JO sing 37 n y CAL CBJ 9JO doub 38 n y CAN CBE 9JO doub 39 n y CBJ CBE 9JO sing 40 n y CBJ NBP 9JO sing 41 n n CBE CAB 9JO sing 42 n n CAV NBP 9JO sing 43 n n CAV CAT 9JO sing 44 n n NBP CAW 9JO sing 45 n n CAT NBO 9JO sing 46 n n CAW CAU 9JO sing 47 n n CAU NBO 9JO sing 48 n n NBO CAC 9JO sing 49 n n C6 H1 9JO sing 50 n n CAA H2 9JO sing 51 n n CAA H3 9JO sing 52 n n CAA H4 9JO sing 53 n n CAB H5 9JO sing 54 n n CAB H6 9JO sing 55 n n CAB H7 9JO sing 56 n n CAC H8 9JO sing 57 n n CAC H9 9JO sing 58 n n CAC H10 9JO sing 59 n n CAG H11 9JO sing 60 n n CAH H12 9JO sing 61 n n CAI H13 9JO sing 62 n n CAJ H14 9JO sing 63 n n CAK H15 9JO sing 64 n n CAL H16 9JO sing 65 n n CAN H17 9JO sing 66 n n CAO H18 9JO sing 67 n n CAO H19 9JO sing 68 n n CAP H20 9JO sing 69 n n CAP H21 9JO sing 70 n n CAQ H22 9JO sing 71 n n CAQ H23 9JO sing 72 n n CAR H24 9JO sing 73 n n CAR H25 9JO sing 74 n n CAS H26 9JO sing 75 n n CAS H27 9JO sing 76 n n CAT H28 9JO sing 77 n n CAT H29 9JO sing 78 n n CAU H30 9JO sing 79 n n CAU H31 9JO sing 80 n n CAV H32 9JO sing 81 n n CAV H33 9JO sing 82 n n CAW H34 9JO sing 83 n n CAW H35 9JO sing 84 n n CAX H36 9JO sing 85 n n CAX H37 9JO sing 86 n n CBM H38 9JO sing 87 n n CBN H39 9JO sing 88 n n NBA H40 9JO sing 89 n n NBB H41 9JO sing 90 n n # _atom_sites.entry_id 6JRX _atom_sites.fract_transf_matrix[1][1] 0.006905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9JO A 1 1101 1 9JO LIG . C 3 HOH A 1 1201 38 HOH HOH . C 3 HOH A 2 1202 74 HOH HOH . C 3 HOH A 3 1203 13 HOH HOH . C 3 HOH A 4 1204 49 HOH HOH . C 3 HOH A 5 1205 28 HOH HOH . C 3 HOH A 6 1206 41 HOH HOH . C 3 HOH A 7 1207 36 HOH HOH . C 3 HOH A 8 1208 35 HOH HOH . C 3 HOH A 9 1209 61 HOH HOH . C 3 HOH A 10 1210 31 HOH HOH . C 3 HOH A 11 1211 16 HOH HOH . C 3 HOH A 12 1212 66 HOH HOH . C 3 HOH A 13 1213 29 HOH HOH . C 3 HOH A 14 1214 6 HOH HOH . C 3 HOH A 15 1215 44 HOH HOH . C 3 HOH A 16 1216 60 HOH HOH . C 3 HOH A 17 1217 69 HOH HOH . C 3 HOH A 18 1218 43 HOH HOH . C 3 HOH A 19 1219 54 HOH HOH . C 3 HOH A 20 1220 5 HOH HOH . C 3 HOH A 21 1221 23 HOH HOH . C 3 HOH A 22 1222 12 HOH HOH . C 3 HOH A 23 1223 68 HOH HOH . C 3 HOH A 24 1224 32 HOH HOH . C 3 HOH A 25 1225 59 HOH HOH . C 3 HOH A 26 1226 22 HOH HOH . C 3 HOH A 27 1227 33 HOH HOH . C 3 HOH A 28 1228 70 HOH HOH . C 3 HOH A 29 1229 1 HOH HOH . C 3 HOH A 30 1230 56 HOH HOH . C 3 HOH A 31 1231 20 HOH HOH . C 3 HOH A 32 1232 4 HOH HOH . C 3 HOH A 33 1233 73 HOH HOH . C 3 HOH A 34 1234 46 HOH HOH . C 3 HOH A 35 1235 58 HOH HOH . C 3 HOH A 36 1236 72 HOH HOH . C 3 HOH A 37 1237 57 HOH HOH . C 3 HOH A 38 1238 42 HOH HOH . C 3 HOH A 39 1239 3 HOH HOH . C 3 HOH A 40 1240 37 HOH HOH . C 3 HOH A 41 1241 21 HOH HOH . C 3 HOH A 42 1242 50 HOH HOH . C 3 HOH A 43 1243 45 HOH HOH . C 3 HOH A 44 1244 9 HOH HOH . C 3 HOH A 45 1245 52 HOH HOH . C 3 HOH A 46 1246 67 HOH HOH . C 3 HOH A 47 1247 65 HOH HOH . C 3 HOH A 48 1248 7 HOH HOH . C 3 HOH A 49 1249 51 HOH HOH . C 3 HOH A 50 1250 27 HOH HOH . C 3 HOH A 51 1251 11 HOH HOH . C 3 HOH A 52 1252 26 HOH HOH . C 3 HOH A 53 1253 53 HOH HOH . C 3 HOH A 54 1254 2 HOH HOH . C 3 HOH A 55 1255 14 HOH HOH . C 3 HOH A 56 1256 40 HOH HOH . C 3 HOH A 57 1257 55 HOH HOH . C 3 HOH A 58 1258 62 HOH HOH . C 3 HOH A 59 1259 10 HOH HOH . C 3 HOH A 60 1260 34 HOH HOH . C 3 HOH A 61 1261 30 HOH HOH . C 3 HOH A 62 1262 63 HOH HOH . C 3 HOH A 63 1263 47 HOH HOH . C 3 HOH A 64 1264 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9JO . . . B 2 0.986 51.751 -22.618 1 42.97 ? C4 9JO 1101 A 1 HETATM 2 C C5 9JO . . . B 2 1.567 52.733 -23.342 1 42.02 ? C5 9JO 1101 A 1 HETATM 3 C C6 9JO . . . B 2 2.275 53.809 -22.649 1 40.9 ? C6 9JO 1101 A 1 HETATM 4 N N1 9JO . . . B 2 2.29 53.738 -21.321 1 41.35 ? N1 9JO 1101 A 1 HETATM 5 N N3 9JO . . . B 2 1.034 51.751 -21.266 1 43.82 ? N3 9JO 1101 A 1 HETATM 6 C C2 9JO . . . B 2 1.687 52.758 -20.661 1 40.29 ? C2 9JO 1101 A 1 HETATM 7 C CAA 9JO . . . B 2 -0.847 43.503 -23.829 1 69.74 ? CAA 9JO 1101 A 1 HETATM 8 C CAB 9JO . . . B 2 1.698 51.198 -14.477 1 57.22 ? CAB 9JO 1101 A 1 HETATM 9 C CAC 9JO . . . B 2 -1.255 46.084 -12.584 1 75.13 ? CAC 9JO 1101 A 1 HETATM 10 C CAG 9JO . . . B 2 0.479 51.32 -29.681 1 54.57 ? CAG 9JO 1101 A 1 HETATM 11 C CAH 9JO . . . B 2 -0.673 51.645 -28.901 1 57.68 ? CAH 9JO 1101 A 1 HETATM 12 C CAI 9JO . . . B 2 1.744 51.08 -29.054 1 53.8 ? CAI 9JO 1101 A 1 HETATM 13 C CAJ 9JO . . . B 2 -0.577 51.741 -27.529 1 51.31 ? CAJ 9JO 1101 A 1 HETATM 14 C CAK 9JO . . . B 2 0.515 50.573 -18.632 1 47.34 ? CAK 9JO 1101 A 1 HETATM 15 C CAL 9JO . . . B 2 0.121 49.66 -17.662 1 52.36 ? CAL 9JO 1101 A 1 HETATM 16 C CAN 9JO . . . B 2 1.659 51.884 -16.93 1 45.76 ? CAN 9JO 1101 A 1 HETATM 17 C CAO 9JO . . . B 2 -2.167 44.221 -23.828 1 59.88 ? CAO 9JO 1101 A 1 HETATM 18 C CAP 9JO . . . B 2 -0.795 47.552 -21.172 1 48.98 ? CAP 9JO 1101 A 1 HETATM 19 C CAQ 9JO . . . B 2 -2.845 48.817 -22.061 1 50.03 ? CAQ 9JO 1101 A 1 HETATM 20 C CAR 9JO . . . B 2 0.133 48.224 -22.19 1 49.57 ? CAR 9JO 1101 A 1 HETATM 21 C CAS 9JO . . . B 2 -1.841 49.72 -22.799 1 49.66 ? CAS 9JO 1101 A 1 HETATM 22 C CAT 9JO . . . B 2 -1.704 47.652 -14.07 1 66.82 ? CAT 9JO 1101 A 1 HETATM 23 C CAU 9JO . . . B 2 0.456 47.151 -13.472 1 63.24 ? CAU 9JO 1101 A 1 HETATM 24 C CAV 9JO . . . B 2 -1.213 48.22 -15.435 1 64.28 ? CAV 9JO 1101 A 1 HETATM 25 C CAW 9JO . . . B 2 1.005 47.815 -14.78 1 59.64 ? CAW 9JO 1101 A 1 HETATM 26 C CAX 9JO . . . B 2 1.514 52.718 -24.896 1 45.3 ? CAX 9JO 1101 A 1 HETATM 27 C CBC 9JO . . . B 2 -2.185 45.18 -22.622 1 58.41 ? CBC 9JO 1101 A 1 HETATM 28 C CBD 9JO . . . B 2 0.196 50.573 -24.723 1 47.09 ? CBD 9JO 1101 A 1 HETATM 29 C CBE 9JO . . . B 2 1.27 50.969 -15.97 1 49.3 ? CBE 9JO 1101 A 1 HETATM 30 C CBF 9JO . . . B 2 1.842 51.173 -27.686 1 52.07 ? CBF 9JO 1101 A 1 HETATM 31 C CBG 9JO . . . B 2 1.299 51.693 -18.242 1 42.92 ? CBG 9JO 1101 A 1 HETATM 32 C CBJ 9JO . . . B 2 0.505 49.851 -16.345 1 55.09 ? CBJ 9JO 1101 A 1 HETATM 33 C CBK 9JO . . . B 2 0.697 51.512 -26.935 1 52.3 ? CBK 9JO 1101 A 1 HETATM 34 C CBM 9JO . . . B 2 -2.245 47.469 -21.655 1 53.81 ? CBM 9JO 1101 A 1 HETATM 35 C CBN 9JO . . . B 2 -0.392 49.655 -22.325 1 46.46 ? CBN 9JO 1101 A 1 HETATM 36 N NBA 9JO . . . B 2 1.771 52.788 -19.212 1 39.79 ? NBA 9JO 1101 A 1 HETATM 37 N NBB 9JO . . . B 2 -2.263 46.636 -22.84 1 59.5 ? NBB 9JO 1101 A 1 HETATM 38 N NBO 9JO . . . B 2 -0.809 46.675 -13.648 1 70.17 ? NBO 9JO 1101 A 1 HETATM 39 N NBP 9JO . . . B 2 0.08 48.839 -15.29 1 55.52 ? NBP 9JO 1101 A 1 HETATM 40 N NBQ 9JO . . . B 2 0.815 51.61 -25.495 1 47.42 ? NBQ 9JO 1101 A 1 HETATM 41 N NBR 9JO . . . B 2 0.281 50.616 -23.243 1 48.97 ? NBR 9JO 1101 A 1 HETATM 42 O OAD 9JO . . . B 2 -2.116 44.763 -21.525 1 62.6 ? OAD 9JO 1101 A 1 HETATM 43 O OAE 9JO . . . B 2 -0.352 49.717 -25.288 1 51.1 ? OAE 9JO 1101 A 1 HETATM 44 CL CL1 9JO . . . B 2 3.429 50.912 -26.83 1 60.29 ? CL1 9JO 1101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #