data_6JVM # _model_server_result.job_id jry4wDqPe-KrXueYOYL6bQ _model_server_result.datetime_utc '2025-01-25 12:02:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 6JVM # _exptl.entry_id 6JVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 261.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N4-cyclopropyl-5-ethyl-6-piperidin-1-yl-pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JVM _cell.length_a 59.097 _cell.length_b 67.702 _cell.length_c 79.872 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H23 N5' _chem_comp.formula_weight 261.366 _chem_comp.id CGX _chem_comp.mon_nstd_flag . _chem_comp.name N4-cyclopropyl-5-ethyl-6-piperidin-1-yl-pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAS CAR CGX sing 70 n n CAS CAQ CGX sing 71 n n CAR CAQ CGX sing 72 n n CAK CAJ CGX sing 73 n n CAQ NAP CGX sing 74 n n CAJ C5 CGX sing 75 n n NAP C4 CGX sing 76 n n CAF CAC CGX sing 77 n n CAF NAE CGX sing 78 n n CAC CAB CGX sing 79 n n C5 C4 CGX doub 80 n y C5 C6 CGX sing 81 n y C4 N3 CGX sing 82 n y C6 NAE CGX sing 83 n n C6 N1 CGX doub 84 n y NAE CAD CGX sing 85 n n N3 C2 CGX doub 86 n y CAB CAA CGX sing 87 n n N1 C2 CGX sing 88 n y C2 NAO CGX sing 89 n n CAD CAA CGX sing 90 n n CAA H1 CGX sing 91 n n CAA H2 CGX sing 92 n n CAB H3 CGX sing 93 n n CAB H4 CGX sing 94 n n CAC H5 CGX sing 95 n n CAC H6 CGX sing 96 n n CAD H7 CGX sing 97 n n CAD H8 CGX sing 98 n n CAF H9 CGX sing 99 n n CAF H10 CGX sing 100 n n CAJ H11 CGX sing 101 n n CAJ H12 CGX sing 102 n n CAK H13 CGX sing 103 n n CAK H14 CGX sing 104 n n CAK H15 CGX sing 105 n n CAQ H16 CGX sing 106 n n CAR H17 CGX sing 107 n n CAR H18 CGX sing 108 n n CAS H19 CGX sing 109 n n CAS H20 CGX sing 110 n n NAO H21 CGX sing 111 n n NAO H22 CGX sing 112 n n NAP H23 CGX sing 113 n n # _atom_sites.entry_id 6JVM _atom_sites.fract_transf_matrix[1][1] 0.016921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CGX A 1 200 200 CGX EPD . D 3 HOH A 1 301 200 HOH HOH . D 3 HOH A 2 302 169 HOH HOH . D 3 HOH A 3 303 116 HOH HOH . D 3 HOH A 4 304 91 HOH HOH . D 3 HOH A 5 305 82 HOH HOH . D 3 HOH A 6 306 47 HOH HOH . D 3 HOH A 7 307 104 HOH HOH . D 3 HOH A 8 308 176 HOH HOH . D 3 HOH A 9 309 16 HOH HOH . D 3 HOH A 10 310 109 HOH HOH . D 3 HOH A 11 311 69 HOH HOH . D 3 HOH A 12 312 105 HOH HOH . D 3 HOH A 13 313 43 HOH HOH . D 3 HOH A 14 314 125 HOH HOH . D 3 HOH A 15 315 174 HOH HOH . D 3 HOH A 16 316 70 HOH HOH . D 3 HOH A 17 317 130 HOH HOH . D 3 HOH A 18 318 77 HOH HOH . D 3 HOH A 19 319 122 HOH HOH . D 3 HOH A 20 320 73 HOH HOH . D 3 HOH A 21 321 29 HOH HOH . D 3 HOH A 22 322 6 HOH HOH . D 3 HOH A 23 323 74 HOH HOH . D 3 HOH A 24 324 8 HOH HOH . D 3 HOH A 25 325 90 HOH HOH . D 3 HOH A 26 326 111 HOH HOH . D 3 HOH A 27 327 7 HOH HOH . D 3 HOH A 28 328 1 HOH HOH . D 3 HOH A 29 329 106 HOH HOH . D 3 HOH A 30 330 36 HOH HOH . D 3 HOH A 31 331 121 HOH HOH . D 3 HOH A 32 332 147 HOH HOH . D 3 HOH A 33 333 149 HOH HOH . D 3 HOH A 34 334 52 HOH HOH . D 3 HOH A 35 335 40 HOH HOH . D 3 HOH A 36 336 124 HOH HOH . D 3 HOH A 37 337 93 HOH HOH . D 3 HOH A 38 338 24 HOH HOH . D 3 HOH A 39 339 13 HOH HOH . D 3 HOH A 40 340 3 HOH HOH . D 3 HOH A 41 341 50 HOH HOH . D 3 HOH A 42 342 42 HOH HOH . D 3 HOH A 43 343 71 HOH HOH . D 3 HOH A 44 344 46 HOH HOH . D 3 HOH A 45 345 25 HOH HOH . D 3 HOH A 46 346 96 HOH HOH . D 3 HOH A 47 347 60 HOH HOH . D 3 HOH A 48 348 57 HOH HOH . D 3 HOH A 49 349 26 HOH HOH . D 3 HOH A 50 350 31 HOH HOH . D 3 HOH A 51 351 151 HOH HOH . D 3 HOH A 52 352 21 HOH HOH . D 3 HOH A 53 353 67 HOH HOH . D 3 HOH A 54 354 17 HOH HOH . D 3 HOH A 55 355 4 HOH HOH . D 3 HOH A 56 356 139 HOH HOH . D 3 HOH A 57 357 108 HOH HOH . D 3 HOH A 58 358 140 HOH HOH . D 3 HOH A 59 359 11 HOH HOH . D 3 HOH A 60 360 165 HOH HOH . D 3 HOH A 61 361 44 HOH HOH . D 3 HOH A 62 362 41 HOH HOH . D 3 HOH A 63 363 83 HOH HOH . D 3 HOH A 64 364 145 HOH HOH . D 3 HOH A 65 365 166 HOH HOH . D 3 HOH A 66 366 119 HOH HOH . D 3 HOH A 67 367 175 HOH HOH . D 3 HOH A 68 368 167 HOH HOH . D 3 HOH A 69 369 163 HOH HOH . D 3 HOH A 70 370 97 HOH HOH . D 3 HOH A 71 371 48 HOH HOH . D 3 HOH A 72 372 141 HOH HOH . D 3 HOH A 73 373 10 HOH HOH . D 3 HOH A 74 374 86 HOH HOH . D 3 HOH A 75 375 214 HOH HOH . D 3 HOH A 76 376 117 HOH HOH . D 3 HOH A 77 377 212 HOH HOH . D 3 HOH A 78 378 65 HOH HOH . D 3 HOH A 79 379 155 HOH HOH . D 3 HOH A 80 380 201 HOH HOH . D 3 HOH A 81 381 33 HOH HOH . D 3 HOH A 82 382 14 HOH HOH . D 3 HOH A 83 383 158 HOH HOH . D 3 HOH A 84 384 189 HOH HOH . D 3 HOH A 85 385 66 HOH HOH . D 3 HOH A 86 386 161 HOH HOH . D 3 HOH A 87 387 84 HOH HOH . D 3 HOH A 88 388 193 HOH HOH . D 3 HOH A 89 389 53 HOH HOH . D 3 HOH A 90 390 23 HOH HOH . D 3 HOH A 91 391 85 HOH HOH . D 3 HOH A 92 392 180 HOH HOH . D 3 HOH A 93 393 133 HOH HOH . D 3 HOH A 94 394 170 HOH HOH . D 3 HOH A 95 395 135 HOH HOH . D 3 HOH A 96 396 62 HOH HOH . D 3 HOH A 97 397 136 HOH HOH . D 3 HOH A 98 398 38 HOH HOH . D 3 HOH A 99 399 49 HOH HOH . D 3 HOH A 100 400 118 HOH HOH . D 3 HOH A 101 401 196 HOH HOH . D 3 HOH A 102 402 112 HOH HOH . D 3 HOH A 103 403 208 HOH HOH . D 3 HOH A 104 404 211 HOH HOH . D 3 HOH A 105 405 195 HOH HOH . D 3 HOH A 106 406 123 HOH HOH . D 3 HOH A 107 407 137 HOH HOH . D 3 HOH A 108 408 138 HOH HOH . D 3 HOH A 109 409 190 HOH HOH . D 3 HOH A 110 410 178 HOH HOH . D 3 HOH A 111 411 192 HOH HOH . D 3 HOH A 112 412 103 HOH HOH . D 3 HOH A 113 413 68 HOH HOH . D 3 HOH A 114 414 185 HOH HOH . D 3 HOH A 115 415 173 HOH HOH . D 3 HOH A 116 416 164 HOH HOH . D 3 HOH A 117 417 206 HOH HOH . D 3 HOH A 118 418 113 HOH HOH . E 3 HOH B 1 201 27 HOH HOH . E 3 HOH B 2 202 199 HOH HOH . E 3 HOH B 3 203 142 HOH HOH . E 3 HOH B 4 204 5 HOH HOH . E 3 HOH B 5 205 9 HOH HOH . E 3 HOH B 6 206 19 HOH HOH . E 3 HOH B 7 207 61 HOH HOH . E 3 HOH B 8 208 101 HOH HOH . E 3 HOH B 9 209 213 HOH HOH . E 3 HOH B 10 210 99 HOH HOH . E 3 HOH B 11 211 159 HOH HOH . E 3 HOH B 12 212 179 HOH HOH . E 3 HOH B 13 213 75 HOH HOH . E 3 HOH B 14 214 143 HOH HOH . E 3 HOH B 15 215 80 HOH HOH . E 3 HOH B 16 216 92 HOH HOH . E 3 HOH B 17 217 22 HOH HOH . E 3 HOH B 18 218 28 HOH HOH . E 3 HOH B 19 219 186 HOH HOH . E 3 HOH B 20 220 56 HOH HOH . E 3 HOH B 21 221 156 HOH HOH . E 3 HOH B 22 222 79 HOH HOH . E 3 HOH B 23 223 30 HOH HOH . E 3 HOH B 24 224 81 HOH HOH . E 3 HOH B 25 225 45 HOH HOH . E 3 HOH B 26 226 35 HOH HOH . E 3 HOH B 27 227 87 HOH HOH . E 3 HOH B 28 228 20 HOH HOH . E 3 HOH B 29 229 88 HOH HOH . E 3 HOH B 30 230 63 HOH HOH . E 3 HOH B 31 231 207 HOH HOH . E 3 HOH B 32 232 128 HOH HOH . E 3 HOH B 33 233 172 HOH HOH . E 3 HOH B 34 234 72 HOH HOH . E 3 HOH B 35 235 177 HOH HOH . E 3 HOH B 36 236 37 HOH HOH . E 3 HOH B 37 237 59 HOH HOH . E 3 HOH B 38 238 95 HOH HOH . E 3 HOH B 39 239 110 HOH HOH . E 3 HOH B 40 240 51 HOH HOH . E 3 HOH B 41 241 160 HOH HOH . E 3 HOH B 42 242 127 HOH HOH . E 3 HOH B 43 243 78 HOH HOH . E 3 HOH B 44 244 152 HOH HOH . E 3 HOH B 45 245 148 HOH HOH . E 3 HOH B 46 246 107 HOH HOH . E 3 HOH B 47 247 89 HOH HOH . E 3 HOH B 48 248 54 HOH HOH . E 3 HOH B 49 249 39 HOH HOH . E 3 HOH B 50 250 168 HOH HOH . E 3 HOH B 51 251 64 HOH HOH . E 3 HOH B 52 252 58 HOH HOH . E 3 HOH B 53 253 114 HOH HOH . E 3 HOH B 54 254 12 HOH HOH . E 3 HOH B 55 255 2 HOH HOH . E 3 HOH B 56 256 209 HOH HOH . E 3 HOH B 57 257 132 HOH HOH . E 3 HOH B 58 258 18 HOH HOH . E 3 HOH B 59 259 94 HOH HOH . E 3 HOH B 60 260 181 HOH HOH . E 3 HOH B 61 261 98 HOH HOH . E 3 HOH B 62 262 153 HOH HOH . E 3 HOH B 63 263 15 HOH HOH . E 3 HOH B 64 264 210 HOH HOH . E 3 HOH B 65 265 34 HOH HOH . E 3 HOH B 66 266 171 HOH HOH . E 3 HOH B 67 267 129 HOH HOH . E 3 HOH B 68 268 134 HOH HOH . E 3 HOH B 69 269 197 HOH HOH . E 3 HOH B 70 270 157 HOH HOH . E 3 HOH B 71 271 194 HOH HOH . E 3 HOH B 72 272 115 HOH HOH . E 3 HOH B 73 273 198 HOH HOH . E 3 HOH B 74 274 184 HOH HOH . E 3 HOH B 75 275 188 HOH HOH . E 3 HOH B 76 276 154 HOH HOH . E 3 HOH B 77 277 131 HOH HOH . E 3 HOH B 78 278 202 HOH HOH . E 3 HOH B 79 279 146 HOH HOH . E 3 HOH B 80 280 215 HOH HOH . E 3 HOH B 81 281 100 HOH HOH . E 3 HOH B 82 282 191 HOH HOH . E 3 HOH B 83 283 32 HOH HOH . E 3 HOH B 84 284 120 HOH HOH . E 3 HOH B 85 285 102 HOH HOH . E 3 HOH B 86 286 150 HOH HOH . E 3 HOH B 87 287 55 HOH HOH . E 3 HOH B 88 288 182 HOH HOH . E 3 HOH B 89 289 76 HOH HOH . E 3 HOH B 90 290 144 HOH HOH . E 3 HOH B 91 291 204 HOH HOH . E 3 HOH B 92 292 203 HOH HOH . E 3 HOH B 93 293 162 HOH HOH . E 3 HOH B 94 294 187 HOH HOH . E 3 HOH B 95 295 205 HOH HOH . E 3 HOH B 96 296 183 HOH HOH . E 3 HOH B 97 297 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 CGX . . . C 2 28.128 8.159 -16.63 1 14.98 ? C5 CGX 200 A 1 HETATM 2 C C4 CGX . . . C 2 26.746 8.315 -16.55 1 25.65 ? C4 CGX 200 A 1 HETATM 3 C C2 CGX . . . C 2 26.968 10.137 -15.135 1 17.23 ? C2 CGX 200 A 1 HETATM 4 C C6 CGX . . . C 2 28.925 9.064 -15.921 1 19.83 ? C6 CGX 200 A 1 HETATM 5 C CAA CGX . . . C 2 32.236 8.347 -14.516 1 27.46 ? CAA CGX 200 A 1 HETATM 6 C CAB CGX . . . C 2 33.129 8.514 -15.727 1 22.03 ? CAB CGX 200 A 1 HETATM 7 C CAC CGX . . . C 2 32.339 8.145 -16.968 1 30.11 ? CAC CGX 200 A 1 HETATM 8 C CAD CGX . . . C 2 30.986 9.225 -14.609 1 26.35 ? CAD CGX 200 A 1 HETATM 9 C CAF CGX . . . C 2 31.133 9.088 -17.134 1 31.22 ? CAF CGX 200 A 1 HETATM 10 C CAJ CGX . . . C 2 28.604 7.051 -17.384 1 18.28 ? CAJ CGX 200 A 1 HETATM 11 C CAK CGX . . . C 2 28.743 7.302 -18.878 1 12.97 ? CAK CGX 200 A 1 HETATM 12 C CAQ CGX . . . C 2 25.167 7.256 -18.273 1 58.14 ? CAQ CGX 200 A 1 HETATM 13 C CAR CGX . . . C 2 25.473 5.902 -18.944 1 66.21 ? CAR CGX 200 A 1 HETATM 14 C CAS CGX . . . C 2 25.535 7.116 -19.726 1 65.68 ? CAS CGX 200 A 1 HETATM 15 N N1 CGX . . . C 2 28.304 10.023 -15.213 1 18.23 ? N1 CGX 200 A 1 HETATM 16 N N3 CGX . . . C 2 26.167 9.267 -15.785 1 16.55 ? N3 CGX 200 A 1 HETATM 17 N NAE CGX . . . C 2 30.285 9.071 -15.904 1 28.84 ? NAE CGX 200 A 1 HETATM 18 N NAO CGX . . . C 2 26.469 11.133 -14.4 1 22.41 ? NAO CGX 200 A 1 HETATM 19 N NAP CGX . . . C 2 26.129 7.335 -17.178 1 37.71 ? NAP CGX 200 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #