data_6JSN # _model_server_result.job_id 8jt5e2rZ_MBVTIgjEUvSYw _model_server_result.datetime_utc '2024-11-06 20:48:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jsn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 6JSN # _exptl.entry_id 6JSN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 511.565 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-[(5R)-3-azanyl-5-methyl-9,9-bis(oxidanylidene)-2,9$l^{6}-dithia-4-azaspiro[5.5]undec-3-en-5-yl]-4-fluoranyl-phenyl]-5-(fluoranylmethoxy)pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JSN _cell.length_a 101.705 _cell.length_b 101.705 _cell.length_c 170.422 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 179 1_555 A SG CYS 382 A CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 240 A CYS 241 1_555 A SG CYS 405 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf3 A SG CYS 292 A CYS 293 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C21 H23 F2 N5 O4 S2' _chem_comp.formula_weight 511.565 _chem_comp.id C7O _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-[(5R)-3-azanyl-5-methyl-9,9-bis(oxidanylidene)-2,9$l^{6}-dithia-4-azaspiro[5.5]undec-3-en-5-yl]-4-fluoranyl-phenyl]-5-(fluoranylmethoxy)pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 S2 C7O doub 70 n n O1 S2 C7O doub 71 n n S2 C8 C7O sing 72 n n S2 C7 C7O sing 73 n n C8 C9 C7O sing 74 n n C7 C6 C7O sing 75 n n C9 C5 C7O sing 76 n n C6 C5 C7O sing 77 n n F2 C21 C7O sing 78 n n C5 C4 C7O sing 79 n n C5 C2 C7O sing 80 n n C4 S1 C7O sing 81 n n C1 C2 C7O sing 82 n n C21 C20 C7O doub 83 n y C21 C10 C7O sing 84 n y C2 C10 C7O sing 85 n n C2 N1 C7O sing 86 n n C20 C19 C7O sing 87 n y C10 C11 C7O doub 88 n y S1 C3 C7O sing 89 n n N1 C3 C7O doub 90 n n C19 C12 C7O doub 91 n y C11 C12 C7O sing 92 n y C3 N2 C7O sing 93 n n C12 N3 C7O sing 94 n n N3 C13 C7O sing 95 n n O3 C13 C7O doub 96 n n C13 C14 C7O sing 97 n n C14 C18 C7O doub 98 n y C14 N4 C7O sing 99 n y C18 N5 C7O sing 100 n y N4 C15 C7O doub 101 n y N5 C16 C7O doub 102 n y C15 C16 C7O sing 103 n y C16 O4 C7O sing 104 n n O4 C17 C7O sing 105 n n C17 F1 C7O sing 106 n n C1 H1 C7O sing 107 n n C1 H2 C7O sing 108 n n C1 H3 C7O sing 109 n n C4 H4 C7O sing 110 n n C4 H5 C7O sing 111 n n C6 H6 C7O sing 112 n n C6 H7 C7O sing 113 n n C7 H8 C7O sing 114 n n C7 H9 C7O sing 115 n n N2 H10 C7O sing 116 n n N2 H11 C7O sing 117 n n C8 H12 C7O sing 118 n n C8 H13 C7O sing 119 n n N3 H14 C7O sing 120 n n C9 H15 C7O sing 121 n n C9 H16 C7O sing 122 n n C11 H17 C7O sing 123 n n C15 H18 C7O sing 124 n n C20 H19 C7O sing 125 n n C19 H20 C7O sing 126 n n C18 H21 C7O sing 127 n n C17 H22 C7O sing 128 n n C17 H23 C7O sing 129 n n # _atom_sites.entry_id 6JSN _atom_sites.fract_transf_matrix[1][1] 0.009832 _atom_sites.fract_transf_matrix[1][2] 0.005677 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 501 501 IOD IOD . C 2 IOD A 1 502 502 IOD IOD . D 2 IOD A 1 503 503 IOD IOD . E 2 IOD A 1 504 504 IOD IOD . F 2 IOD A 1 505 505 IOD IOD . G 2 IOD A 1 506 506 IOD IOD . H 3 GOL A 1 507 507 GOL GOL . I 4 C7O A 1 508 701 C7O MOL . J 5 HOH A 1 601 1011 HOH HOH . J 5 HOH A 2 602 1006 HOH HOH . J 5 HOH A 3 603 1010 HOH HOH . J 5 HOH A 4 604 1019 HOH HOH . J 5 HOH A 5 605 1026 HOH HOH . J 5 HOH A 6 606 1009 HOH HOH . J 5 HOH A 7 607 1021 HOH HOH . J 5 HOH A 8 608 1041 HOH HOH . J 5 HOH A 9 609 1020 HOH HOH . J 5 HOH A 10 610 1043 HOH HOH . J 5 HOH A 11 611 1004 HOH HOH . J 5 HOH A 12 612 1034 HOH HOH . J 5 HOH A 13 613 1051 HOH HOH . J 5 HOH A 14 614 1003 HOH HOH . J 5 HOH A 15 615 1046 HOH HOH . J 5 HOH A 16 616 1014 HOH HOH . J 5 HOH A 17 617 1032 HOH HOH . J 5 HOH A 18 618 1018 HOH HOH . J 5 HOH A 19 619 1035 HOH HOH . J 5 HOH A 20 620 1053 HOH HOH . J 5 HOH A 21 621 1001 HOH HOH . J 5 HOH A 22 622 1037 HOH HOH . J 5 HOH A 23 623 1036 HOH HOH . J 5 HOH A 24 624 1030 HOH HOH . J 5 HOH A 25 625 1047 HOH HOH . J 5 HOH A 26 626 1055 HOH HOH . J 5 HOH A 27 627 1024 HOH HOH . J 5 HOH A 28 628 1016 HOH HOH . J 5 HOH A 29 629 1027 HOH HOH . J 5 HOH A 30 630 1005 HOH HOH . J 5 HOH A 31 631 1038 HOH HOH . J 5 HOH A 32 632 1023 HOH HOH . J 5 HOH A 33 633 1045 HOH HOH . J 5 HOH A 34 634 1007 HOH HOH . J 5 HOH A 35 635 1017 HOH HOH . J 5 HOH A 36 636 1033 HOH HOH . J 5 HOH A 37 637 1025 HOH HOH . J 5 HOH A 38 638 1073 HOH HOH . J 5 HOH A 39 639 1008 HOH HOH . J 5 HOH A 40 640 1044 HOH HOH . J 5 HOH A 41 641 1022 HOH HOH . J 5 HOH A 42 642 1062 HOH HOH . J 5 HOH A 43 643 1002 HOH HOH . J 5 HOH A 44 644 1042 HOH HOH . J 5 HOH A 45 645 1039 HOH HOH . J 5 HOH A 46 646 1013 HOH HOH . J 5 HOH A 47 647 1012 HOH HOH . J 5 HOH A 48 648 1071 HOH HOH . J 5 HOH A 49 649 1052 HOH HOH . J 5 HOH A 50 650 1031 HOH HOH . J 5 HOH A 51 651 1056 HOH HOH . J 5 HOH A 52 652 1061 HOH HOH . J 5 HOH A 53 653 1065 HOH HOH . J 5 HOH A 54 654 1029 HOH HOH . J 5 HOH A 55 655 1077 HOH HOH . J 5 HOH A 56 656 1068 HOH HOH . J 5 HOH A 57 657 1015 HOH HOH . J 5 HOH A 58 658 1060 HOH HOH . J 5 HOH A 59 659 1066 HOH HOH . J 5 HOH A 60 660 1074 HOH HOH . J 5 HOH A 61 661 1070 HOH HOH . J 5 HOH A 62 662 1040 HOH HOH . J 5 HOH A 63 663 1049 HOH HOH . J 5 HOH A 64 664 1054 HOH HOH . J 5 HOH A 65 665 1028 HOH HOH . J 5 HOH A 66 666 1063 HOH HOH . J 5 HOH A 67 667 1064 HOH HOH . J 5 HOH A 68 668 1050 HOH HOH . J 5 HOH A 69 669 1057 HOH HOH . J 5 HOH A 70 670 1067 HOH HOH . J 5 HOH A 71 671 1058 HOH HOH . J 5 HOH A 72 672 1072 HOH HOH . J 5 HOH A 73 673 1059 HOH HOH . J 5 HOH A 74 674 1048 HOH HOH . J 5 HOH A 75 675 1069 HOH HOH . J 5 HOH A 76 676 1076 HOH HOH . J 5 HOH A 77 677 1075 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C7O . . . I 4 -16.908 -36.992 -9.187 1 35.61 ? C1 C7O 508 A 1 HETATM 2 C C2 C7O . . . I 4 -17.189 -38.428 -8.722 1 36.28 ? C2 C7O 508 A 1 HETATM 3 C C3 C7O . . . I 4 -15.702 -39.59 -7.167 1 34.17 ? C3 C7O 508 A 1 HETATM 4 C C4 C7O . . . I 4 -16.793 -40.864 -9.464 1 35.4 ? C4 C7O 508 A 1 HETATM 5 C C5 C7O . . . I 4 -16.697 -39.345 -9.878 1 37.52 ? C5 C7O 508 A 1 HETATM 6 C C6 C7O . . . I 4 -15.172 -39.27 -10.336 1 39.78 ? C6 C7O 508 A 1 HETATM 7 C C7 C7O . . . I 4 -14.58 -40.191 -11.413 1 41.84 ? C7 C7O 508 A 1 HETATM 8 N N1 C7O . . . I 4 -16.289 -38.562 -7.564 1 35.22 ? N1 C7O 508 A 1 HETATM 9 N N2 C7O . . . I 4 -14.829 -39.511 -6.025 1 34.38 ? N2 C7O 508 A 1 HETATM 10 O O1 C7O . . . I 4 -15.602 -38.691 -13.298 1 38.86 ? O1 C7O 508 A 1 HETATM 11 C C8 C7O . . . I 4 -17.386 -40.335 -12.318 1 41.97 ? C8 C7O 508 A 1 HETATM 12 O O2 C7O . . . I 4 -15.243 -41.11 -13.712 1 44.29 ? O2 C7O 508 A 1 HETATM 13 N N3 C7O . . . I 4 -20.397 -40.495 -5.542 1 34.42 ? N3 C7O 508 A 1 HETATM 14 C C9 C7O . . . I 4 -17.709 -39.458 -11.1 1 39.87 ? C9 C7O 508 A 1 HETATM 15 C C10 C7O . . . I 4 -18.669 -38.647 -8.301 1 36.21 ? C10 C7O 508 A 1 HETATM 16 C C11 C7O . . . I 4 -18.972 -39.439 -7.18 1 34.98 ? C11 C7O 508 A 1 HETATM 17 C C12 C7O . . . I 4 -20.278 -39.678 -6.759 1 34.02 ? C12 C7O 508 A 1 HETATM 18 C C13 C7O . . . I 4 -21.625 -40.952 -4.878 1 35.01 ? C13 C7O 508 A 1 HETATM 19 C C14 C7O . . . I 4 -21.399 -41.746 -3.57 1 36.23 ? C14 C7O 508 A 1 HETATM 20 C C15 C7O . . . I 4 -19.97 -42.266 -1.817 1 36.14 ? C15 C7O 508 A 1 HETATM 21 F F2 C7O . . . I 4 -19.578 -37.29 -10.071 1 35.64 ? F2 C7O 508 A 1 HETATM 22 C C21 C7O . . . I 4 -19.752 -38.068 -8.981 1 35.3 ? C21 C7O 508 A 1 HETATM 23 S S2 C7O . . . I 4 -15.691 -40.065 -12.784 1 42.65 ? S2 C7O 508 A 1 HETATM 24 S S1 C7O . . . I 4 -15.864 -41.191 -7.953 1 35.01 ? S1 C7O 508 A 1 HETATM 25 C C20 C7O . . . I 4 -21.059 -38.293 -8.551 1 36.07 ? C20 C7O 508 A 1 HETATM 26 C C19 C7O . . . I 4 -21.334 -39.09 -7.429 1 34.69 ? C19 C7O 508 A 1 HETATM 27 O O3 C7O . . . I 4 -22.719 -40.733 -5.253 1 34.58 ? O3 C7O 508 A 1 HETATM 28 C C18 C7O . . . I 4 -22.389 -42.555 -3.013 1 37.13 ? C18 C7O 508 A 1 HETATM 29 N N5 C7O . . . I 4 -22.122 -43.19 -1.87 1 38.01 ? N5 C7O 508 A 1 HETATM 30 C C16 C7O . . . I 4 -20.941 -43.069 -1.257 1 36.97 ? C16 C7O 508 A 1 HETATM 31 N N4 C7O . . . I 4 -20.232 -41.605 -2.946 1 35.5 ? N4 C7O 508 A 1 HETATM 32 O O4 C7O . . . I 4 -20.623 -43.729 -0.048 1 40.55 ? O4 C7O 508 A 1 HETATM 33 C C17 C7O . . . I 4 -21.718 -44.363 0.595 1 40.97 ? C17 C7O 508 A 1 HETATM 34 F F1 C7O . . . I 4 -22.639 -43.442 1.029 1 43.61 ? F1 C7O 508 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #