data_6JUH
#
_model_server_result.job_id            eKQ5vyusuKr3LiQEnltkKA 
_model_server_result.datetime_utc      '2024-11-25 16:05:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6juh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1301}' 
#
_entry.id    6JUH 
#
_exptl.entry_id    6JUH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              631.655 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[phenyl-(phenylmethyl)amino]ethyl (4~{R})-5-(5,5-dimethyl-2-oxidanylidene-1,3,2$l^{5}-dioxaphosphinan-2-yl)-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3-carboxylate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JUH 
_cell.length_a            124.86 
_cell.length_b            125.52 
_cell.length_c            191.42 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JUH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H38 N3 O7 P' 
_chem_comp.formula_weight    631.655 
_chem_comp.id                C9X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[phenyl-(phenylmethyl)amino]ethyl (4~{R})-5-(5,5-dimethyl-2-oxidanylidene-1,3,2$l^{5}-dioxaphosphinan-2-yl)-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O28 C27 C9X doub 70 n n 
O29 C30 C9X sing 71 n n 
O29 C27 C9X sing 72 n n 
C30 C31 C9X sing 73 n n 
C27 C06 C9X sing 74 n n 
C20 C21 C9X doub 75 n y 
C20 C19 C9X sing 76 n y 
C21 C22 C9X sing 77 n y 
C35 C36 C9X doub 78 n y 
C35 C34 C9X sing 79 n y 
C36 C37 C9X sing 80 n y 
C19 C18 C9X doub 81 n y 
C05 C04 C9X sing 82 n n 
C31 N32 C9X sing 83 n n 
C33 C34 C9X sing 84 n n 
C33 N32 C9X sing 85 n n 
C34 C39 C9X doub 86 n y 
O26 N24 C9X sing 87 n n 
N32 C40 C9X sing 88 n n 
C22 N24 C9X sing 89 n n 
C22 C23 C9X doub 90 n y 
C06 C04 C9X doub 91 n n 
C06 C07 C9X sing 92 n n 
C37 C38 C9X doub 93 n y 
C45 C44 C9X doub 94 n y 
C45 C40 C9X sing 95 n y 
C18 C23 C9X sing 96 n y 
C18 C07 C9X sing 97 n n 
N24 O25 C9X doub 98 n n 
C44 C43 C9X sing 99 n y 
C40 C41 C9X doub 100 n y 
C04 N03 C9X sing 101 n n 
C39 C38 C9X sing 102 n y 
C43 C42 C9X doub 103 n y 
C07 C08 C9X sing 104 n n 
C41 C42 C9X sing 105 n y 
N03 C02 C9X sing 106 n n 
C08 C02 C9X doub 107 n n 
C08 P09 C9X sing 108 n n 
C02 C01 C9X sing 109 n n 
O11 P09 C9X sing 110 n n 
O11 C12 C9X sing 111 n n 
C14 C13 C9X sing 112 n n 
P09 O17 C9X sing 113 n n 
P09 O10 C9X doub 114 n n 
C12 C13 C9X sing 115 n n 
O17 C16 C9X sing 116 n n 
C13 C16 C9X sing 117 n n 
C13 C15 C9X sing 118 n n 
C12 H1 C9X sing 119 n n 
C12 H2 C9X sing 120 n n 
C36 H3 C9X sing 121 n n 
C35 H4 C9X sing 122 n n 
C33 H5 C9X sing 123 n n 
C33 H6 C9X sing 124 n n 
C31 H7 C9X sing 125 n n 
C31 H8 C9X sing 126 n n 
C30 H9 C9X sing 127 n n 
C30 H10 C9X sing 128 n n 
C23 H11 C9X sing 129 n n 
C21 H12 C9X sing 130 n n 
C20 H13 C9X sing 131 n n 
C19 H14 C9X sing 132 n n 
C16 H15 C9X sing 133 n n 
C16 H16 C9X sing 134 n n 
C15 H17 C9X sing 135 n n 
C15 H18 C9X sing 136 n n 
C15 H19 C9X sing 137 n n 
C01 H20 C9X sing 138 n n 
C01 H21 C9X sing 139 n n 
C01 H22 C9X sing 140 n n 
N03 H24 C9X sing 141 n n 
C05 H25 C9X sing 142 n n 
C05 H26 C9X sing 143 n n 
C05 H27 C9X sing 144 n n 
C07 H28 C9X sing 145 n n 
C14 H30 C9X sing 146 n n 
C14 H31 C9X sing 147 n n 
C14 H32 C9X sing 148 n n 
C37 H33 C9X sing 149 n n 
C38 H34 C9X sing 150 n n 
C39 H35 C9X sing 151 n n 
C41 H36 C9X sing 152 n n 
C42 H37 C9X sing 153 n n 
C43 H38 C9X sing 154 n n 
C44 H39 C9X sing 155 n n 
C45 H40 C9X sing 156 n n 
#
_atom_sites.entry_id                     6JUH 
_atom_sites.fract_transf_matrix[1][1]    0.008009 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007967 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005224 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MC3 A 1 1301 1309 MC3 PX5 . 
F 3 PX4 A 1 1302 1303 PX4 PX6 . 
G 4 G3P A 1 1303 1305 G3P PX7 . 
H 5 CA B 1 1301 2 CA CA . 
I 2 MC3 B 1 1302 1310 MC3 PX5 . 
J 3 PX4 B 1 1303 1304 PX4 PX6 . 
K 5 CA C 1 1301 1 CA CA . 
L 2 MC3 C 1 1302 1308 MC3 PX5 . 
M 3 PX4 C 1 1303 1302 PX4 PX6 . 
N 3 PX4 C 1 1304 1305 PX4 PX6 . 
O 4 G3P C 1 1305 1306 G3P PX7 . 
P 4 G3P C 1 1306 1308 G3P PX7 . 
Q 6 C9X D 1 1301 8 C9X EFO . 
R 2 MC3 D 1 1302 1311 MC3 PX5 . 
S 4 G3P D 1 1303 1307 G3P PX7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 C9X . . . Q 6 -5.252 31.273 27.76 1 97.8 ? C12 C9X 1301 D 1 
HETATM 2 C C36 C9X . . . Q 6 -9.442 33.056 23.295 1 58.81 ? C36 C9X 1301 D 1 
HETATM 3 C C35 C9X . . . Q 6 -8.205 33.755 23.228 1 60.85 ? C35 C9X 1301 D 1 
HETATM 4 C C34 C9X . . . Q 6 -6.967 33.26 23.737 1 63.38 ? C34 C9X 1301 D 1 
HETATM 5 C C33 C9X . . . Q 6 -5.604 34.201 23.626 1 70.61 ? C33 C9X 1301 D 1 
HETATM 6 C C31 C9X . . . Q 6 -3.839 32.235 23.553 1 72.69 ? C31 C9X 1301 D 1 
HETATM 7 C C30 C9X . . . Q 6 -3.115 31.896 22.162 1 63.99 ? C30 C9X 1301 D 1 
HETATM 8 O O28 C9X . . . Q 6 -0.438 30.735 22.127 1 100.65 ? O28 C9X 1301 D 1 
HETATM 9 C C27 C9X . . . Q 6 -1.392 30.192 22.66 1 93.45 ? C27 C9X 1301 D 1 
HETATM 10 O O26 C9X . . . Q 6 -4.285 23.341 23.802 1 70.19 ? O26 C9X 1301 D 1 
HETATM 11 O O25 C9X . . . Q 6 -2.566 24.11 24.706 1 108.91 ? O25 C9X 1301 D 1 
HETATM 12 C C23 C9X . . . Q 6 -3.216 26.771 24.322 1 112.65 ? C23 C9X 1301 D 1 
HETATM 13 C C22 C9X . . . Q 6 -4.032 25.774 23.851 1 109.33 ? C22 C9X 1301 D 1 
HETATM 14 C C21 C9X . . . Q 6 -5.187 26.142 23.093 1 114.78 ? C21 C9X 1301 D 1 
HETATM 15 C C20 C9X . . . Q 6 -5.473 27.535 22.853 1 108.57 ? C20 C9X 1301 D 1 
HETATM 16 C C19 C9X . . . Q 6 -4.637 28.58 23.326 1 99.94 ? C19 C9X 1301 D 1 
HETATM 17 C C18 C9X . . . Q 6 -3.514 28.183 24.074 1 112.94 ? C18 C9X 1301 D 1 
HETATM 18 C C16 C9X . . . Q 6 -3.039 31.659 29.053 1 114.18 ? C16 C9X 1301 D 1 
HETATM 19 C C15 C9X . . . Q 6 -4.977 33.286 29.318 1 112.58 ? C15 C9X 1301 D 1 
HETATM 20 C C13 C9X . . . Q 6 -4.225 32.364 28.302 1 110.33 ? C13 C9X 1301 D 1 
HETATM 21 C C01 C9X . . . Q 6 -0.983 27.416 28.125 1 110.76 ? C01 C9X 1301 D 1 
HETATM 22 C C02 C9X . . . Q 6 -1.088 27.774 26.584 1 111.23 ? C02 C9X 1301 D 1 
HETATM 23 N N03 C9X . . . Q 6 -0.398 27.348 25.53 1 97.09 ? N03 C9X 1301 D 1 
HETATM 24 C C04 C9X . . . Q 6 -0.214 28.257 24.278 1 83.57 ? C04 C9X 1301 D 1 
HETATM 25 C C05 C9X . . . Q 6 1.143 28.152 23.532 1 63.04 ? C05 C9X 1301 D 1 
HETATM 26 C C06 C9X . . . Q 6 -1.231 29.147 23.865 1 101.46 ? C06 C9X 1301 D 1 
HETATM 27 C C07 C9X . . . Q 6 -2.524 29.145 24.716 1 114.61 ? C07 C9X 1301 D 1 
HETATM 28 C C08 C9X . . . Q 6 -2.417 28.541 26.256 1 115.32 ? C08 C9X 1301 D 1 
HETATM 29 P P09 C9X . . . Q 6 -3.315 29.414 27.614 1 108.53 ? P09 C9X 1301 D 1 
HETATM 30 O O10 C9X . . . Q 6 -3.702 28.396 28.644 1 106.41 ? O10 C9X 1301 D 1 
HETATM 31 O O11 C9X . . . Q 6 -4.579 30.332 26.983 1 95.88 ? O11 C9X 1301 D 1 
HETATM 32 C C14 C9X . . . Q 6 -3.663 33.236 27.134 1 108.9 ? C14 C9X 1301 D 1 
HETATM 33 O O17 C9X . . . Q 6 -2.433 30.634 28.257 1 115.19 ? O17 C9X 1301 D 1 
HETATM 34 N N24 C9X . . . Q 6 -3.625 24.293 24.137 1 95.44 ? N24 C9X 1301 D 1 
HETATM 35 O O29 C9X . . . Q 6 -2.62 30.556 22.129 1 71.89 ? O29 C9X 1301 D 1 
HETATM 36 N N32 C9X . . . Q 6 -4.126 33.672 23.826 1 83.15 ? N32 C9X 1301 D 1 
HETATM 37 C C37 C9X . . . Q 6 -9.485 31.813 23.889 1 62.62 ? C37 C9X 1301 D 1 
HETATM 38 C C38 C9X . . . Q 6 -8.287 31.29 24.419 1 58.72 ? C38 C9X 1301 D 1 
HETATM 39 C C39 C9X . . . Q 6 -7.066 32.004 24.338 1 57.02 ? C39 C9X 1301 D 1 
HETATM 40 C C40 C9X . . . Q 6 -2.897 34.63 24.176 1 96.59 ? C40 C9X 1301 D 1 
HETATM 41 C C41 C9X . . . Q 6 -3.038 35.948 24.742 1 83.58 ? C41 C9X 1301 D 1 
HETATM 42 C C42 C9X . . . Q 6 -1.908 36.816 24.971 1 63.15 ? C42 C9X 1301 D 1 
HETATM 43 C C43 C9X . . . Q 6 -0.578 36.427 24.683 1 56.73 ? C43 C9X 1301 D 1 
HETATM 44 C C44 C9X . . . Q 6 -0.373 35.145 24.149 1 72.27 ? C44 C9X 1301 D 1 
HETATM 45 C C45 C9X . . . Q 6 -1.488 34.275 23.889 1 93.74 ? C45 C9X 1301 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           45 
#