data_6JW7 # _model_server_result.job_id aI2AwK0hrxZlaCfEvfxT8g _model_server_result.datetime_utc '2025-07-05 12:03:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6JW7 # _exptl.entry_id 6JW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JW7 _cell.length_a 120.01 _cell.length_b 120.01 _cell.length_c 132.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 88.573333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 307 n n PA O2A NAI sing 308 n n PA O5B NAI sing 309 n n PA O3 NAI sing 310 n n O2A HOA2 NAI sing 311 n n O5B C5B NAI sing 312 n n C5B C4B NAI sing 313 n n C5B H51A NAI sing 314 n n C5B H52A NAI sing 315 n n C4B O4B NAI sing 316 n n C4B C3B NAI sing 317 n n C4B H4B NAI sing 318 n n O4B C1B NAI sing 319 n n C3B O3B NAI sing 320 n n C3B C2B NAI sing 321 n n C3B H3B NAI sing 322 n n O3B HO3A NAI sing 323 n n C2B O2B NAI sing 324 n n C2B C1B NAI sing 325 n n C2B H2B NAI sing 326 n n O2B HO2A NAI sing 327 n n C1B N9A NAI sing 328 n n C1B H1B NAI sing 329 n n N9A C8A NAI sing 330 n y N9A C4A NAI sing 331 n y C8A N7A NAI doub 332 n y C8A H8A NAI sing 333 n n N7A C5A NAI sing 334 n y C5A C6A NAI sing 335 n y C5A C4A NAI doub 336 n y C6A N6A NAI sing 337 n n C6A N1A NAI doub 338 n y N6A H61A NAI sing 339 n n N6A H62A NAI sing 340 n n N1A C2A NAI sing 341 n y C2A N3A NAI doub 342 n y C2A H2A NAI sing 343 n n N3A C4A NAI sing 344 n y O3 PN NAI sing 345 n n PN O1N NAI sing 346 n n PN O2N NAI doub 347 n n PN O5D NAI sing 348 n n O1N HO1N NAI sing 349 n n O5D C5D NAI sing 350 n n C5D C4D NAI sing 351 n n C5D H51N NAI sing 352 n n C5D H52N NAI sing 353 n n C4D O4D NAI sing 354 n n C4D C3D NAI sing 355 n n C4D H4D NAI sing 356 n n O4D C1D NAI sing 357 n n C3D O3D NAI sing 358 n n C3D C2D NAI sing 359 n n C3D H3D NAI sing 360 n n O3D HO3N NAI sing 361 n n C2D O2D NAI sing 362 n n C2D C1D NAI sing 363 n n C2D H2D NAI sing 364 n n O2D HO2N NAI sing 365 n n C1D N1N NAI sing 366 n n C1D H1D NAI sing 367 n n N1N C2N NAI sing 368 n n N1N C6N NAI sing 369 n n C2N C3N NAI doub 370 n n C2N H2N NAI sing 371 n n C3N C7N NAI sing 372 n n C3N C4N NAI sing 373 n n C7N O7N NAI doub 374 n n C7N N7N NAI sing 375 n n N7N H71N NAI sing 376 n n N7N H72N NAI sing 377 n n C4N C5N NAI sing 378 n n C4N H4N NAI sing 379 n n C4N H42N NAI sing 380 n n C5N C6N NAI doub 381 n n C5N H5N NAI sing 382 n n C6N H6N NAI sing 383 n n # _atom_sites.entry_id 6JW7 _atom_sites.fract_transf_matrix[1][1] 0.008333 _atom_sites.fract_transf_matrix[1][2] 0.004811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 401 401 NAI NAI . D 3 CJX A 1 402 402 CJX DRG . E 2 NAI B 1 401 401 NAI NAI . F 4 HOH A 1 501 48 HOH HOH . F 4 HOH A 2 502 21 HOH HOH . F 4 HOH A 3 503 15 HOH HOH . F 4 HOH A 4 504 16 HOH HOH . F 4 HOH A 5 505 58 HOH HOH . F 4 HOH A 6 506 28 HOH HOH . F 4 HOH A 7 507 38 HOH HOH . F 4 HOH A 8 508 2 HOH HOH . F 4 HOH A 9 509 35 HOH HOH . F 4 HOH A 10 510 25 HOH HOH . F 4 HOH A 11 511 49 HOH HOH . F 4 HOH A 12 512 8 HOH HOH . F 4 HOH A 13 513 27 HOH HOH . F 4 HOH A 14 514 47 HOH HOH . F 4 HOH A 15 515 31 HOH HOH . F 4 HOH A 16 516 40 HOH HOH . F 4 HOH A 17 517 29 HOH HOH . F 4 HOH A 18 518 33 HOH HOH . F 4 HOH A 19 519 36 HOH HOH . F 4 HOH A 20 520 22 HOH HOH . F 4 HOH A 21 521 59 HOH HOH . F 4 HOH A 22 522 44 HOH HOH . F 4 HOH A 23 523 6 HOH HOH . F 4 HOH A 24 524 34 HOH HOH . F 4 HOH A 25 525 46 HOH HOH . F 4 HOH A 26 526 1 HOH HOH . F 4 HOH A 27 527 32 HOH HOH . F 4 HOH A 28 528 11 HOH HOH . F 4 HOH A 29 529 45 HOH HOH . F 4 HOH A 30 530 54 HOH HOH . F 4 HOH A 31 531 53 HOH HOH . G 4 HOH B 1 501 12 HOH HOH . G 4 HOH B 2 502 30 HOH HOH . G 4 HOH B 3 503 3 HOH HOH . G 4 HOH B 4 504 19 HOH HOH . G 4 HOH B 5 505 26 HOH HOH . G 4 HOH B 6 506 4 HOH HOH . G 4 HOH B 7 507 23 HOH HOH . G 4 HOH B 8 508 57 HOH HOH . G 4 HOH B 9 509 5 HOH HOH . G 4 HOH B 10 510 7 HOH HOH . G 4 HOH B 11 511 24 HOH HOH . G 4 HOH B 12 512 13 HOH HOH . G 4 HOH B 13 513 10 HOH HOH . G 4 HOH B 14 514 55 HOH HOH . G 4 HOH B 15 515 39 HOH HOH . G 4 HOH B 16 516 20 HOH HOH . G 4 HOH B 17 517 51 HOH HOH . G 4 HOH B 18 518 42 HOH HOH . G 4 HOH B 19 519 14 HOH HOH . G 4 HOH B 20 520 9 HOH HOH . G 4 HOH B 21 521 17 HOH HOH . G 4 HOH B 22 522 60 HOH HOH . G 4 HOH B 23 523 41 HOH HOH . G 4 HOH B 24 524 18 HOH HOH . G 4 HOH B 25 525 37 HOH HOH . G 4 HOH B 26 526 56 HOH HOH . G 4 HOH B 27 527 50 HOH HOH . G 4 HOH B 28 528 43 HOH HOH . G 4 HOH B 29 529 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . E 2 17.369 -27.44 45.585 1 64.68 ? PA NAI 401 B 1 HETATM 2 O O1A NAI . . . E 2 16.31 -27.347 46.668 1 58.24 ? O1A NAI 401 B 1 HETATM 3 O O2A NAI . . . E 2 17.541 -26.32 44.538 1 66.59 ? O2A NAI 401 B 1 HETATM 4 O O5B NAI . . . E 2 17.118 -28.833 44.861 1 61.69 ? O5B NAI 401 B 1 HETATM 5 C C5B NAI . . . E 2 17.29 -30.095 45.491 1 61.47 ? C5B NAI 401 B 1 HETATM 6 C C4B NAI . . . E 2 16.475 -31.107 44.653 1 63.17 ? C4B NAI 401 B 1 HETATM 7 O O4B NAI . . . E 2 16.48 -32.47 45.143 1 61.95 ? O4B NAI 401 B 1 HETATM 8 C C3B NAI . . . E 2 15.006 -30.711 44.553 1 64.16 ? C3B NAI 401 B 1 HETATM 9 O O3B NAI . . . E 2 14.675 -30.622 43.163 1 68.81 ? O3B NAI 401 B 1 HETATM 10 C C2B NAI . . . E 2 14.261 -31.825 45.231 1 62.28 ? C2B NAI 401 B 1 HETATM 11 O O2B NAI . . . E 2 13.003 -32.005 44.609 1 64.71 ? O2B NAI 401 B 1 HETATM 12 C C1B NAI . . . E 2 15.163 -33.02 45.002 1 62.49 ? C1B NAI 401 B 1 HETATM 13 N N9A NAI . . . E 2 14.993 -34.175 45.944 1 65.07 ? N9A NAI 401 B 1 HETATM 14 C C8A NAI . . . E 2 14.527 -34.181 47.239 1 64.64 ? C8A NAI 401 B 1 HETATM 15 N N7A NAI . . . E 2 14.593 -35.446 47.76 1 65.23 ? N7A NAI 401 B 1 HETATM 16 C C5A NAI . . . E 2 15.076 -36.239 46.795 1 61.27 ? C5A NAI 401 B 1 HETATM 17 C C6A NAI . . . E 2 15.357 -37.646 46.679 1 60.49 ? C6A NAI 401 B 1 HETATM 18 N N6A NAI . . . E 2 15.096 -38.415 47.732 1 60.38 ? N6A NAI 401 B 1 HETATM 19 N N1A NAI . . . E 2 15.859 -38.134 45.539 1 59.43 ? N1A NAI 401 B 1 HETATM 20 C C2A NAI . . . E 2 16.084 -37.316 44.498 1 60.53 ? C2A NAI 401 B 1 HETATM 21 N N3A NAI . . . E 2 15.855 -35.987 44.517 1 60.4 ? N3A NAI 401 B 1 HETATM 22 C C4A NAI . . . E 2 15.345 -35.419 45.619 1 61.91 ? C4A NAI 401 B 1 HETATM 23 O O3 NAI . . . E 2 18.775 -27.653 46.316 1 62.14 ? O3 NAI 401 B 1 HETATM 24 P PN NAI . . . E 2 20.177 -27.04 45.872 1 61.33 ? PN NAI 401 B 1 HETATM 25 O O1N NAI . . . E 2 20.238 -25.609 46.345 1 59.3 ? O1N NAI 401 B 1 HETATM 26 O O2N NAI . . . E 2 20.383 -27.507 44.421 1 69.71 ? O2N NAI 401 B 1 HETATM 27 O O5D NAI . . . E 2 21.186 -27.882 46.813 1 56.9 ? O5D NAI 401 B 1 HETATM 28 C C5D NAI . . . E 2 21.575 -29.212 46.474 1 54.67 ? C5D NAI 401 B 1 HETATM 29 C C4D NAI . . . E 2 22.91 -29.459 47.144 1 52.79 ? C4D NAI 401 B 1 HETATM 30 O O4D NAI . . . E 2 23.856 -28.493 46.658 1 54.9 ? O4D NAI 401 B 1 HETATM 31 C C3D NAI . . . E 2 22.903 -29.264 48.653 1 54.21 ? C3D NAI 401 B 1 HETATM 32 O O3D NAI . . . E 2 23.674 -30.311 49.243 1 50.78 ? O3D NAI 401 B 1 HETATM 33 C C2D NAI . . . E 2 23.611 -27.941 48.941 1 54.36 ? C2D NAI 401 B 1 HETATM 34 O O2D NAI . . . E 2 24.411 -28.105 50.09 1 53.94 ? O2D NAI 401 B 1 HETATM 35 C C1D NAI . . . E 2 24.523 -27.739 47.713 1 55.84 ? C1D NAI 401 B 1 HETATM 36 N N1N NAI . . . E 2 24.814 -26.346 47.266 1 53.65 ? N1N NAI 401 B 1 HETATM 37 C C2N NAI . . . E 2 26.079 -26.064 46.926 1 53.04 ? C2N NAI 401 B 1 HETATM 38 C C3N NAI . . . E 2 26.488 -24.799 46.502 1 54.55 ? C3N NAI 401 B 1 HETATM 39 C C7N NAI . . . E 2 27.917 -24.529 46.077 1 56.3 ? C7N NAI 401 B 1 HETATM 40 O O7N NAI . . . E 2 28.301 -23.386 45.904 1 61.08 ? O7N NAI 401 B 1 HETATM 41 N N7N NAI . . . E 2 28.774 -25.508 45.771 1 58.49 ? N7N NAI 401 B 1 HETATM 42 C C4N NAI . . . E 2 25.448 -23.692 46.345 1 56.3 ? C4N NAI 401 B 1 HETATM 43 C C5N NAI . . . E 2 24.092 -24.113 46.719 1 56.92 ? C5N NAI 401 B 1 HETATM 44 C C6N NAI . . . E 2 23.841 -25.42 47.163 1 56.2 ? C6N NAI 401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #