data_6JSG # _model_server_result.job_id XokFnCywctKvKiepWzuihg _model_server_result.datetime_utc '2024-11-06 18:38:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jsg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6JSG # _exptl.entry_id 6JSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JSG _cell.length_a 101.972 _cell.length_b 101.972 _cell.length_c 169.792 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 179 1_555 A SG CYS 382 A CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 240 A CYS 241 1_555 A SG CYS 405 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 292 A CYS 293 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JSG _atom_sites.fract_transf_matrix[1][1] 0.009807 _atom_sites.fract_transf_matrix[1][2] 0.005662 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 501 501 IOD IOD . C 2 IOD A 1 502 502 IOD IOD . D 2 IOD A 1 503 503 IOD IOD . E 3 NA A 1 504 504 NA NA . F 4 GOL A 1 505 505 GOL GOL . G 4 GOL A 1 506 506 GOL GOL . H 5 C6U A 1 507 701 C6U MOL . I 6 HOH A 1 601 1058 HOH HOH . I 6 HOH A 2 602 1001 HOH HOH . I 6 HOH A 3 603 1120 HOH HOH . I 6 HOH A 4 604 1019 HOH HOH . I 6 HOH A 5 605 1075 HOH HOH . I 6 HOH A 6 606 1070 HOH HOH . I 6 HOH A 7 607 1011 HOH HOH . I 6 HOH A 8 608 1059 HOH HOH . I 6 HOH A 9 609 1076 HOH HOH . I 6 HOH A 10 610 1143 HOH HOH . I 6 HOH A 11 611 1003 HOH HOH . I 6 HOH A 12 612 1022 HOH HOH . I 6 HOH A 13 613 1009 HOH HOH . I 6 HOH A 14 614 1057 HOH HOH . I 6 HOH A 15 615 1004 HOH HOH . I 6 HOH A 16 616 1149 HOH HOH . I 6 HOH A 17 617 1048 HOH HOH . I 6 HOH A 18 618 1137 HOH HOH . I 6 HOH A 19 619 1067 HOH HOH . I 6 HOH A 20 620 1154 HOH HOH . I 6 HOH A 21 621 1035 HOH HOH . I 6 HOH A 22 622 1183 HOH HOH . I 6 HOH A 23 623 1083 HOH HOH . I 6 HOH A 24 624 1071 HOH HOH . I 6 HOH A 25 625 1043 HOH HOH . I 6 HOH A 26 626 1108 HOH HOH . I 6 HOH A 27 627 1014 HOH HOH . I 6 HOH A 28 628 1027 HOH HOH . I 6 HOH A 29 629 1174 HOH HOH . I 6 HOH A 30 630 1121 HOH HOH . I 6 HOH A 31 631 1097 HOH HOH . I 6 HOH A 32 632 1107 HOH HOH . I 6 HOH A 33 633 1077 HOH HOH . I 6 HOH A 34 634 1034 HOH HOH . I 6 HOH A 35 635 1104 HOH HOH . I 6 HOH A 36 636 1062 HOH HOH . I 6 HOH A 37 637 1156 HOH HOH . I 6 HOH A 38 638 1049 HOH HOH . I 6 HOH A 39 639 1012 HOH HOH . I 6 HOH A 40 640 1146 HOH HOH . I 6 HOH A 41 641 1042 HOH HOH . I 6 HOH A 42 642 1013 HOH HOH . I 6 HOH A 43 643 1079 HOH HOH . I 6 HOH A 44 644 1029 HOH HOH . I 6 HOH A 45 645 1017 HOH HOH . I 6 HOH A 46 646 1082 HOH HOH . I 6 HOH A 47 647 1135 HOH HOH . I 6 HOH A 48 648 1025 HOH HOH . I 6 HOH A 49 649 1026 HOH HOH . I 6 HOH A 50 650 1015 HOH HOH . I 6 HOH A 51 651 1102 HOH HOH . I 6 HOH A 52 652 1164 HOH HOH . I 6 HOH A 53 653 1119 HOH HOH . I 6 HOH A 54 654 1160 HOH HOH . I 6 HOH A 55 655 1044 HOH HOH . I 6 HOH A 56 656 1045 HOH HOH . I 6 HOH A 57 657 1063 HOH HOH . I 6 HOH A 58 658 1005 HOH HOH . I 6 HOH A 59 659 1086 HOH HOH . I 6 HOH A 60 660 1094 HOH HOH . I 6 HOH A 61 661 1098 HOH HOH . I 6 HOH A 62 662 1159 HOH HOH . I 6 HOH A 63 663 1152 HOH HOH . I 6 HOH A 64 664 1036 HOH HOH . I 6 HOH A 65 665 1122 HOH HOH . I 6 HOH A 66 666 1088 HOH HOH . I 6 HOH A 67 667 1091 HOH HOH . I 6 HOH A 68 668 1032 HOH HOH . I 6 HOH A 69 669 1080 HOH HOH . I 6 HOH A 70 670 1020 HOH HOH . I 6 HOH A 71 671 1010 HOH HOH . I 6 HOH A 72 672 1140 HOH HOH . I 6 HOH A 73 673 1030 HOH HOH . I 6 HOH A 74 674 1041 HOH HOH . I 6 HOH A 75 675 1153 HOH HOH . I 6 HOH A 76 676 1021 HOH HOH . I 6 HOH A 77 677 1072 HOH HOH . I 6 HOH A 78 678 1007 HOH HOH . I 6 HOH A 79 679 1038 HOH HOH . I 6 HOH A 80 680 1131 HOH HOH . I 6 HOH A 81 681 1037 HOH HOH . I 6 HOH A 82 682 1060 HOH HOH . I 6 HOH A 83 683 1129 HOH HOH . I 6 HOH A 84 684 1006 HOH HOH . I 6 HOH A 85 685 1167 HOH HOH . I 6 HOH A 86 686 1053 HOH HOH . I 6 HOH A 87 687 1100 HOH HOH . I 6 HOH A 88 688 1163 HOH HOH . I 6 HOH A 89 689 1123 HOH HOH . I 6 HOH A 90 690 1093 HOH HOH . I 6 HOH A 91 691 1028 HOH HOH . I 6 HOH A 92 692 1087 HOH HOH . I 6 HOH A 93 693 1031 HOH HOH . I 6 HOH A 94 694 1008 HOH HOH . I 6 HOH A 95 695 1065 HOH HOH . I 6 HOH A 96 696 1040 HOH HOH . I 6 HOH A 97 697 1125 HOH HOH . I 6 HOH A 98 698 1138 HOH HOH . I 6 HOH A 99 699 1018 HOH HOH . I 6 HOH A 100 700 1136 HOH HOH . I 6 HOH A 101 701 1184 HOH HOH . I 6 HOH A 102 702 1180 HOH HOH . I 6 HOH A 103 703 1024 HOH HOH . I 6 HOH A 104 704 1073 HOH HOH . I 6 HOH A 105 705 1115 HOH HOH . I 6 HOH A 106 706 1150 HOH HOH . I 6 HOH A 107 707 1085 HOH HOH . I 6 HOH A 108 708 1002 HOH HOH . I 6 HOH A 109 709 1139 HOH HOH . I 6 HOH A 110 710 1166 HOH HOH . I 6 HOH A 111 711 1170 HOH HOH . I 6 HOH A 112 712 1078 HOH HOH . I 6 HOH A 113 713 1039 HOH HOH . I 6 HOH A 114 714 1081 HOH HOH . I 6 HOH A 115 715 1033 HOH HOH . I 6 HOH A 116 716 1144 HOH HOH . I 6 HOH A 117 717 1179 HOH HOH . I 6 HOH A 118 718 1132 HOH HOH . I 6 HOH A 119 719 1111 HOH HOH . I 6 HOH A 120 720 1157 HOH HOH . I 6 HOH A 121 721 1101 HOH HOH . I 6 HOH A 122 722 1092 HOH HOH . I 6 HOH A 123 723 1061 HOH HOH . I 6 HOH A 124 724 1158 HOH HOH . I 6 HOH A 125 725 1066 HOH HOH . I 6 HOH A 126 726 1169 HOH HOH . I 6 HOH A 127 727 1112 HOH HOH . I 6 HOH A 128 728 1054 HOH HOH . I 6 HOH A 129 729 1090 HOH HOH . I 6 HOH A 130 730 1099 HOH HOH . I 6 HOH A 131 731 1114 HOH HOH . I 6 HOH A 132 732 1106 HOH HOH . I 6 HOH A 133 733 1095 HOH HOH . I 6 HOH A 134 734 1133 HOH HOH . I 6 HOH A 135 735 1134 HOH HOH . I 6 HOH A 136 736 1084 HOH HOH . I 6 HOH A 137 737 1172 HOH HOH . I 6 HOH A 138 738 1089 HOH HOH . I 6 HOH A 139 739 1148 HOH HOH . I 6 HOH A 140 740 1046 HOH HOH . I 6 HOH A 141 741 1127 HOH HOH . I 6 HOH A 142 742 1016 HOH HOH . I 6 HOH A 143 743 1023 HOH HOH . I 6 HOH A 144 744 1124 HOH HOH . I 6 HOH A 145 745 1105 HOH HOH . I 6 HOH A 146 746 1145 HOH HOH . I 6 HOH A 147 747 1069 HOH HOH . I 6 HOH A 148 748 1052 HOH HOH . I 6 HOH A 149 749 1151 HOH HOH . I 6 HOH A 150 750 1051 HOH HOH . I 6 HOH A 151 751 1181 HOH HOH . I 6 HOH A 152 752 1162 HOH HOH . I 6 HOH A 153 753 1176 HOH HOH . I 6 HOH A 154 754 1116 HOH HOH . I 6 HOH A 155 755 1047 HOH HOH . I 6 HOH A 156 756 1110 HOH HOH . I 6 HOH A 157 757 1175 HOH HOH . I 6 HOH A 158 758 1165 HOH HOH . I 6 HOH A 159 759 1128 HOH HOH . I 6 HOH A 160 760 1055 HOH HOH . I 6 HOH A 161 761 1064 HOH HOH . I 6 HOH A 162 762 1171 HOH HOH . I 6 HOH A 163 763 1056 HOH HOH . I 6 HOH A 164 764 1068 HOH HOH . I 6 HOH A 165 765 1173 HOH HOH . I 6 HOH A 166 766 1178 HOH HOH . I 6 HOH A 167 767 1130 HOH HOH . I 6 HOH A 168 768 1074 HOH HOH . I 6 HOH A 169 769 1096 HOH HOH . I 6 HOH A 170 770 1050 HOH HOH . I 6 HOH A 171 771 1109 HOH HOH . I 6 HOH A 172 772 1142 HOH HOH . I 6 HOH A 173 773 1155 HOH HOH . I 6 HOH A 174 774 1118 HOH HOH . I 6 HOH A 175 775 1177 HOH HOH . I 6 HOH A 176 776 1141 HOH HOH . I 6 HOH A 177 777 1161 HOH HOH . I 6 HOH A 178 778 1126 HOH HOH . I 6 HOH A 179 779 1147 HOH HOH . I 6 HOH A 180 780 1168 HOH HOH . I 6 HOH A 181 781 1103 HOH HOH . I 6 HOH A 182 782 1113 HOH HOH . I 6 HOH A 183 783 1182 HOH HOH . I 6 HOH A 184 784 1117 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 21.254 _atom_site.Cartn_y 41.114 _atom_site.Cartn_z -11.797 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #