data_6JVJ
#
_model_server_result.job_id            UVBvT2IgsRqj60BqTT9PQw 
_model_server_result.datetime_utc      '2024-11-20 07:37:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":200}' 
#
_entry.id    6JVJ 
#
_exptl.entry_id    6JVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              235.329 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-ethyl-N4-methyl-6-piperidin-1-yl-pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JVJ 
_cell.length_a            59.017 
_cell.length_b            67.491 
_cell.length_c            79.258 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C12 H21 N5' 
_chem_comp.formula_weight    235.329 
_chem_comp.id                C9L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-ethyl-N4-methyl-6-piperidin-1-yl-pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 C9L sing 70 n n 
C11 N10 C9L sing 71 n n 
C02 C03 C9L sing 72 n n 
N10 C09 C9L sing 73 n n 
C17 C16 C9L sing 74 n n 
C17 N12 C9L sing 75 n n 
C16 C15 C9L sing 76 n n 
C03 C09 C9L doub 77 n y 
C03 C04 C9L sing 78 n y 
C09 N08 C9L sing 79 n y 
C04 N12 C9L sing 80 n n 
C04 N05 C9L doub 81 n y 
N08 C06 C9L doub 82 n y 
N12 C13 C9L sing 83 n n 
C15 C14 C9L sing 84 n n 
N05 C06 C9L sing 85 n y 
C06 N07 C9L sing 86 n n 
C13 C14 C9L sing 87 n n 
C11 H1 C9L sing 88 n n 
C11 H2 C9L sing 89 n n 
C11 H3 C9L sing 90 n n 
C13 H4 C9L sing 91 n n 
C13 H5 C9L sing 92 n n 
C15 H6 C9L sing 93 n n 
C15 H7 C9L sing 94 n n 
C16 H8 C9L sing 95 n n 
C16 H9 C9L sing 96 n n 
C17 H10 C9L sing 97 n n 
C17 H11 C9L sing 98 n n 
C01 H12 C9L sing 99 n n 
C01 H13 C9L sing 100 n n 
C01 H14 C9L sing 101 n n 
C02 H15 C9L sing 102 n n 
C02 H16 C9L sing 103 n n 
N07 H17 C9L sing 104 n n 
N07 H18 C9L sing 105 n n 
N10 H19 C9L sing 106 n n 
C14 H20 C9L sing 107 n n 
C14 H21 C9L sing 108 n n 
#
_atom_sites.entry_id                     6JVJ 
_atom_sites.fract_transf_matrix[1][1]    0.016944 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C9L A 1 200 200 C9L EMD . 
D 2 C9L B 1 200 200 C9L EMD . 
E 3 HOH A 1 301 48 HOH HOH . 
E 3 HOH A 2 302 30 HOH HOH . 
E 3 HOH A 3 303 17 HOH HOH . 
E 3 HOH A 4 304 34 HOH HOH . 
E 3 HOH A 5 305 51 HOH HOH . 
E 3 HOH A 6 306 7 HOH HOH . 
E 3 HOH A 7 307 14 HOH HOH . 
E 3 HOH A 8 308 71 HOH HOH . 
E 3 HOH A 9 309 36 HOH HOH . 
E 3 HOH A 10 310 33 HOH HOH . 
E 3 HOH A 11 311 37 HOH HOH . 
E 3 HOH A 12 312 2 HOH HOH . 
E 3 HOH A 13 313 22 HOH HOH . 
E 3 HOH A 14 314 93 HOH HOH . 
E 3 HOH A 15 315 8 HOH HOH . 
E 3 HOH A 16 316 27 HOH HOH . 
E 3 HOH A 17 317 43 HOH HOH . 
E 3 HOH A 18 318 123 HOH HOH . 
E 3 HOH A 19 319 68 HOH HOH . 
E 3 HOH A 20 320 81 HOH HOH . 
E 3 HOH A 21 321 19 HOH HOH . 
E 3 HOH A 22 322 16 HOH HOH . 
E 3 HOH A 23 323 64 HOH HOH . 
E 3 HOH A 24 324 75 HOH HOH . 
E 3 HOH A 25 325 1 HOH HOH . 
E 3 HOH A 26 326 45 HOH HOH . 
E 3 HOH A 27 327 106 HOH HOH . 
E 3 HOH A 28 328 100 HOH HOH . 
E 3 HOH A 29 329 31 HOH HOH . 
E 3 HOH A 30 330 47 HOH HOH . 
E 3 HOH A 31 331 73 HOH HOH . 
E 3 HOH A 32 332 54 HOH HOH . 
E 3 HOH A 33 333 41 HOH HOH . 
E 3 HOH A 34 334 79 HOH HOH . 
E 3 HOH A 35 335 40 HOH HOH . 
E 3 HOH A 36 336 4 HOH HOH . 
E 3 HOH A 37 337 59 HOH HOH . 
E 3 HOH A 38 338 99 HOH HOH . 
E 3 HOH A 39 339 112 HOH HOH . 
E 3 HOH A 40 340 42 HOH HOH . 
E 3 HOH A 41 341 65 HOH HOH . 
E 3 HOH A 42 342 78 HOH HOH . 
E 3 HOH A 43 343 116 HOH HOH . 
E 3 HOH A 44 344 105 HOH HOH . 
E 3 HOH A 45 345 12 HOH HOH . 
E 3 HOH A 46 346 24 HOH HOH . 
E 3 HOH A 47 347 111 HOH HOH . 
E 3 HOH A 48 348 39 HOH HOH . 
E 3 HOH A 49 349 32 HOH HOH . 
E 3 HOH A 50 350 89 HOH HOH . 
E 3 HOH A 51 351 5 HOH HOH . 
E 3 HOH A 52 352 117 HOH HOH . 
E 3 HOH A 53 353 57 HOH HOH . 
E 3 HOH A 54 354 72 HOH HOH . 
E 3 HOH A 55 355 49 HOH HOH . 
E 3 HOH A 56 356 55 HOH HOH . 
E 3 HOH A 57 357 15 HOH HOH . 
E 3 HOH A 58 358 122 HOH HOH . 
E 3 HOH A 59 359 102 HOH HOH . 
E 3 HOH A 60 360 87 HOH HOH . 
E 3 HOH A 61 361 97 HOH HOH . 
E 3 HOH A 62 362 94 HOH HOH . 
E 3 HOH A 63 363 107 HOH HOH . 
E 3 HOH A 64 364 115 HOH HOH . 
E 3 HOH A 65 365 121 HOH HOH . 
F 3 HOH B 1 301 6 HOH HOH . 
F 3 HOH B 2 302 50 HOH HOH . 
F 3 HOH B 3 303 56 HOH HOH . 
F 3 HOH B 4 304 13 HOH HOH . 
F 3 HOH B 5 305 10 HOH HOH . 
F 3 HOH B 6 306 91 HOH HOH . 
F 3 HOH B 7 307 60 HOH HOH . 
F 3 HOH B 8 308 53 HOH HOH . 
F 3 HOH B 9 309 26 HOH HOH . 
F 3 HOH B 10 310 70 HOH HOH . 
F 3 HOH B 11 311 46 HOH HOH . 
F 3 HOH B 12 312 74 HOH HOH . 
F 3 HOH B 13 313 98 HOH HOH . 
F 3 HOH B 14 314 11 HOH HOH . 
F 3 HOH B 15 315 18 HOH HOH . 
F 3 HOH B 16 316 82 HOH HOH . 
F 3 HOH B 17 317 61 HOH HOH . 
F 3 HOH B 18 318 35 HOH HOH . 
F 3 HOH B 19 319 38 HOH HOH . 
F 3 HOH B 20 320 9 HOH HOH . 
F 3 HOH B 21 321 3 HOH HOH . 
F 3 HOH B 22 322 88 HOH HOH . 
F 3 HOH B 23 323 76 HOH HOH . 
F 3 HOH B 24 324 44 HOH HOH . 
F 3 HOH B 25 325 29 HOH HOH . 
F 3 HOH B 26 326 108 HOH HOH . 
F 3 HOH B 27 327 120 HOH HOH . 
F 3 HOH B 28 328 63 HOH HOH . 
F 3 HOH B 29 329 113 HOH HOH . 
F 3 HOH B 30 330 25 HOH HOH . 
F 3 HOH B 31 331 20 HOH HOH . 
F 3 HOH B 32 332 80 HOH HOH . 
F 3 HOH B 33 333 23 HOH HOH . 
F 3 HOH B 34 334 66 HOH HOH . 
F 3 HOH B 35 335 118 HOH HOH . 
F 3 HOH B 36 336 52 HOH HOH . 
F 3 HOH B 37 337 119 HOH HOH . 
F 3 HOH B 38 338 62 HOH HOH . 
F 3 HOH B 39 339 58 HOH HOH . 
F 3 HOH B 40 340 109 HOH HOH . 
F 3 HOH B 41 341 69 HOH HOH . 
F 3 HOH B 42 342 28 HOH HOH . 
F 3 HOH B 43 343 101 HOH HOH . 
F 3 HOH B 44 344 110 HOH HOH . 
F 3 HOH B 45 345 104 HOH HOH . 
F 3 HOH B 46 346 114 HOH HOH . 
F 3 HOH B 47 347 67 HOH HOH . 
F 3 HOH B 48 348 90 HOH HOH . 
F 3 HOH B 49 349 83 HOH HOH . 
F 3 HOH B 50 350 86 HOH HOH . 
F 3 HOH B 51 351 95 HOH HOH . 
F 3 HOH B 52 352 77 HOH HOH . 
F 3 HOH B 53 353 92 HOH HOH . 
F 3 HOH B 54 354 96 HOH HOH . 
F 3 HOH B 55 355 21 HOH HOH . 
F 3 HOH B 56 356 103 HOH HOH . 
F 3 HOH B 57 357 84 HOH HOH . 
F 3 HOH B 58 358 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 C9L . . . D 2 4.029 -11.116 -17.507 1 66.38 ? C11 C9L 200 B 1 
HETATM 2 C C13 C9L . . . D 2 -1.503 -12.263 -14.48 1 64.35 ? C13 C9L 200 B 1 
HETATM 3 C C15 C9L . . . D 2 -3.476 -11.344 -13.245 1 61.02 ? C15 C9L 200 B 1 
HETATM 4 C C16 C9L . . . D 2 -2.585 -10.545 -12.422 1 55.56 ? C16 C9L 200 B 1 
HETATM 5 C C17 C9L . . . D 2 -1.322 -10.118 -13.172 1 56.29 ? C17 C9L 200 B 1 
HETATM 6 C C01 C9L . . . D 2 0.542 -11.36 -17.343 1 53.16 ? C01 C9L 200 B 1 
HETATM 7 C C02 C9L . . . D 2 0.685 -10.309 -16.251 1 52.77 ? C02 C9L 200 B 1 
HETATM 8 C C03 C9L . . . D 2 1.506 -10.841 -15.082 1 52.38 ? C03 C9L 200 B 1 
HETATM 9 C C04 C9L . . . D 2 0.904 -11.298 -13.925 1 53.31 ? C04 C9L 200 B 1 
HETATM 10 N N05 C9L . . . D 2 1.716 -11.732 -12.97 1 44.96 ? N05 C9L 200 B 1 
HETATM 11 C C06 C9L . . . D 2 3.041 -11.742 -13.112 1 41.9 ? C06 C9L 200 B 1 
HETATM 12 N N07 C9L . . . D 2 3.853 -12.241 -12.019 1 20.17 ? N07 C9L 200 B 1 
HETATM 13 N N08 C9L . . . D 2 3.632 -11.316 -14.22 1 29.33 ? N08 C9L 200 B 1 
HETATM 14 C C09 C9L . . . D 2 2.883 -10.884 -15.219 1 49.54 ? C09 C9L 200 B 1 
HETATM 15 N N10 C9L . . . D 2 3.437 -10.358 -16.446 1 63.53 ? N10 C9L 200 B 1 
HETATM 16 N N12 C9L . . . D 2 -0.55 -11.284 -13.779 1 57.79 ? N12 C9L 200 B 1 
HETATM 17 C C14 C9L . . . D 2 -2.826 -12.541 -13.752 1 67.85 ? C14 C9L 200 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           17 
#