data_6JW6 # _model_server_result.job_id COMTJGJ8T7ir9heEzxYcGA _model_server_result.datetime_utc '2025-04-08 14:43:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6JW6 # _exptl.entry_id 6JW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JW6 _cell.length_a 119.469 _cell.length_b 119.469 _cell.length_c 131.435 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 87.623333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6JW6 _atom_sites.fract_transf_matrix[1][1] 0.00837 _atom_sites.fract_transf_matrix[1][2] 0.004833 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 401 NAD NAD . D 2 NAD B 1 401 401 NAD NAD . E 3 HOH A 1 501 501 HOH HOH . E 3 HOH A 2 502 502 HOH HOH . E 3 HOH A 3 503 503 HOH HOH . E 3 HOH A 4 504 504 HOH HOH . E 3 HOH A 5 505 505 HOH HOH . E 3 HOH A 6 506 506 HOH HOH . F 3 HOH B 1 501 501 HOH HOH . F 3 HOH B 2 502 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 -55.448 9.363 17.479 1 65.83 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . C 2 -56.661 8.48 17.387 1 63.09 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . C 2 -55.301 9.997 18.825 1 67.49 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . C 2 -55.486 10.586 16.454 1 59.94 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . C 2 -55.713 10.31 15.107 1 59.68 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . C 2 -56.259 11.615 14.582 1 62.07 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . C 2 -56.015 11.693 13.163 1 63.47 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . C 2 -57.751 11.772 14.854 1 59.44 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . C 2 -57.994 13.081 15.377 1 59.26 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . C 2 -58.392 11.586 13.479 1 60.58 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . C 2 -59.608 12.301 13.231 1 53.23 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . C 2 -57.265 12.094 12.595 1 64.64 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . C 2 -57.282 11.545 11.254 1 73.01 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . C 2 -57.577 10.278 10.907 1 69.73 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . C 2 -57.456 10.177 9.569 1 72.47 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . C 2 -57.083 11.361 9.081 1 74.37 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . C 2 -56.798 11.874 7.751 1 75.69 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . C 2 -56.927 10.986 6.741 1 83.59 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . C 2 -56.423 13.163 7.616 1 72.93 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . C 2 -56.342 13.968 8.696 1 76.19 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . C 2 -56.618 13.573 9.967 1 73.32 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . C 2 -56.963 12.284 10.198 1 75.84 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . C 2 -54.064 8.582 17.103 1 62.9 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . C 2 -52.704 8.905 17.941 1 65.56 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . C 2 -52.556 8.049 19.181 1 68.23 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . C 2 -52.473 10.403 18.052 1 71.56 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . C 2 -51.58 8.309 16.957 1 63.73 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . C 2 -51.296 8.912 15.725 1 63.95 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . C 2 -49.934 8.467 15.272 1 67.62 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . C 2 -48.93 8.68 16.265 1 66.5 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . C 2 -49.939 6.98 14.977 1 71.63 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . C 2 -49.282 6.784 13.711 1 78.29 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . C 2 -49.182 6.28 16.086 1 69.08 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . C 2 -48.438 5.164 15.577 1 68.5 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . C 2 -48.292 7.417 16.564 1 69.95 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . C 2 -47.959 7.351 17.993 1 70.47 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . C 2 -46.663 7.501 18.322 1 74.78 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . C 2 -46.207 7.474 19.637 1 70.19 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . C 2 -44.747 7.702 19.966 1 68.87 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . C 2 -44.413 7.894 21.087 1 71.55 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . C 2 -43.775 7.831 19.087 1 77.96 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . C 2 -47.169 7.324 20.636 1 66.47 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . C 2 -48.498 7.176 20.299 1 65.76 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . C 2 -48.884 7.204 18.954 1 68.32 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 44 #