data_6JT6 # _model_server_result.job_id jcL6zw5GEWOIkHpuQTE7Ug _model_server_result.datetime_utc '2024-11-23 01:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6JT6 # _exptl.entry_id 6JT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.68 _cell.angle_gamma 90 _cell.entry_id 6JT6 _cell.length_a 39.138 _cell.length_b 59.741 _cell.length_c 40.858 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 138 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? covale ? covale1 A ND2 ASN 122 A ASN 140 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A SD MET 65 A MET 83 1_555 C FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A NE2 HIS 164 A HIS 182 1_555 C FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 346 n n C1 O1 NAG sing 347 n n C1 O5 NAG sing 348 n n C1 H1 NAG sing 349 n n C2 C3 NAG sing 350 n n C2 N2 NAG sing 351 n n C2 H2 NAG sing 352 n n C3 C4 NAG sing 353 n n C3 O3 NAG sing 354 n n C3 H3 NAG sing 355 n n C4 C5 NAG sing 356 n n C4 O4 NAG sing 357 n n C4 H4 NAG sing 358 n n C5 C6 NAG sing 359 n n C5 O5 NAG sing 360 n n C5 H5 NAG sing 361 n n C6 O6 NAG sing 362 n n C6 H61 NAG sing 363 n n C6 H62 NAG sing 364 n n C7 C8 NAG sing 365 n n C7 N2 NAG sing 366 n n C7 O7 NAG doub 367 n n C8 H81 NAG sing 368 n n C8 H82 NAG sing 369 n n C8 H83 NAG sing 370 n n N2 HN2 NAG sing 371 n n O1 HO1 NAG sing 372 n n O3 HO3 NAG sing 373 n n O4 HO4 NAG sing 374 n n O6 HO6 NAG sing 375 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6JT6 _atom_sites.fract_transf_matrix[1][1] 0.025551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000305 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 221 NAG NAG . C 3 HEM A 1 302 222 HEM HEM . D 4 MPD A 1 303 301 MPD MPD . E 4 MPD A 1 304 302 MPD MPD . F 5 ACT A 1 305 303 ACT ACT . G 6 HOH A 1 401 155 HOH HOH . G 6 HOH A 2 402 55 HOH HOH . G 6 HOH A 3 403 149 HOH HOH . G 6 HOH A 4 404 151 HOH HOH . G 6 HOH A 5 405 86 HOH HOH . G 6 HOH A 6 406 69 HOH HOH . G 6 HOH A 7 407 42 HOH HOH . G 6 HOH A 8 408 47 HOH HOH . G 6 HOH A 9 409 97 HOH HOH . G 6 HOH A 10 410 75 HOH HOH . G 6 HOH A 11 411 8 HOH HOH . G 6 HOH A 12 412 146 HOH HOH . G 6 HOH A 13 413 23 HOH HOH . G 6 HOH A 14 414 2 HOH HOH . G 6 HOH A 15 415 52 HOH HOH . G 6 HOH A 16 416 89 HOH HOH . G 6 HOH A 17 417 32 HOH HOH . G 6 HOH A 18 418 11 HOH HOH . G 6 HOH A 19 419 110 HOH HOH . G 6 HOH A 20 420 6 HOH HOH . G 6 HOH A 21 421 67 HOH HOH . G 6 HOH A 22 422 3 HOH HOH . G 6 HOH A 23 423 85 HOH HOH . G 6 HOH A 24 424 24 HOH HOH . G 6 HOH A 25 425 31 HOH HOH . G 6 HOH A 26 426 105 HOH HOH . G 6 HOH A 27 427 37 HOH HOH . G 6 HOH A 28 428 74 HOH HOH . G 6 HOH A 29 429 78 HOH HOH . G 6 HOH A 30 430 4 HOH HOH . G 6 HOH A 31 431 22 HOH HOH . G 6 HOH A 32 432 15 HOH HOH . G 6 HOH A 33 433 21 HOH HOH . G 6 HOH A 34 434 154 HOH HOH . G 6 HOH A 35 435 107 HOH HOH . G 6 HOH A 36 436 36 HOH HOH . G 6 HOH A 37 437 25 HOH HOH . G 6 HOH A 38 438 66 HOH HOH . G 6 HOH A 39 439 5 HOH HOH . G 6 HOH A 40 440 135 HOH HOH . G 6 HOH A 41 441 50 HOH HOH . G 6 HOH A 42 442 124 HOH HOH . G 6 HOH A 43 443 76 HOH HOH . G 6 HOH A 44 444 27 HOH HOH . G 6 HOH A 45 445 80 HOH HOH . G 6 HOH A 46 446 136 HOH HOH . G 6 HOH A 47 447 40 HOH HOH . G 6 HOH A 48 448 17 HOH HOH . G 6 HOH A 49 449 100 HOH HOH . G 6 HOH A 50 450 82 HOH HOH . G 6 HOH A 51 451 109 HOH HOH . G 6 HOH A 52 452 148 HOH HOH . G 6 HOH A 53 453 41 HOH HOH . G 6 HOH A 54 454 39 HOH HOH . G 6 HOH A 55 455 68 HOH HOH . G 6 HOH A 56 456 131 HOH HOH . G 6 HOH A 57 457 116 HOH HOH . G 6 HOH A 58 458 130 HOH HOH . G 6 HOH A 59 459 147 HOH HOH . G 6 HOH A 60 460 93 HOH HOH . G 6 HOH A 61 461 38 HOH HOH . G 6 HOH A 62 462 56 HOH HOH . G 6 HOH A 63 463 1 HOH HOH . G 6 HOH A 64 464 46 HOH HOH . G 6 HOH A 65 465 19 HOH HOH . G 6 HOH A 66 466 10 HOH HOH . G 6 HOH A 67 467 16 HOH HOH . G 6 HOH A 68 468 13 HOH HOH . G 6 HOH A 69 469 133 HOH HOH . G 6 HOH A 70 470 49 HOH HOH . G 6 HOH A 71 471 33 HOH HOH . G 6 HOH A 72 472 43 HOH HOH . G 6 HOH A 73 473 44 HOH HOH . G 6 HOH A 74 474 20 HOH HOH . G 6 HOH A 75 475 121 HOH HOH . G 6 HOH A 76 476 26 HOH HOH . G 6 HOH A 77 477 59 HOH HOH . G 6 HOH A 78 478 18 HOH HOH . G 6 HOH A 79 479 14 HOH HOH . G 6 HOH A 80 480 28 HOH HOH . G 6 HOH A 81 481 58 HOH HOH . G 6 HOH A 82 482 77 HOH HOH . G 6 HOH A 83 483 54 HOH HOH . G 6 HOH A 84 484 12 HOH HOH . G 6 HOH A 85 485 122 HOH HOH . G 6 HOH A 86 486 102 HOH HOH . G 6 HOH A 87 487 81 HOH HOH . G 6 HOH A 88 488 103 HOH HOH . G 6 HOH A 89 489 118 HOH HOH . G 6 HOH A 90 490 35 HOH HOH . G 6 HOH A 91 491 7 HOH HOH . G 6 HOH A 92 492 138 HOH HOH . G 6 HOH A 93 493 91 HOH HOH . G 6 HOH A 94 494 99 HOH HOH . G 6 HOH A 95 495 48 HOH HOH . G 6 HOH A 96 496 111 HOH HOH . G 6 HOH A 97 497 60 HOH HOH . G 6 HOH A 98 498 30 HOH HOH . G 6 HOH A 99 499 72 HOH HOH . G 6 HOH A 100 500 45 HOH HOH . G 6 HOH A 101 501 9 HOH HOH . G 6 HOH A 102 502 98 HOH HOH . G 6 HOH A 103 503 129 HOH HOH . G 6 HOH A 104 504 141 HOH HOH . G 6 HOH A 105 505 113 HOH HOH . G 6 HOH A 106 506 142 HOH HOH . G 6 HOH A 107 507 94 HOH HOH . G 6 HOH A 108 508 92 HOH HOH . G 6 HOH A 109 509 34 HOH HOH . G 6 HOH A 110 510 143 HOH HOH . G 6 HOH A 111 511 96 HOH HOH . G 6 HOH A 112 512 53 HOH HOH . G 6 HOH A 113 513 101 HOH HOH . G 6 HOH A 114 514 90 HOH HOH . G 6 HOH A 115 515 29 HOH HOH . G 6 HOH A 116 516 132 HOH HOH . G 6 HOH A 117 517 83 HOH HOH . G 6 HOH A 118 518 70 HOH HOH . G 6 HOH A 119 519 126 HOH HOH . G 6 HOH A 120 520 106 HOH HOH . G 6 HOH A 121 521 153 HOH HOH . G 6 HOH A 122 522 51 HOH HOH . G 6 HOH A 123 523 63 HOH HOH . G 6 HOH A 124 524 114 HOH HOH . G 6 HOH A 125 525 115 HOH HOH . G 6 HOH A 126 526 125 HOH HOH . G 6 HOH A 127 527 79 HOH HOH . G 6 HOH A 128 528 88 HOH HOH . G 6 HOH A 129 529 128 HOH HOH . G 6 HOH A 130 530 73 HOH HOH . G 6 HOH A 131 531 123 HOH HOH . G 6 HOH A 132 532 104 HOH HOH . G 6 HOH A 133 533 134 HOH HOH . G 6 HOH A 134 534 139 HOH HOH . G 6 HOH A 135 535 57 HOH HOH . G 6 HOH A 136 536 144 HOH HOH . G 6 HOH A 137 537 65 HOH HOH . G 6 HOH A 138 538 95 HOH HOH . G 6 HOH A 139 539 64 HOH HOH . G 6 HOH A 140 540 145 HOH HOH . G 6 HOH A 141 541 127 HOH HOH . G 6 HOH A 142 542 137 HOH HOH . G 6 HOH A 143 543 87 HOH HOH . G 6 HOH A 144 544 61 HOH HOH . G 6 HOH A 145 545 112 HOH HOH . G 6 HOH A 146 546 150 HOH HOH . G 6 HOH A 147 547 108 HOH HOH . G 6 HOH A 148 548 71 HOH HOH . G 6 HOH A 149 549 120 HOH HOH . G 6 HOH A 150 550 62 HOH HOH . G 6 HOH A 151 551 84 HOH HOH . G 6 HOH A 152 552 117 HOH HOH . G 6 HOH A 153 553 152 HOH HOH . G 6 HOH A 154 554 119 HOH HOH . G 6 HOH A 155 555 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 15.263 14.055 13.969 1 35.44 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . B 2 15.756 15.071 14.995 1 38.38 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . B 2 17.289 15.139 15.003 1 40.34 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . B 2 17.956 13.758 15.085 1 39.33 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . B 2 17.399 12.799 14.018 1 36.54 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . B 2 17.834 11.372 14.33 1 38.64 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . B 2 14.233 17.018 15.179 1 45.8 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . B 2 13.913 18.315 14.481 1 47.31 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . B 2 15.225 16.35 14.594 1 41.44 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . B 2 17.691 15.911 16.13 1 41.43 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . B 2 19.388 13.91 14.949 1 39.75 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . B 2 15.96 12.807 13.982 1 35.41 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . B 2 17.569 10.461 13.247 1 36.72 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . B 2 13.64 16.634 16.184 1 46.82 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #