data_6JVK # _model_server_result.job_id WXl1qAAQgtS19Kmkd1SE8Q _model_server_result.datetime_utc '2025-01-10 13:19:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 6JVK # _exptl.entry_id 6JVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.29 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N4-methyl-6-(4-methylpiperazin-1-yl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JVK _cell.length_a 59.028 _cell.length_b 67.78 _cell.length_c 79.592 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H18 N6' _chem_comp.formula_weight 222.29 _chem_comp.id CEU _chem_comp.mon_nstd_flag . _chem_comp.name N4-methyl-6-(4-methylpiperazin-1-yl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C10 CEU sing 70 n n C07 N02 CEU sing 71 n n C07 C06 CEU sing 72 n n N02 C01 CEU sing 73 n n N02 C03 CEU sing 74 n n C10 N09 CEU doub 75 n y C10 N12 CEU sing 76 n y N09 C08 CEU sing 77 n y C06 N05 CEU sing 78 n n C03 C04 CEU sing 79 n n N12 C13 CEU doub 80 n y C08 N05 CEU sing 81 n n C08 C16 CEU doub 82 n y N05 C04 CEU sing 83 n n C13 C16 CEU sing 84 n y C13 N14 CEU sing 85 n n N14 C15 CEU sing 86 n n C01 H1 CEU sing 87 n n C01 H2 CEU sing 88 n n C01 H3 CEU sing 89 n n C03 H5 CEU sing 90 n n C03 H6 CEU sing 91 n n C04 H7 CEU sing 92 n n C04 H8 CEU sing 93 n n C06 H9 CEU sing 94 n n C06 H10 CEU sing 95 n n C07 H11 CEU sing 96 n n C07 H12 CEU sing 97 n n N11 H13 CEU sing 98 n n N11 H14 CEU sing 99 n n N14 H15 CEU sing 100 n n C15 H16 CEU sing 101 n n C15 H17 CEU sing 102 n n C15 H18 CEU sing 103 n n C16 H19 CEU sing 104 n n # _atom_sites.entry_id 6JVK _atom_sites.fract_transf_matrix[1][1] 0.016941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CEU A 1 200 200 CEU MPD . D 3 HOH A 1 301 15 HOH HOH . D 3 HOH A 2 302 252 HOH HOH . D 3 HOH A 3 303 30 HOH HOH . D 3 HOH A 4 304 68 HOH HOH . D 3 HOH A 5 305 133 HOH HOH . D 3 HOH A 6 306 209 HOH HOH . D 3 HOH A 7 307 135 HOH HOH . D 3 HOH A 8 308 33 HOH HOH . D 3 HOH A 9 309 148 HOH HOH . D 3 HOH A 10 310 256 HOH HOH . D 3 HOH A 11 311 122 HOH HOH . D 3 HOH A 12 312 108 HOH HOH . D 3 HOH A 13 313 78 HOH HOH . D 3 HOH A 14 314 222 HOH HOH . D 3 HOH A 15 315 79 HOH HOH . D 3 HOH A 16 316 164 HOH HOH . D 3 HOH A 17 317 142 HOH HOH . D 3 HOH A 18 318 139 HOH HOH . D 3 HOH A 19 319 162 HOH HOH . D 3 HOH A 20 320 173 HOH HOH . D 3 HOH A 21 321 69 HOH HOH . D 3 HOH A 22 322 244 HOH HOH . D 3 HOH A 23 323 41 HOH HOH . D 3 HOH A 24 324 160 HOH HOH . D 3 HOH A 25 325 159 HOH HOH . D 3 HOH A 26 326 127 HOH HOH . D 3 HOH A 27 327 80 HOH HOH . D 3 HOH A 28 328 88 HOH HOH . D 3 HOH A 29 329 187 HOH HOH . D 3 HOH A 30 330 177 HOH HOH . D 3 HOH A 31 331 47 HOH HOH . D 3 HOH A 32 332 11 HOH HOH . D 3 HOH A 33 333 84 HOH HOH . D 3 HOH A 34 334 3 HOH HOH . D 3 HOH A 35 335 76 HOH HOH . D 3 HOH A 36 336 5 HOH HOH . D 3 HOH A 37 337 234 HOH HOH . D 3 HOH A 38 338 26 HOH HOH . D 3 HOH A 39 339 171 HOH HOH . D 3 HOH A 40 340 19 HOH HOH . D 3 HOH A 41 341 179 HOH HOH . D 3 HOH A 42 342 114 HOH HOH . D 3 HOH A 43 343 59 HOH HOH . D 3 HOH A 44 344 6 HOH HOH . D 3 HOH A 45 345 178 HOH HOH . D 3 HOH A 46 346 147 HOH HOH . D 3 HOH A 47 347 216 HOH HOH . D 3 HOH A 48 348 155 HOH HOH . D 3 HOH A 49 349 54 HOH HOH . D 3 HOH A 50 350 24 HOH HOH . D 3 HOH A 51 351 144 HOH HOH . D 3 HOH A 52 352 73 HOH HOH . D 3 HOH A 53 353 2 HOH HOH . D 3 HOH A 54 354 9 HOH HOH . D 3 HOH A 55 355 25 HOH HOH . D 3 HOH A 56 356 255 HOH HOH . D 3 HOH A 57 357 87 HOH HOH . D 3 HOH A 58 358 20 HOH HOH . D 3 HOH A 59 359 230 HOH HOH . D 3 HOH A 60 360 191 HOH HOH . D 3 HOH A 61 361 106 HOH HOH . D 3 HOH A 62 362 93 HOH HOH . D 3 HOH A 63 363 22 HOH HOH . D 3 HOH A 64 364 23 HOH HOH . D 3 HOH A 65 365 251 HOH HOH . D 3 HOH A 66 366 254 HOH HOH . D 3 HOH A 67 367 16 HOH HOH . D 3 HOH A 68 368 165 HOH HOH . D 3 HOH A 69 369 28 HOH HOH . D 3 HOH A 70 370 74 HOH HOH . D 3 HOH A 71 371 89 HOH HOH . D 3 HOH A 72 372 161 HOH HOH . D 3 HOH A 73 373 8 HOH HOH . D 3 HOH A 74 374 111 HOH HOH . D 3 HOH A 75 375 4 HOH HOH . D 3 HOH A 76 376 81 HOH HOH . D 3 HOH A 77 377 90 HOH HOH . D 3 HOH A 78 378 138 HOH HOH . D 3 HOH A 79 379 60 HOH HOH . D 3 HOH A 80 380 62 HOH HOH . D 3 HOH A 81 381 253 HOH HOH . D 3 HOH A 82 382 201 HOH HOH . D 3 HOH A 83 383 63 HOH HOH . D 3 HOH A 84 384 124 HOH HOH . D 3 HOH A 85 385 126 HOH HOH . D 3 HOH A 86 386 130 HOH HOH . D 3 HOH A 87 387 49 HOH HOH . D 3 HOH A 88 388 65 HOH HOH . D 3 HOH A 89 389 156 HOH HOH . D 3 HOH A 90 390 64 HOH HOH . D 3 HOH A 91 391 120 HOH HOH . D 3 HOH A 92 392 58 HOH HOH . D 3 HOH A 93 393 250 HOH HOH . D 3 HOH A 94 394 211 HOH HOH . D 3 HOH A 95 395 66 HOH HOH . D 3 HOH A 96 396 98 HOH HOH . D 3 HOH A 97 397 213 HOH HOH . D 3 HOH A 98 398 257 HOH HOH . D 3 HOH A 99 399 151 HOH HOH . D 3 HOH A 100 400 72 HOH HOH . D 3 HOH A 101 401 39 HOH HOH . D 3 HOH A 102 402 97 HOH HOH . D 3 HOH A 103 403 56 HOH HOH . D 3 HOH A 104 404 214 HOH HOH . D 3 HOH A 105 405 238 HOH HOH . D 3 HOH A 106 406 42 HOH HOH . D 3 HOH A 107 407 116 HOH HOH . D 3 HOH A 108 408 134 HOH HOH . D 3 HOH A 109 409 27 HOH HOH . D 3 HOH A 110 410 215 HOH HOH . D 3 HOH A 111 411 207 HOH HOH . D 3 HOH A 112 412 158 HOH HOH . D 3 HOH A 113 413 167 HOH HOH . D 3 HOH A 114 414 18 HOH HOH . D 3 HOH A 115 415 182 HOH HOH . D 3 HOH A 116 416 220 HOH HOH . D 3 HOH A 117 417 136 HOH HOH . D 3 HOH A 118 418 77 HOH HOH . D 3 HOH A 119 419 249 HOH HOH . D 3 HOH A 120 420 129 HOH HOH . D 3 HOH A 121 421 143 HOH HOH . D 3 HOH A 122 422 123 HOH HOH . D 3 HOH A 123 423 258 HOH HOH . D 3 HOH A 124 424 112 HOH HOH . D 3 HOH A 125 425 227 HOH HOH . D 3 HOH A 126 426 117 HOH HOH . D 3 HOH A 127 427 239 HOH HOH . D 3 HOH A 128 428 246 HOH HOH . D 3 HOH A 129 429 259 HOH HOH . D 3 HOH A 130 430 224 HOH HOH . D 3 HOH A 131 431 260 HOH HOH . D 3 HOH A 132 432 199 HOH HOH . D 3 HOH A 133 433 219 HOH HOH . D 3 HOH A 134 434 236 HOH HOH . D 3 HOH A 135 435 206 HOH HOH . D 3 HOH A 136 436 237 HOH HOH . D 3 HOH A 137 437 168 HOH HOH . D 3 HOH A 138 438 226 HOH HOH . D 3 HOH A 139 439 166 HOH HOH . D 3 HOH A 140 440 153 HOH HOH . D 3 HOH A 141 441 242 HOH HOH . D 3 HOH A 142 442 221 HOH HOH . D 3 HOH A 143 443 198 HOH HOH . D 3 HOH A 144 444 196 HOH HOH . D 3 HOH A 145 445 131 HOH HOH . D 3 HOH A 146 446 210 HOH HOH . D 3 HOH A 147 447 170 HOH HOH . D 3 HOH A 148 448 91 HOH HOH . D 3 HOH A 149 449 192 HOH HOH . E 3 HOH B 1 201 71 HOH HOH . E 3 HOH B 2 202 163 HOH HOH . E 3 HOH B 3 203 232 HOH HOH . E 3 HOH B 4 204 57 HOH HOH . E 3 HOH B 5 205 50 HOH HOH . E 3 HOH B 6 206 70 HOH HOH . E 3 HOH B 7 207 17 HOH HOH . E 3 HOH B 8 208 193 HOH HOH . E 3 HOH B 9 209 13 HOH HOH . E 3 HOH B 10 210 200 HOH HOH . E 3 HOH B 11 211 228 HOH HOH . E 3 HOH B 12 212 45 HOH HOH . E 3 HOH B 13 213 205 HOH HOH . E 3 HOH B 14 214 137 HOH HOH . E 3 HOH B 15 215 35 HOH HOH . E 3 HOH B 16 216 34 HOH HOH . E 3 HOH B 17 217 115 HOH HOH . E 3 HOH B 18 218 51 HOH HOH . E 3 HOH B 19 219 150 HOH HOH . E 3 HOH B 20 220 67 HOH HOH . E 3 HOH B 21 221 92 HOH HOH . E 3 HOH B 22 222 154 HOH HOH . E 3 HOH B 23 223 141 HOH HOH . E 3 HOH B 24 224 241 HOH HOH . E 3 HOH B 25 225 44 HOH HOH . E 3 HOH B 26 226 10 HOH HOH . E 3 HOH B 27 227 204 HOH HOH . E 3 HOH B 28 228 38 HOH HOH . E 3 HOH B 29 229 43 HOH HOH . E 3 HOH B 30 230 86 HOH HOH . E 3 HOH B 31 231 32 HOH HOH . E 3 HOH B 32 232 40 HOH HOH . E 3 HOH B 33 233 233 HOH HOH . E 3 HOH B 34 234 31 HOH HOH . E 3 HOH B 35 235 223 HOH HOH . E 3 HOH B 36 236 96 HOH HOH . E 3 HOH B 37 237 29 HOH HOH . E 3 HOH B 38 238 172 HOH HOH . E 3 HOH B 39 239 118 HOH HOH . E 3 HOH B 40 240 208 HOH HOH . E 3 HOH B 41 241 102 HOH HOH . E 3 HOH B 42 242 145 HOH HOH . E 3 HOH B 43 243 119 HOH HOH . E 3 HOH B 44 244 14 HOH HOH . E 3 HOH B 45 245 107 HOH HOH . E 3 HOH B 46 246 128 HOH HOH . E 3 HOH B 47 247 83 HOH HOH . E 3 HOH B 48 248 132 HOH HOH . E 3 HOH B 49 249 229 HOH HOH . E 3 HOH B 50 250 235 HOH HOH . E 3 HOH B 51 251 55 HOH HOH . E 3 HOH B 52 252 169 HOH HOH . E 3 HOH B 53 253 218 HOH HOH . E 3 HOH B 54 254 110 HOH HOH . E 3 HOH B 55 255 75 HOH HOH . E 3 HOH B 56 256 101 HOH HOH . E 3 HOH B 57 257 174 HOH HOH . E 3 HOH B 58 258 85 HOH HOH . E 3 HOH B 59 259 109 HOH HOH . E 3 HOH B 60 260 82 HOH HOH . E 3 HOH B 61 261 94 HOH HOH . E 3 HOH B 62 262 125 HOH HOH . E 3 HOH B 63 263 225 HOH HOH . E 3 HOH B 64 264 217 HOH HOH . E 3 HOH B 65 265 95 HOH HOH . E 3 HOH B 66 266 36 HOH HOH . E 3 HOH B 67 267 195 HOH HOH . E 3 HOH B 68 268 247 HOH HOH . E 3 HOH B 69 269 212 HOH HOH . E 3 HOH B 70 270 37 HOH HOH . E 3 HOH B 71 271 105 HOH HOH . E 3 HOH B 72 272 103 HOH HOH . E 3 HOH B 73 273 48 HOH HOH . E 3 HOH B 74 274 152 HOH HOH . E 3 HOH B 75 275 46 HOH HOH . E 3 HOH B 76 276 121 HOH HOH . E 3 HOH B 77 277 240 HOH HOH . E 3 HOH B 78 278 197 HOH HOH . E 3 HOH B 79 279 146 HOH HOH . E 3 HOH B 80 280 1 HOH HOH . E 3 HOH B 81 281 194 HOH HOH . E 3 HOH B 82 282 113 HOH HOH . E 3 HOH B 83 283 180 HOH HOH . E 3 HOH B 84 284 61 HOH HOH . E 3 HOH B 85 285 149 HOH HOH . E 3 HOH B 86 286 12 HOH HOH . E 3 HOH B 87 287 52 HOH HOH . E 3 HOH B 88 288 202 HOH HOH . E 3 HOH B 89 289 7 HOH HOH . E 3 HOH B 90 290 157 HOH HOH . E 3 HOH B 91 291 184 HOH HOH . E 3 HOH B 92 292 176 HOH HOH . E 3 HOH B 93 293 248 HOH HOH . E 3 HOH B 94 294 181 HOH HOH . E 3 HOH B 95 295 190 HOH HOH . E 3 HOH B 96 296 53 HOH HOH . E 3 HOH B 97 297 203 HOH HOH . E 3 HOH B 98 298 188 HOH HOH . E 3 HOH B 99 299 21 HOH HOH . E 3 HOH B 100 300 140 HOH HOH . E 3 HOH B 101 301 231 HOH HOH . E 3 HOH B 102 302 189 HOH HOH . E 3 HOH B 103 303 185 HOH HOH . E 3 HOH B 104 304 99 HOH HOH . E 3 HOH B 105 305 100 HOH HOH . E 3 HOH B 106 306 183 HOH HOH . E 3 HOH B 107 307 245 HOH HOH . E 3 HOH B 108 308 175 HOH HOH . E 3 HOH B 109 309 186 HOH HOH . E 3 HOH B 110 310 243 HOH HOH . E 3 HOH B 111 311 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 CEU . . . C 2 4.443 -9.125 15.601 1 56.54 ? C01 CEU 200 A 1 HETATM 2 N N02 CEU . . . C 2 3.345 -8.709 15.124 1 52.3 ? N02 CEU 200 A 1 HETATM 3 C C03 CEU . . . C 2 2.727 -7.791 15.949 1 47.33 ? C03 CEU 200 A 1 HETATM 4 C C04 CEU . . . C 2 1.659 -8.279 16.906 1 40.14 ? C04 CEU 200 A 1 HETATM 5 N N05 CEU . . . C 2 0.831 -9.324 16.342 1 35.56 ? N05 CEU 200 A 1 HETATM 6 C C06 CEU . . . C 2 1.662 -10.307 15.701 1 38.75 ? C06 CEU 200 A 1 HETATM 7 C C07 CEU . . . C 2 2.582 -9.727 14.648 1 42.41 ? C07 CEU 200 A 1 HETATM 8 C C08 CEU . . . C 2 -0.658 -9.334 16.268 1 20.12 ? C08 CEU 200 A 1 HETATM 9 N N09 CEU . . . C 2 -1.255 -10.146 15.383 1 21.95 ? N09 CEU 200 A 1 HETATM 10 C C10 CEU . . . C 2 -2.589 -10.205 15.256 1 19.51 ? C10 CEU 200 A 1 HETATM 11 N N11 CEU . . . C 2 -3.15 -11.132 14.273 1 14.79 ? N11 CEU 200 A 1 HETATM 12 N N12 CEU . . . C 2 -3.382 -9.442 15.999 1 16.86 ? N12 CEU 200 A 1 HETATM 13 C C13 CEU . . . C 2 -2.861 -8.61 16.926 1 14 ? C13 CEU 200 A 1 HETATM 14 N N14 CEU . . . C 2 -3.743 -7.794 17.762 1 19.39 ? N14 CEU 200 A 1 HETATM 15 C C15 CEU . . . C 2 -3.181 -6.958 18.79 1 22.51 ? C15 CEU 200 A 1 HETATM 16 C C16 CEU . . . C 2 -1.455 -8.532 17.078 1 15.18 ? C16 CEU 200 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #