data_6JT1
#
_model_server_result.job_id            njcvMk85l4vjCr6k3g5UFw 
_model_server_result.datetime_utc      '2024-10-19 03:48:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jt1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    6JT1 
#
_exptl.entry_id    6JT1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JT1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JT1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6JT1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           HEM 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1000 
_pdbx_nonpoly_scheme.auth_seq_num     1000 
_pdbx_nonpoly_scheme.pdb_mon_id       HEM 
_pdbx_nonpoly_scheme.auth_mon_id      HEM 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 124.316 112.436 134.741 1 84.38 ? CHA HEM 1000 B 1 
HETATM 2 C CHB HEM . . . C 3 120.457 113.013 137.669 1 79.04 ? CHB HEM 1000 B 1 
HETATM 3 C CHC HEM . . . C 3 118.288 109.194 135.56 1 63.72 ? CHC HEM 1000 B 1 
HETATM 4 C CHD HEM . . . C 3 122.069 108.746 132.515 1 69.01 ? CHD HEM 1000 B 1 
HETATM 5 C C1A HEM . . . C 3 123.456 112.908 135.712 1 86.42 ? C1A HEM 1000 B 1 
HETATM 6 C C2A HEM . . . C 3 123.721 114.027 136.58 1 80.98 ? C2A HEM 1000 B 1 
HETATM 7 C C3A HEM . . . C 3 122.674 114.192 137.392 1 72.42 ? C3A HEM 1000 B 1 
HETATM 8 C C4A HEM . . . C 3 121.688 113.184 137.064 1 74 ? C4A HEM 1000 B 1 
HETATM 9 C CMA HEM . . . C 3 122.524 115.261 138.491 1 90.59 ? CMA HEM 1000 B 1 
HETATM 10 C CAA HEM . . . C 3 125.037 114.819 136.543 1 95.85 ? CAA HEM 1000 B 1 
HETATM 11 C CBA HEM . . . C 3 124.809 116.259 136.14 1 102.09 ? CBA HEM 1000 B 1 
HETATM 12 C CGA HEM . . . C 3 126.145 116.898 135.875 1 137.07 ? CGA HEM 1000 B 1 
HETATM 13 O O1A HEM . . . C 3 126.48 117.903 136.551 1 156.13 ? O1A HEM 1000 B 1 
HETATM 14 O O2A HEM . . . C 3 126.887 116.397 134.991 1 143.78 ? O2A HEM 1000 B 1 
HETATM 15 C C1B HEM . . . C 3 119.551 112.008 137.394 1 79.23 ? C1B HEM 1000 B 1 
HETATM 16 C C2B HEM . . . C 3 118.328 111.734 138.114 1 71.97 ? C2B HEM 1000 B 1 
HETATM 17 C C3B HEM . . . C 3 117.721 110.698 137.542 1 66.81 ? C3B HEM 1000 B 1 
HETATM 18 C C4B HEM . . . C 3 118.541 110.245 136.429 1 68.17 ? C4B HEM 1000 B 1 
HETATM 19 C CMB HEM . . . C 3 117.785 112.511 139.327 1 84.88 ? CMB HEM 1000 B 1 
HETATM 20 C CAB HEM . . . C 3 116.384 110.123 138.046 1 72.68 ? CAB HEM 1000 B 1 
HETATM 21 C CBB HEM . . . C 3 115.616 109.37 137.259 1 76.67 ? CBB HEM 1000 B 1 
HETATM 22 C C1C HEM . . . C 3 119.112 108.742 134.542 1 64.93 ? C1C HEM 1000 B 1 
HETATM 23 C C2C HEM . . . C 3 118.849 107.636 133.648 1 58.71 ? C2C HEM 1000 B 1 
HETATM 24 C C3C HEM . . . C 3 119.879 107.504 132.811 1 56.87 ? C3C HEM 1000 B 1 
HETATM 25 C C4C HEM . . . C 3 120.855 108.524 133.129 1 62.98 ? C4C HEM 1000 B 1 
HETATM 26 C CMC HEM . . . C 3 117.584 106.756 133.652 1 60.06 ? CMC HEM 1000 B 1 
HETATM 27 C CAC HEM . . . C 3 119.956 106.436 131.706 1 56.59 ? CAC HEM 1000 B 1 
HETATM 28 C CBC HEM . . . C 3 120.979 106.383 130.854 1 78.06 ? CBC HEM 1000 B 1 
HETATM 29 C C1D HEM . . . C 3 123.03 109.657 132.901 1 80.72 ? C1D HEM 1000 B 1 
HETATM 30 C C2D HEM . . . C 3 124.39 109.724 132.403 1 81.33 ? C2D HEM 1000 B 1 
HETATM 31 C C3D HEM . . . C 3 125.017 110.732 133.014 1 74.74 ? C3D HEM 1000 B 1 
HETATM 32 C C4D HEM . . . C 3 124.075 111.355 133.922 1 78.34 ? C4D HEM 1000 B 1 
HETATM 33 C CMD HEM . . . C 3 124.991 108.771 131.351 1 93.3 ? CMD HEM 1000 B 1 
HETATM 34 C CAD HEM . . . C 3 126.471 111.17 132.774 1 89.71 ? CAD HEM 1000 B 1 
HETATM 35 C CBD HEM . . . C 3 126.563 111.783 131.379 1 100.27 ? CBD HEM 1000 B 1 
HETATM 36 C CGD HEM . . . C 3 127.25 113.117 131.445 1 106.96 ? CGD HEM 1000 B 1 
HETATM 37 O O1D HEM . . . C 3 127.628 113.551 132.565 1 106.79 ? O1D HEM 1000 B 1 
HETATM 38 O O2D HEM . . . C 3 127.412 113.753 130.372 1 113.48 ? O2D HEM 1000 B 1 
HETATM 39 N NA HEM . . . C 3 122.198 112.421 136.027 1 87.24 ? NA HEM 1000 B 1 
HETATM 40 N NB HEM . . . C 3 119.644 111.08 136.373 1 79.16 ? NB HEM 1000 B 1 
HETATM 41 N NC HEM . . . C 3 120.346 109.255 134.185 1 67.84 ? NC HEM 1000 B 1 
HETATM 42 N ND HEM . . . C 3 122.872 110.673 133.825 1 85.98 ? ND HEM 1000 B 1 
HETATM 43 FE FE HEM . . . C 3 121.065 111.083 134.817 1 104.02 ? FE HEM 1000 B 1 
#
_model_server_stats.io_time_ms              93 
_model_server_stats.parse_time_ms           99 
_model_server_stats.create_model_time_ms    113 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#