data_6JTG # _model_server_result.job_id 5xw_GY34zOAoqPWhFgG6Qg _model_server_result.datetime_utc '2024-10-18 19:32:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jtg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6JTG # _exptl.entry_id 6JTG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 66.007 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JTG _cell.length_a 77.89 _cell.length_b 77.89 _cell.length_c 171.547 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JTG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -85.7735 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 36 A SER 36 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc2 A OG1 THR 40 A THR 40 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc3 A O GLY 55 A GLY 55 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc4 A O GLU 58 A GLU 58 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc5 A OG1 THR 61 A THR 61 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 B O3B GDP . A GDP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc7 B O1B GDP . A GDP 401 1_555 D BE BEF . A BEF 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.718 ? metalc ? metalc8 B O1B GDP . A GDP 401 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc9 B O1A GDP . A GDP 401 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.281 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 70 n n BE F2 BEF sing 71 n n BE F3 BEF sing 72 n n # _atom_sites.entry_id 6JTG _atom_sites.fract_transf_matrix[1][1] 0.012839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 401 1000 GDP GDP . C 3 MG A 1 402 1003 MG MG . D 4 BEF A 1 403 1001 BEF BEF . E 5 K A 1 404 1004 K K . F 6 HOH A 1 501 111 HOH HOH . F 6 HOH A 2 502 23 HOH HOH . F 6 HOH A 3 503 120 HOH HOH . F 6 HOH A 4 504 58 HOH HOH . F 6 HOH A 5 505 146 HOH HOH . F 6 HOH A 6 506 21 HOH HOH . F 6 HOH A 7 507 32 HOH HOH . F 6 HOH A 8 508 66 HOH HOH . F 6 HOH A 9 509 42 HOH HOH . F 6 HOH A 10 510 125 HOH HOH . F 6 HOH A 11 511 123 HOH HOH . F 6 HOH A 12 512 124 HOH HOH . F 6 HOH A 13 513 143 HOH HOH . F 6 HOH A 14 514 100 HOH HOH . F 6 HOH A 15 515 27 HOH HOH . F 6 HOH A 16 516 15 HOH HOH . F 6 HOH A 17 517 5 HOH HOH . F 6 HOH A 18 518 97 HOH HOH . F 6 HOH A 19 519 36 HOH HOH . F 6 HOH A 20 520 24 HOH HOH . F 6 HOH A 21 521 39 HOH HOH . F 6 HOH A 22 522 108 HOH HOH . F 6 HOH A 23 523 61 HOH HOH . F 6 HOH A 24 524 48 HOH HOH . F 6 HOH A 25 525 38 HOH HOH . F 6 HOH A 26 526 76 HOH HOH . F 6 HOH A 27 527 37 HOH HOH . F 6 HOH A 28 528 73 HOH HOH . F 6 HOH A 29 529 96 HOH HOH . F 6 HOH A 30 530 20 HOH HOH . F 6 HOH A 31 531 91 HOH HOH . F 6 HOH A 32 532 121 HOH HOH . F 6 HOH A 33 533 128 HOH HOH . F 6 HOH A 34 534 51 HOH HOH . F 6 HOH A 35 535 65 HOH HOH . F 6 HOH A 36 536 1 HOH HOH . F 6 HOH A 37 537 2 HOH HOH . F 6 HOH A 38 538 9 HOH HOH . F 6 HOH A 39 539 82 HOH HOH . F 6 HOH A 40 540 30 HOH HOH . F 6 HOH A 41 541 68 HOH HOH . F 6 HOH A 42 542 45 HOH HOH . F 6 HOH A 43 543 7 HOH HOH . F 6 HOH A 44 544 104 HOH HOH . F 6 HOH A 45 545 8 HOH HOH . F 6 HOH A 46 546 99 HOH HOH . F 6 HOH A 47 547 62 HOH HOH . F 6 HOH A 48 548 84 HOH HOH . F 6 HOH A 49 549 44 HOH HOH . F 6 HOH A 50 550 34 HOH HOH . F 6 HOH A 51 551 12 HOH HOH . F 6 HOH A 52 552 16 HOH HOH . F 6 HOH A 53 553 57 HOH HOH . F 6 HOH A 54 554 14 HOH HOH . F 6 HOH A 55 555 33 HOH HOH . F 6 HOH A 56 556 149 HOH HOH . F 6 HOH A 57 557 11 HOH HOH . F 6 HOH A 58 558 106 HOH HOH . F 6 HOH A 59 559 31 HOH HOH . F 6 HOH A 60 560 102 HOH HOH . F 6 HOH A 61 561 4 HOH HOH . F 6 HOH A 62 562 77 HOH HOH . F 6 HOH A 63 563 19 HOH HOH . F 6 HOH A 64 564 26 HOH HOH . F 6 HOH A 65 565 29 HOH HOH . F 6 HOH A 66 566 92 HOH HOH . F 6 HOH A 67 567 116 HOH HOH . F 6 HOH A 68 568 54 HOH HOH . F 6 HOH A 69 569 145 HOH HOH . F 6 HOH A 70 570 35 HOH HOH . F 6 HOH A 71 571 144 HOH HOH . F 6 HOH A 72 572 40 HOH HOH . F 6 HOH A 73 573 98 HOH HOH . F 6 HOH A 74 574 136 HOH HOH . F 6 HOH A 75 575 53 HOH HOH . F 6 HOH A 76 576 10 HOH HOH . F 6 HOH A 77 577 22 HOH HOH . F 6 HOH A 78 578 75 HOH HOH . F 6 HOH A 79 579 94 HOH HOH . F 6 HOH A 80 580 69 HOH HOH . F 6 HOH A 81 581 28 HOH HOH . F 6 HOH A 82 582 41 HOH HOH . F 6 HOH A 83 583 127 HOH HOH . F 6 HOH A 84 584 105 HOH HOH . F 6 HOH A 85 585 86 HOH HOH . F 6 HOH A 86 586 151 HOH HOH . F 6 HOH A 87 587 49 HOH HOH . F 6 HOH A 88 588 46 HOH HOH . F 6 HOH A 89 589 79 HOH HOH . F 6 HOH A 90 590 3 HOH HOH . F 6 HOH A 91 591 87 HOH HOH . F 6 HOH A 92 592 126 HOH HOH . F 6 HOH A 93 593 95 HOH HOH . F 6 HOH A 94 594 109 HOH HOH . F 6 HOH A 95 595 101 HOH HOH . F 6 HOH A 96 596 47 HOH HOH . F 6 HOH A 97 597 67 HOH HOH . F 6 HOH A 98 598 55 HOH HOH . F 6 HOH A 99 599 71 HOH HOH . F 6 HOH A 100 600 60 HOH HOH . F 6 HOH A 101 601 78 HOH HOH . F 6 HOH A 102 602 103 HOH HOH . F 6 HOH A 103 603 88 HOH HOH . F 6 HOH A 104 604 141 HOH HOH . F 6 HOH A 105 605 130 HOH HOH . F 6 HOH A 106 606 56 HOH HOH . F 6 HOH A 107 607 80 HOH HOH . F 6 HOH A 108 608 129 HOH HOH . F 6 HOH A 109 609 72 HOH HOH . F 6 HOH A 110 610 43 HOH HOH . F 6 HOH A 111 611 148 HOH HOH . F 6 HOH A 112 612 113 HOH HOH . F 6 HOH A 113 613 83 HOH HOH . F 6 HOH A 114 614 114 HOH HOH . F 6 HOH A 115 615 89 HOH HOH . F 6 HOH A 116 616 70 HOH HOH . F 6 HOH A 117 617 90 HOH HOH . F 6 HOH A 118 618 107 HOH HOH . F 6 HOH A 119 619 139 HOH HOH . F 6 HOH A 120 620 52 HOH HOH . F 6 HOH A 121 621 147 HOH HOH . F 6 HOH A 122 622 74 HOH HOH . F 6 HOH A 123 623 25 HOH HOH . F 6 HOH A 124 624 131 HOH HOH . F 6 HOH A 125 625 132 HOH HOH . F 6 HOH A 126 626 152 HOH HOH . F 6 HOH A 127 627 50 HOH HOH . F 6 HOH A 128 628 142 HOH HOH . F 6 HOH A 129 629 134 HOH HOH . F 6 HOH A 130 630 112 HOH HOH . F 6 HOH A 131 631 133 HOH HOH . F 6 HOH A 132 632 119 HOH HOH . F 6 HOH A 133 633 118 HOH HOH . F 6 HOH A 134 634 117 HOH HOH . F 6 HOH A 135 635 81 HOH HOH . F 6 HOH A 136 636 6 HOH HOH . F 6 HOH A 137 637 138 HOH HOH . F 6 HOH A 138 638 135 HOH HOH . F 6 HOH A 139 639 137 HOH HOH . F 6 HOH A 140 640 85 HOH HOH . F 6 HOH A 141 641 64 HOH HOH . F 6 HOH A 142 642 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . D 4 -13.429 1.069 -33.511 1 6.93 ? BE BEF 403 A 1 HETATM 2 F F1 BEF . . . D 4 -14.052 0.058 -34.355 1 7.14 ? F1 BEF 403 A 1 HETATM 3 F F2 BEF . . . D 4 -13.595 2.458 -33.91 1 6.91 ? F2 BEF 403 A 1 HETATM 4 F F3 BEF . . . D 4 -13.512 0.837 -32.066 1 7 ? F3 BEF 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #