data_6JT2
#
_model_server_result.job_id            T9vEHdOghBGYDLKjj2CLIA 
_model_server_result.datetime_utc      '2024-11-05 05:26:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jt2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1000}' 
#
_entry.id    6JT2 
#
_exptl.entry_id    6JT2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JT2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JT2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 486 A ASP 486 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc2 A OD2 ASP 486 A ASP 486 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc3 A OD1 ASP 486 A ASP 486 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc4 A O ILE 487 A ILE 487 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc5 A OD2 ASP 530 A ASP 530 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc6 A OD1 ASP 530 A ASP 530 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc7 A OD2 ASP 530 A ASP 530 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc8 C O2B G2P . A G2P 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc9 C O1A G2P . A G2P 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc10 C O1A G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc11 C O5' G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     6JT2 
_atom_sites.fract_transf_matrix[1][1]    0.003987 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003987 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003987 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 G2P A 1 1001 1001 G2P G2P . 
D 4 MG A 1 1002 1002 MG MG . 
E 4 MG A 1 1003 1003 MG MG . 
F 5 HEM B 1 1000 1000 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 5 103.035 115.626 113.997 1 24.2 ? CHA HEM 1000 B 1 
HETATM 2 C CHB HEM . . . F 5 103.81 115.388 118.773 1 56.92 ? CHB HEM 1000 B 1 
HETATM 3 C CHC HEM . . . F 5 102.133 110.831 118.788 1 37.08 ? CHC HEM 1000 B 1 
HETATM 4 C CHD HEM . . . F 5 100.819 111.31 114.145 1 34.94 ? CHD HEM 1000 B 1 
HETATM 5 C C1A HEM . . . F 5 103.329 115.998 115.286 1 34.62 ? C1A HEM 1000 B 1 
HETATM 6 C C2A HEM . . . F 5 103.682 117.325 115.759 1 43.5 ? C2A HEM 1000 B 1 
HETATM 7 C C3A HEM . . . F 5 103.892 117.242 117.073 1 48.1 ? C3A HEM 1000 B 1 
HETATM 8 C C4A HEM . . . F 5 103.686 115.872 117.49 1 52.01 ? C4A HEM 1000 B 1 
HETATM 9 C CMA HEM . . . F 5 104.291 118.407 117.999 1 67.1 ? CMA HEM 1000 B 1 
HETATM 10 C CAA HEM . . . F 5 103.8 118.623 114.926 1 56.58 ? CAA HEM 1000 B 1 
HETATM 11 C CBA HEM . . . F 5 102.514 118.92 114.157 1 67.5 ? CBA HEM 1000 B 1 
HETATM 12 C CGA HEM . . . F 5 102.524 120.347 113.668 1 82.75 ? CGA HEM 1000 B 1 
HETATM 13 O O1A HEM . . . F 5 103.355 121.151 114.166 1 83.05 ? O1A HEM 1000 B 1 
HETATM 14 O O2A HEM . . . F 5 101.695 120.685 112.783 1 84.13 ? O2A HEM 1000 B 1 
HETATM 15 C C1B HEM . . . F 5 103.451 114.129 119.202 1 46.07 ? C1B HEM 1000 B 1 
HETATM 16 C C2B HEM . . . F 5 103.591 113.617 120.546 1 38.81 ? C2B HEM 1000 B 1 
HETATM 17 C C3B HEM . . . F 5 103.136 112.363 120.569 1 37.53 ? C3B HEM 1000 B 1 
HETATM 18 C C4B HEM . . . F 5 102.681 112.021 119.227 1 36.81 ? C4B HEM 1000 B 1 
HETATM 19 C CMB HEM . . . F 5 104.171 114.391 121.75 1 55.54 ? CMB HEM 1000 B 1 
HETATM 20 C CAB HEM . . . F 5 103.128 111.491 121.847 1 51.9 ? CAB HEM 1000 B 1 
HETATM 21 C CBB HEM . . . F 5 102.693 110.229 121.856 1 67.22 ? CBB HEM 1000 B 1 
HETATM 22 C C1C HEM . . . F 5 101.535 110.602 117.564 1 35.52 ? C1C HEM 1000 B 1 
HETATM 23 C C2C HEM . . . F 5 100.645 109.506 117.229 1 37.29 ? C2C HEM 1000 B 1 
HETATM 24 C C3C HEM . . . F 5 100.277 109.622 115.956 1 30.11 ? C3C HEM 1000 B 1 
HETATM 25 C C4C HEM . . . F 5 100.921 110.811 115.422 1 32.69 ? C4C HEM 1000 B 1 
HETATM 26 C CMC HEM . . . F 5 100.182 108.372 118.164 1 46.12 ? CMC HEM 1000 B 1 
HETATM 27 C CAC HEM . . . F 5 99.327 108.631 115.242 1 29.99 ? CAC HEM 1000 B 1 
HETATM 28 C CBC HEM . . . F 5 98.991 108.766 113.956 1 39.2 ? CBC HEM 1000 B 1 
HETATM 29 C C1D HEM . . . F 5 101.297 112.525 113.714 1 35.85 ? C1D HEM 1000 B 1 
HETATM 30 C C2D HEM . . . F 5 101.099 113.084 112.396 1 35.33 ? C2D HEM 1000 B 1 
HETATM 31 C C3D HEM . . . F 5 101.706 114.265 112.355 1 29.08 ? C3D HEM 1000 B 1 
HETATM 32 C C4D HEM . . . F 5 102.316 114.511 113.641 1 25.96 ? C4D HEM 1000 B 1 
HETATM 33 C CMD HEM . . . F 5 100.318 112.435 111.235 1 41.63 ? CMD HEM 1000 B 1 
HETATM 34 C CAD HEM . . . F 5 101.735 115.202 111.139 1 36.47 ? CAD HEM 1000 B 1 
HETATM 35 C CBD HEM . . . F 5 100.961 116.448 111.534 1 49.21 ? CBD HEM 1000 B 1 
HETATM 36 C CGD HEM . . . F 5 100.659 117.23 110.295 1 72 ? CGD HEM 1000 B 1 
HETATM 37 O O1D HEM . . . F 5 101.115 116.806 109.201 1 80.92 ? O1D HEM 1000 B 1 
HETATM 38 O O2D HEM . . . F 5 99.962 118.267 110.417 1 89.22 ? O2D HEM 1000 B 1 
HETATM 39 N NA HEM . . . F 5 103.344 115.141 116.37 1 42.9 ? NA HEM 1000 B 1 
HETATM 40 N NB HEM . . . F 5 102.894 113.129 118.429 1 38.82 ? NB HEM 1000 B 1 
HETATM 41 N NC HEM . . . F 5 101.678 111.381 116.432 1 33.96 ? NC HEM 1000 B 1 
HETATM 42 N ND HEM . . . F 5 102.048 113.424 114.451 1 31.51 ? ND HEM 1000 B 1 
HETATM 43 FE FE HEM . . . F 5 102.496 113.282 116.436 1 53.43 ? FE HEM 1000 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#