data_6JVL # _model_server_result.job_id 0fx_R8RBRqwYRQ0rzylQ1A _model_server_result.datetime_utc '2024-11-05 10:55:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 6JVL # _exptl.entry_id 6JVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.381 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N4-cyclopropyl-5-ethyl-6-(4-methylpiperazin-1-yl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JVL _cell.length_a 59.244 _cell.length_b 67.227 _cell.length_c 79.583 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H24 N6' _chem_comp.formula_weight 276.381 _chem_comp.id CG0 _chem_comp.mon_nstd_flag . _chem_comp.name N4-cyclopropyl-5-ethyl-6-(4-methylpiperazin-1-yl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 CG0 sing 70 n n C17 C15 CG0 sing 71 n n C16 C15 CG0 sing 72 n n C20 C19 CG0 sing 73 n n C15 N14 CG0 sing 74 n n C19 C18 CG0 sing 75 n n N14 C13 CG0 sing 76 n n C18 C13 CG0 doub 77 n y C18 C08 CG0 sing 78 n y C06 C07 CG0 sing 79 n n C06 N05 CG0 sing 80 n n C13 N12 CG0 sing 81 n y C07 N02 CG0 sing 82 n n N05 C08 CG0 sing 83 n n N05 C04 CG0 sing 84 n n C08 N09 CG0 doub 85 n y N12 C10 CG0 doub 86 n y N09 C10 CG0 sing 87 n y C10 N11 CG0 sing 88 n n N02 C03 CG0 sing 89 n n N02 C01 CG0 sing 90 n n C04 C03 CG0 sing 91 n n C15 H1 CG0 sing 92 n n C16 H2 CG0 sing 93 n n C16 H3 CG0 sing 94 n n C17 H4 CG0 sing 95 n n C17 H5 CG0 sing 96 n n C01 H6 CG0 sing 97 n n C01 H7 CG0 sing 98 n n C01 H8 CG0 sing 99 n n C03 H9 CG0 sing 100 n n C03 H10 CG0 sing 101 n n C04 H11 CG0 sing 102 n n C04 H12 CG0 sing 103 n n C06 H13 CG0 sing 104 n n C06 H14 CG0 sing 105 n n C07 H15 CG0 sing 106 n n C07 H16 CG0 sing 107 n n C19 H17 CG0 sing 108 n n C19 H18 CG0 sing 109 n n C20 H19 CG0 sing 110 n n C20 H20 CG0 sing 111 n n C20 H21 CG0 sing 112 n n N11 H23 CG0 sing 113 n n N11 H24 CG0 sing 114 n n N14 H25 CG0 sing 115 n n # _atom_sites.entry_id 6JVL _atom_sites.fract_transf_matrix[1][1] 0.016879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CG0 A 1 200 200 CG0 CEP . D 3 HOH A 1 301 49 HOH HOH . D 3 HOH A 2 302 153 HOH HOH . D 3 HOH A 3 303 61 HOH HOH . D 3 HOH A 4 304 41 HOH HOH . D 3 HOH A 5 305 11 HOH HOH . D 3 HOH A 6 306 243 HOH HOH . D 3 HOH A 7 307 171 HOH HOH . D 3 HOH A 8 308 138 HOH HOH . D 3 HOH A 9 309 108 HOH HOH . D 3 HOH A 10 310 169 HOH HOH . D 3 HOH A 11 311 228 HOH HOH . D 3 HOH A 12 312 198 HOH HOH . D 3 HOH A 13 313 244 HOH HOH . D 3 HOH A 14 314 99 HOH HOH . D 3 HOH A 15 315 88 HOH HOH . D 3 HOH A 16 316 101 HOH HOH . D 3 HOH A 17 317 183 HOH HOH . D 3 HOH A 18 318 115 HOH HOH . D 3 HOH A 19 319 58 HOH HOH . D 3 HOH A 20 320 161 HOH HOH . D 3 HOH A 21 321 201 HOH HOH . D 3 HOH A 22 322 75 HOH HOH . D 3 HOH A 23 323 158 HOH HOH . D 3 HOH A 24 324 16 HOH HOH . D 3 HOH A 25 325 105 HOH HOH . D 3 HOH A 26 326 239 HOH HOH . D 3 HOH A 27 327 5 HOH HOH . D 3 HOH A 28 328 80 HOH HOH . D 3 HOH A 29 329 45 HOH HOH . D 3 HOH A 30 330 162 HOH HOH . D 3 HOH A 31 331 47 HOH HOH . D 3 HOH A 32 332 177 HOH HOH . D 3 HOH A 33 333 102 HOH HOH . D 3 HOH A 34 334 143 HOH HOH . D 3 HOH A 35 335 1 HOH HOH . D 3 HOH A 36 336 83 HOH HOH . D 3 HOH A 37 337 19 HOH HOH . D 3 HOH A 38 338 254 HOH HOH . D 3 HOH A 39 339 89 HOH HOH . D 3 HOH A 40 340 34 HOH HOH . D 3 HOH A 41 341 252 HOH HOH . D 3 HOH A 42 342 73 HOH HOH . D 3 HOH A 43 343 92 HOH HOH . D 3 HOH A 44 344 13 HOH HOH . D 3 HOH A 45 345 124 HOH HOH . D 3 HOH A 46 346 225 HOH HOH . D 3 HOH A 47 347 68 HOH HOH . D 3 HOH A 48 348 141 HOH HOH . D 3 HOH A 49 349 62 HOH HOH . D 3 HOH A 50 350 40 HOH HOH . D 3 HOH A 51 351 123 HOH HOH . D 3 HOH A 52 352 10 HOH HOH . D 3 HOH A 53 353 134 HOH HOH . D 3 HOH A 54 354 230 HOH HOH . D 3 HOH A 55 355 106 HOH HOH . D 3 HOH A 56 356 196 HOH HOH . D 3 HOH A 57 357 197 HOH HOH . D 3 HOH A 58 358 151 HOH HOH . D 3 HOH A 59 359 79 HOH HOH . D 3 HOH A 60 360 37 HOH HOH . D 3 HOH A 61 361 65 HOH HOH . D 3 HOH A 62 362 17 HOH HOH . D 3 HOH A 63 363 144 HOH HOH . D 3 HOH A 64 364 118 HOH HOH . D 3 HOH A 65 365 78 HOH HOH . D 3 HOH A 66 366 145 HOH HOH . D 3 HOH A 67 367 165 HOH HOH . D 3 HOH A 68 368 18 HOH HOH . D 3 HOH A 69 369 2 HOH HOH . D 3 HOH A 70 370 90 HOH HOH . D 3 HOH A 71 371 157 HOH HOH . D 3 HOH A 72 372 51 HOH HOH . D 3 HOH A 73 373 72 HOH HOH . D 3 HOH A 74 374 133 HOH HOH . D 3 HOH A 75 375 119 HOH HOH . D 3 HOH A 76 376 164 HOH HOH . D 3 HOH A 77 377 186 HOH HOH . D 3 HOH A 78 378 77 HOH HOH . D 3 HOH A 79 379 64 HOH HOH . D 3 HOH A 80 380 32 HOH HOH . D 3 HOH A 81 381 163 HOH HOH . D 3 HOH A 82 382 234 HOH HOH . D 3 HOH A 83 383 236 HOH HOH . D 3 HOH A 84 384 7 HOH HOH . D 3 HOH A 85 385 146 HOH HOH . D 3 HOH A 86 386 170 HOH HOH . D 3 HOH A 87 387 85 HOH HOH . D 3 HOH A 88 388 202 HOH HOH . D 3 HOH A 89 389 188 HOH HOH . D 3 HOH A 90 390 104 HOH HOH . D 3 HOH A 91 391 8 HOH HOH . D 3 HOH A 92 392 211 HOH HOH . D 3 HOH A 93 393 44 HOH HOH . D 3 HOH A 94 394 33 HOH HOH . D 3 HOH A 95 395 149 HOH HOH . D 3 HOH A 96 396 249 HOH HOH . D 3 HOH A 97 397 131 HOH HOH . D 3 HOH A 98 398 227 HOH HOH . D 3 HOH A 99 399 150 HOH HOH . D 3 HOH A 100 400 185 HOH HOH . D 3 HOH A 101 401 113 HOH HOH . D 3 HOH A 102 402 74 HOH HOH . D 3 HOH A 103 403 94 HOH HOH . D 3 HOH A 104 404 126 HOH HOH . D 3 HOH A 105 405 250 HOH HOH . D 3 HOH A 106 406 23 HOH HOH . D 3 HOH A 107 407 66 HOH HOH . D 3 HOH A 108 408 50 HOH HOH . D 3 HOH A 109 409 154 HOH HOH . D 3 HOH A 110 410 132 HOH HOH . D 3 HOH A 111 411 226 HOH HOH . D 3 HOH A 112 412 166 HOH HOH . D 3 HOH A 113 413 70 HOH HOH . D 3 HOH A 114 414 53 HOH HOH . D 3 HOH A 115 415 107 HOH HOH . D 3 HOH A 116 416 14 HOH HOH . D 3 HOH A 117 417 9 HOH HOH . D 3 HOH A 118 418 3 HOH HOH . D 3 HOH A 119 419 6 HOH HOH . D 3 HOH A 120 420 156 HOH HOH . D 3 HOH A 121 421 195 HOH HOH . D 3 HOH A 122 422 117 HOH HOH . D 3 HOH A 123 423 98 HOH HOH . D 3 HOH A 124 424 256 HOH HOH . D 3 HOH A 125 425 179 HOH HOH . D 3 HOH A 126 426 142 HOH HOH . D 3 HOH A 127 427 26 HOH HOH . D 3 HOH A 128 428 29 HOH HOH . D 3 HOH A 129 429 180 HOH HOH . D 3 HOH A 130 430 259 HOH HOH . D 3 HOH A 131 431 205 HOH HOH . D 3 HOH A 132 432 100 HOH HOH . D 3 HOH A 133 433 241 HOH HOH . D 3 HOH A 134 434 251 HOH HOH . D 3 HOH A 135 435 160 HOH HOH . D 3 HOH A 136 436 182 HOH HOH . D 3 HOH A 137 437 253 HOH HOH . D 3 HOH A 138 438 257 HOH HOH . D 3 HOH A 139 439 213 HOH HOH . D 3 HOH A 140 440 219 HOH HOH . D 3 HOH A 141 441 191 HOH HOH . D 3 HOH A 142 442 155 HOH HOH . D 3 HOH A 143 443 232 HOH HOH . D 3 HOH A 144 444 231 HOH HOH . D 3 HOH A 145 445 214 HOH HOH . D 3 HOH A 146 446 147 HOH HOH . D 3 HOH A 147 447 110 HOH HOH . D 3 HOH A 148 448 173 HOH HOH . D 3 HOH A 149 449 260 HOH HOH . D 3 HOH A 150 450 242 HOH HOH . D 3 HOH A 151 451 240 HOH HOH . D 3 HOH A 152 452 137 HOH HOH . D 3 HOH A 153 453 208 HOH HOH . D 3 HOH A 154 454 189 HOH HOH . D 3 HOH A 155 455 194 HOH HOH . D 3 HOH A 156 456 176 HOH HOH . D 3 HOH A 157 457 103 HOH HOH . D 3 HOH A 158 458 248 HOH HOH . D 3 HOH A 159 459 238 HOH HOH . D 3 HOH A 160 460 258 HOH HOH . D 3 HOH A 161 461 168 HOH HOH . E 3 HOH B 1 201 86 HOH HOH . E 3 HOH B 2 202 255 HOH HOH . E 3 HOH B 3 203 25 HOH HOH . E 3 HOH B 4 204 220 HOH HOH . E 3 HOH B 5 205 21 HOH HOH . E 3 HOH B 6 206 125 HOH HOH . E 3 HOH B 7 207 172 HOH HOH . E 3 HOH B 8 208 76 HOH HOH . E 3 HOH B 9 209 130 HOH HOH . E 3 HOH B 10 210 54 HOH HOH . E 3 HOH B 11 211 82 HOH HOH . E 3 HOH B 12 212 175 HOH HOH . E 3 HOH B 13 213 27 HOH HOH . E 3 HOH B 14 214 69 HOH HOH . E 3 HOH B 15 215 223 HOH HOH . E 3 HOH B 16 216 109 HOH HOH . E 3 HOH B 17 217 57 HOH HOH . E 3 HOH B 18 218 129 HOH HOH . E 3 HOH B 19 219 48 HOH HOH . E 3 HOH B 20 220 12 HOH HOH . E 3 HOH B 21 221 112 HOH HOH . E 3 HOH B 22 222 111 HOH HOH . E 3 HOH B 23 223 91 HOH HOH . E 3 HOH B 24 224 192 HOH HOH . E 3 HOH B 25 225 184 HOH HOH . E 3 HOH B 26 226 93 HOH HOH . E 3 HOH B 27 227 24 HOH HOH . E 3 HOH B 28 228 43 HOH HOH . E 3 HOH B 29 229 120 HOH HOH . E 3 HOH B 30 230 114 HOH HOH . E 3 HOH B 31 231 235 HOH HOH . E 3 HOH B 32 232 199 HOH HOH . E 3 HOH B 33 233 215 HOH HOH . E 3 HOH B 34 234 60 HOH HOH . E 3 HOH B 35 235 35 HOH HOH . E 3 HOH B 36 236 31 HOH HOH . E 3 HOH B 37 237 20 HOH HOH . E 3 HOH B 38 238 140 HOH HOH . E 3 HOH B 39 239 122 HOH HOH . E 3 HOH B 40 240 96 HOH HOH . E 3 HOH B 41 241 28 HOH HOH . E 3 HOH B 42 242 63 HOH HOH . E 3 HOH B 43 243 71 HOH HOH . E 3 HOH B 44 244 229 HOH HOH . E 3 HOH B 45 245 116 HOH HOH . E 3 HOH B 46 246 22 HOH HOH . E 3 HOH B 47 247 222 HOH HOH . E 3 HOH B 48 248 42 HOH HOH . E 3 HOH B 49 249 148 HOH HOH . E 3 HOH B 50 250 95 HOH HOH . E 3 HOH B 51 251 36 HOH HOH . E 3 HOH B 52 252 56 HOH HOH . E 3 HOH B 53 253 67 HOH HOH . E 3 HOH B 54 254 52 HOH HOH . E 3 HOH B 55 255 59 HOH HOH . E 3 HOH B 56 256 247 HOH HOH . E 3 HOH B 57 257 39 HOH HOH . E 3 HOH B 58 258 221 HOH HOH . E 3 HOH B 59 259 4 HOH HOH . E 3 HOH B 60 260 159 HOH HOH . E 3 HOH B 61 261 55 HOH HOH . E 3 HOH B 62 262 246 HOH HOH . E 3 HOH B 63 263 121 HOH HOH . E 3 HOH B 64 264 87 HOH HOH . E 3 HOH B 65 265 127 HOH HOH . E 3 HOH B 66 266 203 HOH HOH . E 3 HOH B 67 267 152 HOH HOH . E 3 HOH B 68 268 128 HOH HOH . E 3 HOH B 69 269 181 HOH HOH . E 3 HOH B 70 270 206 HOH HOH . E 3 HOH B 71 271 218 HOH HOH . E 3 HOH B 72 272 135 HOH HOH . E 3 HOH B 73 273 139 HOH HOH . E 3 HOH B 74 274 200 HOH HOH . E 3 HOH B 75 275 209 HOH HOH . E 3 HOH B 76 276 207 HOH HOH . E 3 HOH B 77 277 81 HOH HOH . E 3 HOH B 78 278 84 HOH HOH . E 3 HOH B 79 279 245 HOH HOH . E 3 HOH B 80 280 190 HOH HOH . E 3 HOH B 81 281 46 HOH HOH . E 3 HOH B 82 282 97 HOH HOH . E 3 HOH B 83 283 193 HOH HOH . E 3 HOH B 84 284 204 HOH HOH . E 3 HOH B 85 285 212 HOH HOH . E 3 HOH B 86 286 30 HOH HOH . E 3 HOH B 87 287 178 HOH HOH . E 3 HOH B 88 288 237 HOH HOH . E 3 HOH B 89 289 233 HOH HOH . E 3 HOH B 90 290 136 HOH HOH . E 3 HOH B 91 291 167 HOH HOH . E 3 HOH B 92 292 216 HOH HOH . E 3 HOH B 93 293 210 HOH HOH . E 3 HOH B 94 294 217 HOH HOH . E 3 HOH B 95 295 174 HOH HOH . E 3 HOH B 96 296 187 HOH HOH . E 3 HOH B 97 297 224 HOH HOH . E 3 HOH B 98 298 15 HOH HOH . E 3 HOH B 99 299 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 CG0 . . . C 2 26.624 8.596 -16.485 1 29.68 ? C13 CG0 200 A 1 HETATM 2 C C15 CG0 . . . C 2 25.846 7.512 -18.622 1 66.43 ? C15 CG0 200 A 1 HETATM 3 C C16 CG0 . . . C 2 25.301 6.179 -19.126 1 78.04 ? C16 CG0 200 A 1 HETATM 4 C C17 CG0 . . . C 2 24.59 7.475 -19.439 1 78.82 ? C17 CG0 200 A 1 HETATM 5 C C01 CG0 . . . C 2 33.859 10.037 -14.553 1 70.35 ? C01 CG0 200 A 1 HETATM 6 C C03 CG0 . . . C 2 32.436 8.429 -14.692 1 63.09 ? C03 CG0 200 A 1 HETATM 7 C C04 CG0 . . . C 2 30.928 8.229 -14.781 1 56.96 ? C04 CG0 200 A 1 HETATM 8 C C06 CG0 . . . C 2 31.034 9.964 -16.561 1 63.22 ? C06 CG0 200 A 1 HETATM 9 C C07 CG0 . . . C 2 32.513 10.079 -16.207 1 69.77 ? C07 CG0 200 A 1 HETATM 10 C C08 CG0 . . . C 2 28.831 9.126 -15.803 1 37.63 ? C08 CG0 200 A 1 HETATM 11 C C10 CG0 . . . C 2 27.013 10.242 -14.9 1 26.36 ? C10 CG0 200 A 1 HETATM 12 C C18 CG0 . . . C 2 28.016 8.354 -16.607 1 29.02 ? C18 CG0 200 A 1 HETATM 13 C C19 CG0 . . . C 2 28.767 7.308 -17.501 1 37.47 ? C19 CG0 200 A 1 HETATM 14 C C20 CG0 . . . C 2 29.261 7.873 -18.852 1 34.98 ? C20 CG0 200 A 1 HETATM 15 N N02 CG0 . . . C 2 32.674 9.757 -14.893 1 69.29 ? N02 CG0 200 A 1 HETATM 16 N N05 CG0 . . . C 2 30.274 8.898 -15.905 1 55.08 ? N05 CG0 200 A 1 HETATM 17 N N09 CG0 . . . C 2 28.327 10.038 -14.982 1 32.16 ? N09 CG0 200 A 1 HETATM 18 N N11 CG0 . . . C 2 26.497 11.261 -13.987 1 16.52 ? N11 CG0 200 A 1 HETATM 19 N N12 CG0 . . . C 2 26.176 9.525 -15.644 1 18.59 ? N12 CG0 200 A 1 HETATM 20 N N14 CG0 . . . C 2 25.605 7.878 -17.236 1 36.13 ? N14 CG0 200 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #