data_6JUH # _model_server_result.job_id EjLrLopDIw7nJxVI066BKg _model_server_result.datetime_utc '2024-11-25 16:13:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6juh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1303}' # _entry.id 6JUH # _exptl.entry_id 6JUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JUH _cell.length_a 124.86 _cell.length_b 125.52 _cell.length_c 191.42 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 M N N ? 3 N N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 484 n n O1 H1P PX4 sing 485 n n O2 P1 PX4 doub 486 n n P1 O3 PX4 sing 487 n n P1 O4 PX4 sing 488 n n O3 C1 PX4 sing 489 n n C1 C2 PX4 sing 490 n n C1 H1 PX4 sing 491 n n C1 H2 PX4 sing 492 n n C2 N1 PX4 sing 493 n n C2 H3 PX4 sing 494 n n C2 H4 PX4 sing 495 n n N1 C3 PX4 sing 496 n n N1 C4 PX4 sing 497 n n N1 C5 PX4 sing 498 n n C3 H5 PX4 sing 499 n n C3 H6 PX4 sing 500 n n C3 H7 PX4 sing 501 n n C4 H8 PX4 sing 502 n n C4 H9 PX4 sing 503 n n C4 H10 PX4 sing 504 n n C5 H11 PX4 sing 505 n n C5 H12 PX4 sing 506 n n C5 H13 PX4 sing 507 n n O4 C6 PX4 sing 508 n n C6 C7 PX4 sing 509 n n C6 H14 PX4 sing 510 n n C6 H15 PX4 sing 511 n n C7 C8 PX4 sing 512 n n C7 O7 PX4 sing 513 n n C7 H16 PX4 sing 514 n n C8 O5 PX4 sing 515 n n C8 H17 PX4 sing 516 n n C8 H18 PX4 sing 517 n n O5 C9 PX4 sing 518 n n C9 O6 PX4 doub 519 n n C9 C10 PX4 sing 520 n n C10 C11 PX4 sing 521 n n C10 H19 PX4 sing 522 n n C10 H20 PX4 sing 523 n n C11 C12 PX4 sing 524 n n C11 H21 PX4 sing 525 n n C11 H22 PX4 sing 526 n n C12 C13 PX4 sing 527 n n C12 H23 PX4 sing 528 n n C12 H24 PX4 sing 529 n n C13 C14 PX4 sing 530 n n C13 H25 PX4 sing 531 n n C13 H26 PX4 sing 532 n n C14 C15 PX4 sing 533 n n C14 H27 PX4 sing 534 n n C14 H28 PX4 sing 535 n n C15 C16 PX4 sing 536 n n C15 H29 PX4 sing 537 n n C15 H30 PX4 sing 538 n n C16 C17 PX4 sing 539 n n C16 H31 PX4 sing 540 n n C16 H32 PX4 sing 541 n n C17 C18 PX4 sing 542 n n C17 H33 PX4 sing 543 n n C17 H34 PX4 sing 544 n n C18 C19 PX4 sing 545 n n C18 H35 PX4 sing 546 n n C18 H36 PX4 sing 547 n n C19 C20 PX4 sing 548 n n C19 H37 PX4 sing 549 n n C19 H38 PX4 sing 550 n n C20 C21 PX4 sing 551 n n C20 H39 PX4 sing 552 n n C20 H40 PX4 sing 553 n n C21 C22 PX4 sing 554 n n C21 H41 PX4 sing 555 n n C21 H42 PX4 sing 556 n n C22 H43 PX4 sing 557 n n C22 H44 PX4 sing 558 n n C22 H45 PX4 sing 559 n n O7 C23 PX4 sing 560 n n C23 O8 PX4 doub 561 n n C23 C24 PX4 sing 562 n n C24 C25 PX4 sing 563 n n C24 H46 PX4 sing 564 n n C24 H47 PX4 sing 565 n n C25 C26 PX4 sing 566 n n C25 H48 PX4 sing 567 n n C25 H49 PX4 sing 568 n n C26 C27 PX4 sing 569 n n C26 H50 PX4 sing 570 n n C26 H51 PX4 sing 571 n n C27 C28 PX4 sing 572 n n C27 H52 PX4 sing 573 n n C27 H53 PX4 sing 574 n n C28 C29 PX4 sing 575 n n C28 H54 PX4 sing 576 n n C28 H55 PX4 sing 577 n n C29 C30 PX4 sing 578 n n C29 H56 PX4 sing 579 n n C29 H57 PX4 sing 580 n n C30 C31 PX4 sing 581 n n C30 H58 PX4 sing 582 n n C30 H59 PX4 sing 583 n n C31 C32 PX4 sing 584 n n C31 H60 PX4 sing 585 n n C31 H61 PX4 sing 586 n n C32 C33 PX4 sing 587 n n C32 H62 PX4 sing 588 n n C32 H63 PX4 sing 589 n n C33 C34 PX4 sing 590 n n C33 H64 PX4 sing 591 n n C33 H65 PX4 sing 592 n n C34 C35 PX4 sing 593 n n C34 H66 PX4 sing 594 n n C34 H67 PX4 sing 595 n n C35 C36 PX4 sing 596 n n C35 H68 PX4 sing 597 n n C35 H69 PX4 sing 598 n n C36 H70 PX4 sing 599 n n C36 H71 PX4 sing 600 n n C36 H72 PX4 sing 601 n n # _atom_sites.entry_id 6JUH _atom_sites.fract_transf_matrix[1][1] 0.008009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MC3 A 1 1301 1309 MC3 PX5 . F 3 PX4 A 1 1302 1303 PX4 PX6 . G 4 G3P A 1 1303 1305 G3P PX7 . H 5 CA B 1 1301 2 CA CA . I 2 MC3 B 1 1302 1310 MC3 PX5 . J 3 PX4 B 1 1303 1304 PX4 PX6 . K 5 CA C 1 1301 1 CA CA . L 2 MC3 C 1 1302 1308 MC3 PX5 . M 3 PX4 C 1 1303 1302 PX4 PX6 . N 3 PX4 C 1 1304 1305 PX4 PX6 . O 4 G3P C 1 1305 1306 G3P PX7 . P 4 G3P C 1 1306 1308 G3P PX7 . Q 6 C9X D 1 1301 8 C9X EFO . R 2 MC3 D 1 1302 1311 MC3 PX5 . S 4 G3P D 1 1303 1307 G3P PX7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . J 3 6.114 3.291 7.009 1 108.02 ? O1 PX4 1303 B 1 HETATM 2 O O2 PX4 . . . J 3 6.212 5.429 5.796 1 106.5 ? O2 PX4 1303 B 1 HETATM 3 P P1 PX4 . . . J 3 5.806 4.769 7.111 1 111.2 ? P1 PX4 1303 B 1 HETATM 4 O O3 PX4 . . . J 3 4.321 5.011 7.353 1 126.65 ? O3 PX4 1303 B 1 HETATM 5 O O4 PX4 . . . J 3 6.682 5.338 8.4 1 93.79 ? O4 PX4 1303 B 1 HETATM 6 C C6 PX4 . . . J 3 6.26 6.451 9.136 1 80.43 ? C6 PX4 1303 B 1 HETATM 7 C C7 PX4 . . . J 3 6.36 6.053 10.598 1 68.96 ? C7 PX4 1303 B 1 HETATM 8 C C8 PX4 . . . J 3 6.007 7.274 11.509 1 59.6 ? C8 PX4 1303 B 1 HETATM 9 O O5 PX4 . . . J 3 5.11 8.216 10.973 1 50.63 ? O5 PX4 1303 B 1 HETATM 10 O O7 PX4 . . . J 3 5.569 4.873 10.821 1 62.81 ? O7 PX4 1303 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #