data_6JUH # _model_server_result.job_id wYcX7mwwmQrd48C3PktdBA _model_server_result.datetime_utc '2024-11-22 11:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6juh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1303}' # _entry.id 6JUH # _exptl.entry_id 6JUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.074 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SN-GLYCEROL-3-PHOSPHATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JUH _cell.length_a 124.86 _cell.length_b 125.52 _cell.length_c 191.42 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 O N N ? 4 P N N ? 4 S N N # _chem_comp.formula 'C3 H9 O6 P' _chem_comp.formula_weight 172.074 _chem_comp.id G3P _chem_comp.mon_nstd_flag . _chem_comp.name SN-GLYCEROL-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3P sing 157 n n C1 C2 G3P sing 158 n n C2 O2 G3P sing 159 n n C2 C3 G3P sing 160 n n C3 O1P G3P sing 161 n n O1P P G3P sing 162 n n O4P P G3P sing 163 n n O2P P G3P doub 164 n n O3P P G3P sing 165 n n O1 HO1 G3P sing 166 n n C1 H11 G3P sing 167 n n C1 H12 G3P sing 168 n n C2 H2 G3P sing 169 n n O2 HO2 G3P sing 170 n n C3 H31 G3P sing 171 n n C3 H32 G3P sing 172 n n O3P HOP3 G3P sing 173 n n O4P HOP4 G3P sing 174 n n # _atom_sites.entry_id 6JUH _atom_sites.fract_transf_matrix[1][1] 0.008009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MC3 A 1 1301 1309 MC3 PX5 . F 3 PX4 A 1 1302 1303 PX4 PX6 . G 4 G3P A 1 1303 1305 G3P PX7 . H 5 CA B 1 1301 2 CA CA . I 2 MC3 B 1 1302 1310 MC3 PX5 . J 3 PX4 B 1 1303 1304 PX4 PX6 . K 5 CA C 1 1301 1 CA CA . L 2 MC3 C 1 1302 1308 MC3 PX5 . M 3 PX4 C 1 1303 1302 PX4 PX6 . N 3 PX4 C 1 1304 1305 PX4 PX6 . O 4 G3P C 1 1305 1306 G3P PX7 . P 4 G3P C 1 1306 1308 G3P PX7 . Q 6 C9X D 1 1301 8 C9X EFO . R 2 MC3 D 1 1302 1311 MC3 PX5 . S 4 G3P D 1 1303 1307 G3P PX7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3P . . . G 4 25.022 16.578 15.159 1 98.89 ? O1 G3P 1303 A 1 HETATM 2 C C1 G3P . . . G 4 25.263 17.895 14.755 1 95.85 ? C1 G3P 1303 A 1 HETATM 3 C C2 G3P . . . G 4 24.238 18.311 13.692 1 94.6 ? C2 G3P 1303 A 1 HETATM 4 O O2 G3P . . . G 4 23.636 19.54 14.072 1 89.71 ? O2 G3P 1303 A 1 HETATM 5 C C3 G3P . . . G 4 24.943 18.459 12.335 1 102.25 ? C3 G3P 1303 A 1 HETATM 6 O O1P G3P . . . G 4 24.962 17.24 11.624 1 111.97 ? O1P G3P 1303 A 1 HETATM 7 O O4P G3P . . . G 4 26.021 18.466 9.505 1 135.14 -1 O4P G3P 1303 A 1 HETATM 8 O O2P G3P . . . G 4 25.363 16.123 9.253 1 126.07 -1 O2P G3P 1303 A 1 HETATM 9 O O3P G3P . . . G 4 27.281 16.704 10.621 1 134.1 ? O3P G3P 1303 A 1 HETATM 10 P P G3P . . . G 4 25.891 17.14 10.237 1 127.06 ? P G3P 1303 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 10 #