data_6JW7 # _model_server_result.job_id Fb8Y6PpFLpFUWnaDieEP5A _model_server_result.datetime_utc '2025-04-27 01:22:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6JW7 # _exptl.entry_id 6JW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JW7 _cell.length_a 120.01 _cell.length_b 120.01 _cell.length_c 132.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 88.573333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 307 n n PA O2A NAI sing 308 n n PA O5B NAI sing 309 n n PA O3 NAI sing 310 n n O2A HOA2 NAI sing 311 n n O5B C5B NAI sing 312 n n C5B C4B NAI sing 313 n n C5B H51A NAI sing 314 n n C5B H52A NAI sing 315 n n C4B O4B NAI sing 316 n n C4B C3B NAI sing 317 n n C4B H4B NAI sing 318 n n O4B C1B NAI sing 319 n n C3B O3B NAI sing 320 n n C3B C2B NAI sing 321 n n C3B H3B NAI sing 322 n n O3B HO3A NAI sing 323 n n C2B O2B NAI sing 324 n n C2B C1B NAI sing 325 n n C2B H2B NAI sing 326 n n O2B HO2A NAI sing 327 n n C1B N9A NAI sing 328 n n C1B H1B NAI sing 329 n n N9A C8A NAI sing 330 n y N9A C4A NAI sing 331 n y C8A N7A NAI doub 332 n y C8A H8A NAI sing 333 n n N7A C5A NAI sing 334 n y C5A C6A NAI sing 335 n y C5A C4A NAI doub 336 n y C6A N6A NAI sing 337 n n C6A N1A NAI doub 338 n y N6A H61A NAI sing 339 n n N6A H62A NAI sing 340 n n N1A C2A NAI sing 341 n y C2A N3A NAI doub 342 n y C2A H2A NAI sing 343 n n N3A C4A NAI sing 344 n y O3 PN NAI sing 345 n n PN O1N NAI sing 346 n n PN O2N NAI doub 347 n n PN O5D NAI sing 348 n n O1N HO1N NAI sing 349 n n O5D C5D NAI sing 350 n n C5D C4D NAI sing 351 n n C5D H51N NAI sing 352 n n C5D H52N NAI sing 353 n n C4D O4D NAI sing 354 n n C4D C3D NAI sing 355 n n C4D H4D NAI sing 356 n n O4D C1D NAI sing 357 n n C3D O3D NAI sing 358 n n C3D C2D NAI sing 359 n n C3D H3D NAI sing 360 n n O3D HO3N NAI sing 361 n n C2D O2D NAI sing 362 n n C2D C1D NAI sing 363 n n C2D H2D NAI sing 364 n n O2D HO2N NAI sing 365 n n C1D N1N NAI sing 366 n n C1D H1D NAI sing 367 n n N1N C2N NAI sing 368 n n N1N C6N NAI sing 369 n n C2N C3N NAI doub 370 n n C2N H2N NAI sing 371 n n C3N C7N NAI sing 372 n n C3N C4N NAI sing 373 n n C7N O7N NAI doub 374 n n C7N N7N NAI sing 375 n n N7N H71N NAI sing 376 n n N7N H72N NAI sing 377 n n C4N C5N NAI sing 378 n n C4N H4N NAI sing 379 n n C4N H42N NAI sing 380 n n C5N C6N NAI doub 381 n n C5N H5N NAI sing 382 n n C6N H6N NAI sing 383 n n # _atom_sites.entry_id 6JW7 _atom_sites.fract_transf_matrix[1][1] 0.008333 _atom_sites.fract_transf_matrix[1][2] 0.004811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 401 401 NAI NAI . D 3 CJX A 1 402 402 CJX DRG . E 2 NAI B 1 401 401 NAI NAI . F 4 HOH A 1 501 48 HOH HOH . F 4 HOH A 2 502 21 HOH HOH . F 4 HOH A 3 503 15 HOH HOH . F 4 HOH A 4 504 16 HOH HOH . F 4 HOH A 5 505 58 HOH HOH . F 4 HOH A 6 506 28 HOH HOH . F 4 HOH A 7 507 38 HOH HOH . F 4 HOH A 8 508 2 HOH HOH . F 4 HOH A 9 509 35 HOH HOH . F 4 HOH A 10 510 25 HOH HOH . F 4 HOH A 11 511 49 HOH HOH . F 4 HOH A 12 512 8 HOH HOH . F 4 HOH A 13 513 27 HOH HOH . F 4 HOH A 14 514 47 HOH HOH . F 4 HOH A 15 515 31 HOH HOH . F 4 HOH A 16 516 40 HOH HOH . F 4 HOH A 17 517 29 HOH HOH . F 4 HOH A 18 518 33 HOH HOH . F 4 HOH A 19 519 36 HOH HOH . F 4 HOH A 20 520 22 HOH HOH . F 4 HOH A 21 521 59 HOH HOH . F 4 HOH A 22 522 44 HOH HOH . F 4 HOH A 23 523 6 HOH HOH . F 4 HOH A 24 524 34 HOH HOH . F 4 HOH A 25 525 46 HOH HOH . F 4 HOH A 26 526 1 HOH HOH . F 4 HOH A 27 527 32 HOH HOH . F 4 HOH A 28 528 11 HOH HOH . F 4 HOH A 29 529 45 HOH HOH . F 4 HOH A 30 530 54 HOH HOH . F 4 HOH A 31 531 53 HOH HOH . G 4 HOH B 1 501 12 HOH HOH . G 4 HOH B 2 502 30 HOH HOH . G 4 HOH B 3 503 3 HOH HOH . G 4 HOH B 4 504 19 HOH HOH . G 4 HOH B 5 505 26 HOH HOH . G 4 HOH B 6 506 4 HOH HOH . G 4 HOH B 7 507 23 HOH HOH . G 4 HOH B 8 508 57 HOH HOH . G 4 HOH B 9 509 5 HOH HOH . G 4 HOH B 10 510 7 HOH HOH . G 4 HOH B 11 511 24 HOH HOH . G 4 HOH B 12 512 13 HOH HOH . G 4 HOH B 13 513 10 HOH HOH . G 4 HOH B 14 514 55 HOH HOH . G 4 HOH B 15 515 39 HOH HOH . G 4 HOH B 16 516 20 HOH HOH . G 4 HOH B 17 517 51 HOH HOH . G 4 HOH B 18 518 42 HOH HOH . G 4 HOH B 19 519 14 HOH HOH . G 4 HOH B 20 520 9 HOH HOH . G 4 HOH B 21 521 17 HOH HOH . G 4 HOH B 22 522 60 HOH HOH . G 4 HOH B 23 523 41 HOH HOH . G 4 HOH B 24 524 18 HOH HOH . G 4 HOH B 25 525 37 HOH HOH . G 4 HOH B 26 526 56 HOH HOH . G 4 HOH B 27 527 50 HOH HOH . G 4 HOH B 28 528 43 HOH HOH . G 4 HOH B 29 529 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . C 2 56.03 -9.676 17.916 1 41.33 ? PA NAI 401 A 1 HETATM 2 O O1A NAI . . . C 2 56.79 -8.495 17.654 1 41.91 ? O1A NAI 401 A 1 HETATM 3 O O2A NAI . . . C 2 56.351 -10.312 19.276 1 44.45 ? O2A NAI 401 A 1 HETATM 4 O O5B NAI . . . C 2 56.493 -10.777 16.837 1 43.21 ? O5B NAI 401 A 1 HETATM 5 C C5B NAI . . . C 2 56.17 -10.851 15.469 1 43.14 ? C5B NAI 401 A 1 HETATM 6 C C4B NAI . . . C 2 56.882 -12.068 14.878 1 42.96 ? C4B NAI 401 A 1 HETATM 7 O O4B NAI . . . C 2 56.797 -12.003 13.46 1 45.23 ? O4B NAI 401 A 1 HETATM 8 C C3B NAI . . . C 2 58.364 -12.19 15.217 1 43.61 ? C3B NAI 401 A 1 HETATM 9 O O3B NAI . . . C 2 58.741 -13.52 15.659 1 44.58 ? O3B NAI 401 A 1 HETATM 10 C C2B NAI . . . C 2 59.064 -11.885 13.911 1 43.88 ? C2B NAI 401 A 1 HETATM 11 O O2B NAI . . . C 2 60.32 -12.543 13.825 1 42.79 ? O2B NAI 401 A 1 HETATM 12 C C1B NAI . . . C 2 58.054 -12.402 12.908 1 44.71 ? C1B NAI 401 A 1 HETATM 13 N N9A NAI . . . C 2 58 -11.792 11.601 1 47.02 ? N9A NAI 401 A 1 HETATM 14 C C8A NAI . . . C 2 58.187 -10.48 11.292 1 45.27 ? C8A NAI 401 A 1 HETATM 15 N N7A NAI . . . C 2 57.947 -10.339 9.983 1 46.42 ? N7A NAI 401 A 1 HETATM 16 C C5A NAI . . . C 2 57.651 -11.525 9.42 1 48.26 ? C5A NAI 401 A 1 HETATM 17 C C6A NAI . . . C 2 57.302 -12.023 8.08 1 52.07 ? C6A NAI 401 A 1 HETATM 18 N N6A NAI . . . C 2 57.278 -11.148 7.032 1 52.91 ? N6A NAI 401 A 1 HETATM 19 N N1A NAI . . . C 2 57.003 -13.323 7.927 1 50.8 ? N1A NAI 401 A 1 HETATM 20 C C2A NAI . . . C 2 57.044 -14.148 8.982 1 50.71 ? C2A NAI 401 A 1 HETATM 21 N N3A NAI . . . C 2 57.359 -13.752 10.211 1 49.12 ? N3A NAI 401 A 1 HETATM 22 C C4A NAI . . . C 2 57.641 -12.483 10.501 1 49.36 ? C4A NAI 401 A 1 HETATM 23 O O3 NAI . . . C 2 54.426 -10.07 18.086 1 50.03 ? O3 NAI 401 A 1 HETATM 24 P PN NAI . . . C 2 53.202 -9.201 18.54 1 44.31 ? PN NAI 401 A 1 HETATM 25 O O1N NAI . . . C 2 54.11 -8.45 17.581 1 42.55 ? O1N NAI 401 A 1 HETATM 26 O O2N NAI . . . C 2 53.319 -8.265 19.724 1 46.4 ? O2N NAI 401 A 1 HETATM 27 O O5D NAI . . . C 2 52.038 -8.639 17.52 1 48.05 ? O5D NAI 401 A 1 HETATM 28 C C5D NAI . . . C 2 51.749 -9.206 16.237 1 41.86 ? C5D NAI 401 A 1 HETATM 29 C C4D NAI . . . C 2 50.425 -8.633 15.849 1 40.98 ? C4D NAI 401 A 1 HETATM 30 O O4D NAI . . . C 2 49.444 -8.765 16.85 1 39.27 ? O4D NAI 401 A 1 HETATM 31 C C3D NAI . . . C 2 50.53 -7.141 15.634 1 41.44 ? C3D NAI 401 A 1 HETATM 32 O O3D NAI . . . C 2 49.888 -6.978 14.365 1 37.95 ? O3D NAI 401 A 1 HETATM 33 C C2D NAI . . . C 2 49.739 -6.358 16.664 1 40.75 ? C2D NAI 401 A 1 HETATM 34 O O2D NAI . . . C 2 48.859 -5.361 16.089 1 39.03 ? O2D NAI 401 A 1 HETATM 35 C C1D NAI . . . C 2 48.845 -7.495 17.168 1 42.33 ? C1D NAI 401 A 1 HETATM 36 N N1N NAI . . . C 2 48.551 -7.481 18.639 1 42.97 ? N1N NAI 401 A 1 HETATM 37 C C2N NAI . . . C 2 47.26 -7.651 18.953 1 42.98 ? C2N NAI 401 A 1 HETATM 38 C C3N NAI . . . C 2 46.859 -7.739 20.239 1 45.97 ? C3N NAI 401 A 1 HETATM 39 C C7N NAI . . . C 2 45.399 -7.894 20.659 1 46.03 ? C7N NAI 401 A 1 HETATM 40 O O7N NAI . . . C 2 45.149 -7.668 21.831 1 52.55 ? O7N NAI 401 A 1 HETATM 41 N N7N NAI . . . C 2 44.396 -8.292 19.897 1 44.57 ? N7N NAI 401 A 1 HETATM 42 C C4N NAI . . . C 2 47.934 -7.641 21.315 1 45.13 ? C4N NAI 401 A 1 HETATM 43 C C5N NAI . . . C 2 49.298 -7.445 20.849 1 44.72 ? C5N NAI 401 A 1 HETATM 44 C C6N NAI . . . C 2 49.563 -7.395 19.51 1 41.88 ? C6N NAI 401 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 623 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #