data_6JV0
#
_model_server_result.job_id            lLju7uuKrA2F5iq6MxeQZQ 
_model_server_result.datetime_utc      '2025-01-10 07:58:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jv0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6JV0 
#
_exptl.entry_id    6JV0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              132.161 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-ornithine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.08 
_cell.angle_gamma         90 
_cell.entry_id            6JV0 
_cell.length_a            40.468 
_cell.length_b            87.746 
_cell.length_c            43.31 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JV0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H12 N2 O2' 
_chem_comp.formula_weight    132.161 
_chem_comp.id                ORN 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              L-ornithine 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ORN sing 246 n n 
N H ORN sing 247 n n 
N H2 ORN sing 248 n n 
CA CB ORN sing 249 n n 
CA C ORN sing 250 n n 
CA HA ORN sing 251 n n 
CB CG ORN sing 252 n n 
CB HB2 ORN sing 253 n n 
CB HB3 ORN sing 254 n n 
CG CD ORN sing 255 n n 
CG HG2 ORN sing 256 n n 
CG HG3 ORN sing 257 n n 
CD NE ORN sing 258 n n 
CD HD2 ORN sing 259 n n 
CD HD3 ORN sing 260 n n 
NE HE1 ORN sing 261 n n 
NE HE2 ORN sing 262 n n 
C O ORN doub 263 n n 
C OXT ORN sing 264 n n 
OXT HXT ORN sing 265 n n 
#
_atom_sites.entry_id                     6JV0 
_atom_sites.fract_transf_matrix[1][1]    0.024711 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001763 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011397 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023148 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ORN A 1 301 1 ORN ORN . 
C 3 EDO A 1 302 1 EDO EDO . 
D 3 EDO A 1 303 2 EDO EDO . 
E 3 EDO A 1 304 3 EDO EDO . 
F 3 EDO A 1 305 4 EDO EDO . 
G 3 EDO A 1 306 5 EDO EDO . 
H 3 EDO A 1 307 6 EDO EDO . 
I 3 EDO A 1 308 7 EDO EDO . 
J 3 EDO A 1 309 8 EDO EDO . 
K 3 EDO A 1 310 9 EDO EDO . 
L 3 EDO A 1 311 10 EDO EDO . 
M 3 EDO A 1 312 11 EDO EDO . 
N 3 EDO A 1 313 12 EDO EDO . 
O 3 EDO A 1 314 13 EDO EDO . 
P 3 EDO A 1 315 16 EDO EDO . 
Q 3 EDO A 1 316 17 EDO EDO . 
R 3 EDO A 1 317 18 EDO EDO . 
S 3 EDO A 1 318 19 EDO EDO . 
T 4 HOH A 1 401 247 HOH HOH . 
T 4 HOH A 2 402 149 HOH HOH . 
T 4 HOH A 3 403 219 HOH HOH . 
T 4 HOH A 4 404 215 HOH HOH . 
T 4 HOH A 5 405 205 HOH HOH . 
T 4 HOH A 6 406 230 HOH HOH . 
T 4 HOH A 7 407 96 HOH HOH . 
T 4 HOH A 8 408 72 HOH HOH . 
T 4 HOH A 9 409 206 HOH HOH . 
T 4 HOH A 10 410 112 HOH HOH . 
T 4 HOH A 11 411 227 HOH HOH . 
T 4 HOH A 12 412 58 HOH HOH . 
T 4 HOH A 13 413 200 HOH HOH . 
T 4 HOH A 14 414 83 HOH HOH . 
T 4 HOH A 15 415 146 HOH HOH . 
T 4 HOH A 16 416 232 HOH HOH . 
T 4 HOH A 17 417 156 HOH HOH . 
T 4 HOH A 18 418 12 HOH HOH . 
T 4 HOH A 19 419 165 HOH HOH . 
T 4 HOH A 20 420 99 HOH HOH . 
T 4 HOH A 21 421 87 HOH HOH . 
T 4 HOH A 22 422 48 HOH HOH . 
T 4 HOH A 23 423 176 HOH HOH . 
T 4 HOH A 24 424 111 HOH HOH . 
T 4 HOH A 25 425 78 HOH HOH . 
T 4 HOH A 26 426 103 HOH HOH . 
T 4 HOH A 27 427 124 HOH HOH . 
T 4 HOH A 28 428 34 HOH HOH . 
T 4 HOH A 29 429 148 HOH HOH . 
T 4 HOH A 30 430 118 HOH HOH . 
T 4 HOH A 31 431 22 HOH HOH . 
T 4 HOH A 32 432 228 HOH HOH . 
T 4 HOH A 33 433 241 HOH HOH . 
T 4 HOH A 34 434 18 HOH HOH . 
T 4 HOH A 35 435 243 HOH HOH . 
T 4 HOH A 36 436 30 HOH HOH . 
T 4 HOH A 37 437 231 HOH HOH . 
T 4 HOH A 38 438 151 HOH HOH . 
T 4 HOH A 39 439 55 HOH HOH . 
T 4 HOH A 40 440 174 HOH HOH . 
T 4 HOH A 41 441 207 HOH HOH . 
T 4 HOH A 42 442 37 HOH HOH . 
T 4 HOH A 43 443 81 HOH HOH . 
T 4 HOH A 44 444 172 HOH HOH . 
T 4 HOH A 45 445 44 HOH HOH . 
T 4 HOH A 46 446 100 HOH HOH . 
T 4 HOH A 47 447 169 HOH HOH . 
T 4 HOH A 48 448 79 HOH HOH . 
T 4 HOH A 49 449 117 HOH HOH . 
T 4 HOH A 50 450 186 HOH HOH . 
T 4 HOH A 51 451 195 HOH HOH . 
T 4 HOH A 52 452 8 HOH HOH . 
T 4 HOH A 53 453 36 HOH HOH . 
T 4 HOH A 54 454 53 HOH HOH . 
T 4 HOH A 55 455 10 HOH HOH . 
T 4 HOH A 56 456 166 HOH HOH . 
T 4 HOH A 57 457 229 HOH HOH . 
T 4 HOH A 58 458 15 HOH HOH . 
T 4 HOH A 59 459 193 HOH HOH . 
T 4 HOH A 60 460 73 HOH HOH . 
T 4 HOH A 61 461 38 HOH HOH . 
T 4 HOH A 62 462 51 HOH HOH . 
T 4 HOH A 63 463 255 HOH HOH . 
T 4 HOH A 64 464 14 HOH HOH . 
T 4 HOH A 65 465 122 HOH HOH . 
T 4 HOH A 66 466 216 HOH HOH . 
T 4 HOH A 67 467 69 HOH HOH . 
T 4 HOH A 68 468 50 HOH HOH . 
T 4 HOH A 69 469 61 HOH HOH . 
T 4 HOH A 70 470 168 HOH HOH . 
T 4 HOH A 71 471 2 HOH HOH . 
T 4 HOH A 72 472 4 HOH HOH . 
T 4 HOH A 73 473 24 HOH HOH . 
T 4 HOH A 74 474 28 HOH HOH . 
T 4 HOH A 75 475 6 HOH HOH . 
T 4 HOH A 76 476 1 HOH HOH . 
T 4 HOH A 77 477 115 HOH HOH . 
T 4 HOH A 78 478 41 HOH HOH . 
T 4 HOH A 79 479 183 HOH HOH . 
T 4 HOH A 80 480 150 HOH HOH . 
T 4 HOH A 81 481 35 HOH HOH . 
T 4 HOH A 82 482 129 HOH HOH . 
T 4 HOH A 83 483 19 HOH HOH . 
T 4 HOH A 84 484 60 HOH HOH . 
T 4 HOH A 85 485 23 HOH HOH . 
T 4 HOH A 86 486 223 HOH HOH . 
T 4 HOH A 87 487 46 HOH HOH . 
T 4 HOH A 88 488 121 HOH HOH . 
T 4 HOH A 89 489 185 HOH HOH . 
T 4 HOH A 90 490 167 HOH HOH . 
T 4 HOH A 91 491 74 HOH HOH . 
T 4 HOH A 92 492 49 HOH HOH . 
T 4 HOH A 93 493 91 HOH HOH . 
T 4 HOH A 94 494 102 HOH HOH . 
T 4 HOH A 95 495 9 HOH HOH . 
T 4 HOH A 96 496 71 HOH HOH . 
T 4 HOH A 97 497 125 HOH HOH . 
T 4 HOH A 98 498 138 HOH HOH . 
T 4 HOH A 99 499 67 HOH HOH . 
T 4 HOH A 100 500 32 HOH HOH . 
T 4 HOH A 101 501 42 HOH HOH . 
T 4 HOH A 102 502 45 HOH HOH . 
T 4 HOH A 103 503 11 HOH HOH . 
T 4 HOH A 104 504 140 HOH HOH . 
T 4 HOH A 105 505 3 HOH HOH . 
T 4 HOH A 106 506 47 HOH HOH . 
T 4 HOH A 107 507 90 HOH HOH . 
T 4 HOH A 108 508 155 HOH HOH . 
T 4 HOH A 109 509 7 HOH HOH . 
T 4 HOH A 110 510 52 HOH HOH . 
T 4 HOH A 111 511 64 HOH HOH . 
T 4 HOH A 112 512 5 HOH HOH . 
T 4 HOH A 113 513 127 HOH HOH . 
T 4 HOH A 114 514 170 HOH HOH . 
T 4 HOH A 115 515 184 HOH HOH . 
T 4 HOH A 116 516 13 HOH HOH . 
T 4 HOH A 117 517 21 HOH HOH . 
T 4 HOH A 118 518 76 HOH HOH . 
T 4 HOH A 119 519 132 HOH HOH . 
T 4 HOH A 120 520 145 HOH HOH . 
T 4 HOH A 121 521 97 HOH HOH . 
T 4 HOH A 122 522 54 HOH HOH . 
T 4 HOH A 123 523 89 HOH HOH . 
T 4 HOH A 124 524 109 HOH HOH . 
T 4 HOH A 125 525 25 HOH HOH . 
T 4 HOH A 126 526 75 HOH HOH . 
T 4 HOH A 127 527 20 HOH HOH . 
T 4 HOH A 128 528 191 HOH HOH . 
T 4 HOH A 129 529 160 HOH HOH . 
T 4 HOH A 130 530 43 HOH HOH . 
T 4 HOH A 131 531 197 HOH HOH . 
T 4 HOH A 132 532 126 HOH HOH . 
T 4 HOH A 133 533 16 HOH HOH . 
T 4 HOH A 134 534 29 HOH HOH . 
T 4 HOH A 135 535 62 HOH HOH . 
T 4 HOH A 136 536 98 HOH HOH . 
T 4 HOH A 137 537 225 HOH HOH . 
T 4 HOH A 138 538 26 HOH HOH . 
T 4 HOH A 139 539 130 HOH HOH . 
T 4 HOH A 140 540 239 HOH HOH . 
T 4 HOH A 141 541 154 HOH HOH . 
T 4 HOH A 142 542 63 HOH HOH . 
T 4 HOH A 143 543 17 HOH HOH . 
T 4 HOH A 144 544 80 HOH HOH . 
T 4 HOH A 145 545 164 HOH HOH . 
T 4 HOH A 146 546 123 HOH HOH . 
T 4 HOH A 147 547 77 HOH HOH . 
T 4 HOH A 148 548 116 HOH HOH . 
T 4 HOH A 149 549 59 HOH HOH . 
T 4 HOH A 150 550 57 HOH HOH . 
T 4 HOH A 151 551 40 HOH HOH . 
T 4 HOH A 152 552 66 HOH HOH . 
T 4 HOH A 153 553 93 HOH HOH . 
T 4 HOH A 154 554 31 HOH HOH . 
T 4 HOH A 155 555 27 HOH HOH . 
T 4 HOH A 156 556 39 HOH HOH . 
T 4 HOH A 157 557 237 HOH HOH . 
T 4 HOH A 158 558 92 HOH HOH . 
T 4 HOH A 159 559 68 HOH HOH . 
T 4 HOH A 160 560 180 HOH HOH . 
T 4 HOH A 161 561 134 HOH HOH . 
T 4 HOH A 162 562 33 HOH HOH . 
T 4 HOH A 163 563 187 HOH HOH . 
T 4 HOH A 164 564 131 HOH HOH . 
T 4 HOH A 165 565 188 HOH HOH . 
T 4 HOH A 166 566 253 HOH HOH . 
T 4 HOH A 167 567 85 HOH HOH . 
T 4 HOH A 168 568 56 HOH HOH . 
T 4 HOH A 169 569 65 HOH HOH . 
T 4 HOH A 170 570 159 HOH HOH . 
T 4 HOH A 171 571 88 HOH HOH . 
T 4 HOH A 172 572 147 HOH HOH . 
T 4 HOH A 173 573 86 HOH HOH . 
T 4 HOH A 174 574 84 HOH HOH . 
T 4 HOH A 175 575 95 HOH HOH . 
T 4 HOH A 176 576 135 HOH HOH . 
T 4 HOH A 177 577 251 HOH HOH . 
T 4 HOH A 178 578 144 HOH HOH . 
T 4 HOH A 179 579 252 HOH HOH . 
T 4 HOH A 180 580 171 HOH HOH . 
T 4 HOH A 181 581 128 HOH HOH . 
T 4 HOH A 182 582 110 HOH HOH . 
T 4 HOH A 183 583 222 HOH HOH . 
T 4 HOH A 184 584 104 HOH HOH . 
T 4 HOH A 185 585 213 HOH HOH . 
T 4 HOH A 186 586 211 HOH HOH . 
T 4 HOH A 187 587 162 HOH HOH . 
T 4 HOH A 188 588 244 HOH HOH . 
T 4 HOH A 189 589 238 HOH HOH . 
T 4 HOH A 190 590 136 HOH HOH . 
T 4 HOH A 191 591 158 HOH HOH . 
T 4 HOH A 192 592 114 HOH HOH . 
T 4 HOH A 193 593 137 HOH HOH . 
T 4 HOH A 194 594 101 HOH HOH . 
T 4 HOH A 195 595 82 HOH HOH . 
T 4 HOH A 196 596 157 HOH HOH . 
T 4 HOH A 197 597 246 HOH HOH . 
T 4 HOH A 198 598 209 HOH HOH . 
T 4 HOH A 199 599 249 HOH HOH . 
T 4 HOH A 200 600 108 HOH HOH . 
T 4 HOH A 201 601 113 HOH HOH . 
T 4 HOH A 202 602 173 HOH HOH . 
T 4 HOH A 203 603 142 HOH HOH . 
T 4 HOH A 204 604 107 HOH HOH . 
T 4 HOH A 205 605 194 HOH HOH . 
T 4 HOH A 206 606 242 HOH HOH . 
T 4 HOH A 207 607 182 HOH HOH . 
T 4 HOH A 208 608 153 HOH HOH . 
T 4 HOH A 209 609 204 HOH HOH . 
T 4 HOH A 210 610 141 HOH HOH . 
T 4 HOH A 211 611 177 HOH HOH . 
T 4 HOH A 212 612 257 HOH HOH . 
T 4 HOH A 213 613 163 HOH HOH . 
T 4 HOH A 214 614 143 HOH HOH . 
T 4 HOH A 215 615 161 HOH HOH . 
T 4 HOH A 216 616 105 HOH HOH . 
T 4 HOH A 217 617 214 HOH HOH . 
T 4 HOH A 218 618 248 HOH HOH . 
T 4 HOH A 219 619 119 HOH HOH . 
T 4 HOH A 220 620 178 HOH HOH . 
T 4 HOH A 221 621 240 HOH HOH . 
T 4 HOH A 222 622 234 HOH HOH . 
T 4 HOH A 223 623 181 HOH HOH . 
T 4 HOH A 224 624 256 HOH HOH . 
T 4 HOH A 225 625 175 HOH HOH . 
T 4 HOH A 226 626 254 HOH HOH . 
T 4 HOH A 227 627 106 HOH HOH . 
T 4 HOH A 228 628 120 HOH HOH . 
T 4 HOH A 229 629 133 HOH HOH . 
T 4 HOH A 230 630 217 HOH HOH . 
T 4 HOH A 231 631 236 HOH HOH . 
T 4 HOH A 232 632 198 HOH HOH . 
T 4 HOH A 233 633 192 HOH HOH . 
T 4 HOH A 234 634 152 HOH HOH . 
T 4 HOH A 235 635 235 HOH HOH . 
T 4 HOH A 236 636 139 HOH HOH . 
T 4 HOH A 237 637 218 HOH HOH . 
T 4 HOH A 238 638 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ORN . . . B 2 5.547 -9.707 3.001 1 11.25 ? N ORN 301 A 1 
HETATM 2 C CA ORN . . . B 2 5.717 -8.604 3.943 1 10.27 ? CA ORN 301 A 1 
HETATM 3 C CB ORN . . . B 2 6.206 -7.322 3.269 1 10.31 ? CB ORN 301 A 1 
HETATM 4 C CG ORN . . . B 2 6.445 -6.2 4.25 1 11.3 ? CG ORN 301 A 1 
HETATM 5 C CD ORN . . . B 2 6.927 -4.943 3.536 1 12.92 ? CD ORN 301 A 1 
HETATM 6 N NE ORN . . . B 2 6.871 -3.732 4.329 1 14.58 ? NE ORN 301 A 1 
HETATM 7 C C ORN . . . B 2 4.38 -8.318 4.676 1 10.67 ? C ORN 301 A 1 
HETATM 8 O O ORN . . . B 2 3.338 -8.625 4.05 1 11.19 -1 O ORN 301 A 1 
HETATM 9 O OXT ORN . . . B 2 4.417 -7.823 5.834 1 10.51 ? OXT ORN 301 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#