data_6JW6
#
_model_server_result.job_id            XBGdJRLixQOZTszmkie7Uw 
_model_server_result.datetime_utc      '2025-04-06 00:25:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jw6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    6JW6 
#
_exptl.entry_id    6JW6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6JW6 
_cell.length_a            119.469 
_cell.length_b            119.469 
_cell.length_c            131.435 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JW6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 87.623333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     6JW6 
_atom_sites.fract_transf_matrix[1][1]    0.00837 
_atom_sites.fract_transf_matrix[1][2]    0.004833 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009665 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 401 401 NAD NAD . 
D 2 NAD B 1 401 401 NAD NAD . 
E 3 HOH A 1 501 501 HOH HOH . 
E 3 HOH A 2 502 502 HOH HOH . 
E 3 HOH A 3 503 503 HOH HOH . 
E 3 HOH A 4 504 504 HOH HOH . 
E 3 HOH A 5 505 505 HOH HOH . 
E 3 HOH A 6 506 506 HOH HOH . 
F 3 HOH B 1 501 501 HOH HOH . 
F 3 HOH B 2 502 502 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 2 -17.209 27.437 45.206 1 90.84 ? PA NAD 401 B 1 
HETATM 2 O O1A NAD . . . D 2 -16.199 27.494 46.328 1 88.4 ? O1A NAD 401 B 1 
HETATM 3 O O2A NAD . . . D 2 -17.213 26.272 44.226 1 95.81 ? O2A NAD 401 B 1 
HETATM 4 O O5B NAD . . . D 2 -17.262 28.813 44.37 1 84.49 ? O5B NAD 401 B 1 
HETATM 5 C C5B NAD . . . D 2 -17.08 30.054 45.039 1 88.03 ? C5B NAD 401 B 1 
HETATM 6 C C4B NAD . . . D 2 -16.181 30.918 44.153 1 92.98 ? C4B NAD 401 B 1 
HETATM 7 O O4B NAD . . . D 2 -16.301 32.281 44.585 1 93.35 ? O4B NAD 401 B 1 
HETATM 8 C C3B NAD . . . D 2 -14.704 30.504 44.194 1 95.06 ? C3B NAD 401 B 1 
HETATM 9 O O3B NAD . . . D 2 -14.135 30.415 42.873 1 93.22 ? O3B NAD 401 B 1 
HETATM 10 C C2B NAD . . . D 2 -14.04 31.618 44.965 1 97.19 ? C2B NAD 401 B 1 
HETATM 11 O O2B NAD . . . D 2 -12.745 31.819 44.418 1 92.6 ? O2B NAD 401 B 1 
HETATM 12 C C1B NAD . . . D 2 -14.984 32.804 44.713 1 97.25 ? C1B NAD 401 B 1 
HETATM 13 N N9A NAD . . . D 2 -14.888 33.932 45.679 1 94.8 ? N9A NAD 401 B 1 
HETATM 14 C C8A NAD . . . D 2 -14.409 33.964 46.953 1 94.46 ? C8A NAD 401 B 1 
HETATM 15 N N7A NAD . . . D 2 -14.47 35.253 47.456 1 90.04 ? N7A NAD 401 B 1 
HETATM 16 C C5A NAD . . . D 2 -15.003 36.042 46.493 1 88.53 ? C5A NAD 401 B 1 
HETATM 17 C C6A NAD . . . D 2 -15.327 37.464 46.31 1 83.52 ? C6A NAD 401 B 1 
HETATM 18 N N6A NAD . . . D 2 -15.098 38.306 47.291 1 84.83 ? N6A NAD 401 B 1 
HETATM 19 N N1A NAD . . . D 2 -15.85 37.916 45.165 1 84.93 ? N1A NAD 401 B 1 
HETATM 20 C C2A NAD . . . D 2 -16.074 37.061 44.156 1 90.37 ? C2A NAD 401 B 1 
HETATM 21 N N3A NAD . . . D 2 -15.787 35.744 44.222 1 92.81 ? N3A NAD 401 B 1 
HETATM 22 C C4A NAD . . . D 2 -15.266 35.174 45.335 1 93.15 ? C4A NAD 401 B 1 
HETATM 23 O O3 NAD . . . D 2 -18.624 27.465 46.026 1 98.1 ? O3 NAD 401 B 1 
HETATM 24 P PN NAD . . . D 2 -20.057 26.904 45.489 1 84.23 ? PN NAD 401 B 1 
HETATM 25 O O1N NAD . . . D 2 -20.062 25.478 46.023 1 85.7 ? O1N NAD 401 B 1 
HETATM 26 O O2N NAD . . . D 2 -20.022 27.279 43.981 1 87.51 ? O2N NAD 401 B 1 
HETATM 27 O O5D NAD . . . D 2 -21.19 27.736 46.322 1 79.74 ? O5D NAD 401 B 1 
HETATM 28 C C5D NAD . . . D 2 -21.519 29.121 46.134 1 80.44 ? C5D NAD 401 B 1 
HETATM 29 C C4D NAD . . . D 2 -22.86 29.442 46.783 1 84.5 ? C4D NAD 401 B 1 
HETATM 30 O O4D NAD . . . D 2 -23.9 28.536 46.347 1 94.28 ? O4D NAD 401 B 1 
HETATM 31 C C3D NAD . . . D 2 -22.836 29.325 48.304 1 86.49 ? C3D NAD 401 B 1 
HETATM 32 O O3D NAD . . . D 2 -23.5 30.466 48.879 1 86.03 ? O3D NAD 401 B 1 
HETATM 33 C C2D NAD . . . D 2 -23.586 28.035 48.664 1 86.49 ? C2D NAD 401 B 1 
HETATM 34 O O2D NAD . . . D 2 -24.295 28.223 49.901 1 70.73 ? O2D NAD 401 B 1 
HETATM 35 C C1D NAD . . . D 2 -24.478 27.761 47.432 1 91.69 ? C1D NAD 401 B 1 
HETATM 36 N N1N NAD . . . D 2 -24.653 26.345 46.98 1 96.65 ? N1N NAD 401 B 1 
HETATM 37 C C2N NAD . . . D 2 -25.89 25.983 46.607 1 101.15 ? C2N NAD 401 B 1 
HETATM 38 C C3N NAD . . . D 2 -26.204 24.693 46.159 1 99.39 ? C3N NAD 401 B 1 
HETATM 39 C C7N NAD . . . D 2 -27.632 24.368 45.761 1 98.17 ? C7N NAD 401 B 1 
HETATM 40 O O7N NAD . . . D 2 -28.011 23.22 45.831 1 108.98 ? O7N NAD 401 B 1 
HETATM 41 N N7N NAD . . . D 2 -28.499 25.29 45.314 1 94.78 ? N7N NAD 401 B 1 
HETATM 42 C C4N NAD . . . D 2 -25.184 23.738 46.077 1 96.85 ? C4N NAD 401 B 1 
HETATM 43 C C5N NAD . . . D 2 -23.897 24.12 46.44 1 97.09 ? C5N NAD 401 B 1 
HETATM 44 C C6N NAD . . . D 2 -23.656 25.428 46.896 1 96.64 ? C6N NAD 401 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#