data_6JW8
#
_model_server_result.job_id            BnEviu9RXBkbl_GtAr3JAw 
_model_server_result.datetime_utc      '2025-04-10 22:17:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jw8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6JW8 
#
_exptl.entry_id    6JW8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6JW8 
_cell.length_a            119.761 
_cell.length_b            119.761 
_cell.length_c            132.904 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JW8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -44.301333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 308 n n 
PA O2A NAI sing 309 n n 
PA O5B NAI sing 310 n n 
PA O3 NAI sing 311 n n 
O2A HOA2 NAI sing 312 n n 
O5B C5B NAI sing 313 n n 
C5B C4B NAI sing 314 n n 
C5B H51A NAI sing 315 n n 
C5B H52A NAI sing 316 n n 
C4B O4B NAI sing 317 n n 
C4B C3B NAI sing 318 n n 
C4B H4B NAI sing 319 n n 
O4B C1B NAI sing 320 n n 
C3B O3B NAI sing 321 n n 
C3B C2B NAI sing 322 n n 
C3B H3B NAI sing 323 n n 
O3B HO3A NAI sing 324 n n 
C2B O2B NAI sing 325 n n 
C2B C1B NAI sing 326 n n 
C2B H2B NAI sing 327 n n 
O2B HO2A NAI sing 328 n n 
C1B N9A NAI sing 329 n n 
C1B H1B NAI sing 330 n n 
N9A C8A NAI sing 331 n y 
N9A C4A NAI sing 332 n y 
C8A N7A NAI doub 333 n y 
C8A H8A NAI sing 334 n n 
N7A C5A NAI sing 335 n y 
C5A C6A NAI sing 336 n y 
C5A C4A NAI doub 337 n y 
C6A N6A NAI sing 338 n n 
C6A N1A NAI doub 339 n y 
N6A H61A NAI sing 340 n n 
N6A H62A NAI sing 341 n n 
N1A C2A NAI sing 342 n y 
C2A N3A NAI doub 343 n y 
C2A H2A NAI sing 344 n n 
N3A C4A NAI sing 345 n y 
O3 PN NAI sing 346 n n 
PN O1N NAI sing 347 n n 
PN O2N NAI doub 348 n n 
PN O5D NAI sing 349 n n 
O1N HO1N NAI sing 350 n n 
O5D C5D NAI sing 351 n n 
C5D C4D NAI sing 352 n n 
C5D H51N NAI sing 353 n n 
C5D H52N NAI sing 354 n n 
C4D O4D NAI sing 355 n n 
C4D C3D NAI sing 356 n n 
C4D H4D NAI sing 357 n n 
O4D C1D NAI sing 358 n n 
C3D O3D NAI sing 359 n n 
C3D C2D NAI sing 360 n n 
C3D H3D NAI sing 361 n n 
O3D HO3N NAI sing 362 n n 
C2D O2D NAI sing 363 n n 
C2D C1D NAI sing 364 n n 
C2D H2D NAI sing 365 n n 
O2D HO2N NAI sing 366 n n 
C1D N1N NAI sing 367 n n 
C1D H1D NAI sing 368 n n 
N1N C2N NAI sing 369 n n 
N1N C6N NAI sing 370 n n 
C2N C3N NAI doub 371 n n 
C2N H2N NAI sing 372 n n 
C3N C7N NAI sing 373 n n 
C3N C4N NAI sing 374 n n 
C7N O7N NAI doub 375 n n 
C7N N7N NAI sing 376 n n 
N7N H71N NAI sing 377 n n 
N7N H72N NAI sing 378 n n 
C4N C5N NAI sing 379 n n 
C4N H4N NAI sing 380 n n 
C4N H42N NAI sing 381 n n 
C5N C6N NAI doub 382 n n 
C5N H5N NAI sing 383 n n 
C6N H6N NAI sing 384 n n 
#
_atom_sites.entry_id                     6JW8 
_atom_sites.fract_transf_matrix[1][1]    0.00835 
_atom_sites.fract_transf_matrix[1][2]    0.004821 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007524 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAI A 1 401 401 NAI NAI . 
D 3 CK0 A 1 402 402 CK0 DRG . 
E 2 NAI B 1 401 401 NAI NAI . 
F 4 HOH A 1 501 18 HOH HOH . 
F 4 HOH A 2 502 22 HOH HOH . 
F 4 HOH A 3 503 27 HOH HOH . 
F 4 HOH A 4 504 10 HOH HOH . 
F 4 HOH A 5 505 21 HOH HOH . 
F 4 HOH A 6 506 26 HOH HOH . 
F 4 HOH A 7 507 3 HOH HOH . 
F 4 HOH A 8 508 7 HOH HOH . 
F 4 HOH A 9 509 11 HOH HOH . 
F 4 HOH A 10 510 23 HOH HOH . 
F 4 HOH A 11 511 20 HOH HOH . 
F 4 HOH A 12 512 29 HOH HOH . 
F 4 HOH A 13 513 2 HOH HOH . 
F 4 HOH A 14 514 17 HOH HOH . 
F 4 HOH A 15 515 1 HOH HOH . 
F 4 HOH A 16 516 30 HOH HOH . 
G 4 HOH B 1 501 19 HOH HOH . 
G 4 HOH B 2 502 4 HOH HOH . 
G 4 HOH B 3 503 16 HOH HOH . 
G 4 HOH B 4 504 15 HOH HOH . 
G 4 HOH B 5 505 9 HOH HOH . 
G 4 HOH B 6 506 5 HOH HOH . 
G 4 HOH B 7 507 14 HOH HOH . 
G 4 HOH B 8 508 6 HOH HOH . 
G 4 HOH B 9 509 13 HOH HOH . 
G 4 HOH B 10 510 28 HOH HOH . 
G 4 HOH B 11 511 12 HOH HOH . 
G 4 HOH B 12 512 8 HOH HOH . 
G 4 HOH B 13 513 24 HOH HOH . 
G 4 HOH B 14 514 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . C 2 55.873 9.876 4.291 1 48.59 ? PA NAI 401 A 1 
HETATM 2 O O1A NAI . . . C 2 56.627 8.707 4.676 1 47.67 ? O1A NAI 401 A 1 
HETATM 3 O O2A NAI . . . C 2 56.236 10.563 2.93 1 49.4 ? O2A NAI 401 A 1 
HETATM 4 O O5B NAI . . . C 2 56.215 10.978 5.404 1 51.67 ? O5B NAI 401 A 1 
HETATM 5 C C5B NAI . . . C 2 56.347 10.786 6.789 1 52.36 ? C5B NAI 401 A 1 
HETATM 6 C C4B NAI . . . C 2 56.821 12.134 7.262 1 53.27 ? C4B NAI 401 A 1 
HETATM 7 O O4B NAI . . . C 2 56.627 12.198 8.66 1 56.43 ? O4B NAI 401 A 1 
HETATM 8 C C3B NAI . . . C 2 58.282 12.367 6.987 1 53.01 ? C3B NAI 401 A 1 
HETATM 9 O O3B NAI . . . C 2 58.453 13.714 6.554 1 53.09 ? O3B NAI 401 A 1 
HETATM 10 C C2B NAI . . . C 2 58.954 12.117 8.305 1 55.26 ? C2B NAI 401 A 1 
HETATM 11 O O2B NAI . . . C 2 60.208 12.792 8.478 1 55.5 ? O2B NAI 401 A 1 
HETATM 12 C C1B NAI . . . C 2 57.85 12.576 9.245 1 56.97 ? C1B NAI 401 A 1 
HETATM 13 N N9A NAI . . . C 2 57.782 11.953 10.541 1 59.41 ? N9A NAI 401 A 1 
HETATM 14 C C8A NAI . . . C 2 58.005 10.645 10.827 1 59.74 ? C8A NAI 401 A 1 
HETATM 15 N N7A NAI . . . C 2 57.833 10.504 12.169 1 61.15 ? N7A NAI 401 A 1 
HETATM 16 C C5A NAI . . . C 2 57.517 11.686 12.731 1 62 ? C5A NAI 401 A 1 
HETATM 17 C C6A NAI . . . C 2 57.181 12.136 14.092 1 65.89 ? C6A NAI 401 A 1 
HETATM 18 N N6A NAI . . . C 2 57.229 11.177 15.068 1 66.59 ? N6A NAI 401 A 1 
HETATM 19 N N1A NAI . . . C 2 56.89 13.451 14.303 1 66.28 ? N1A NAI 401 A 1 
HETATM 20 C C2A NAI . . . C 2 56.878 14.31 13.246 1 65.37 ? C2A NAI 401 A 1 
HETATM 21 N N3A NAI . . . C 2 57.158 13.941 11.971 1 61.82 ? N3A NAI 401 A 1 
HETATM 22 C C4A NAI . . . C 2 57.476 12.661 11.665 1 61.79 ? C4A NAI 401 A 1 
HETATM 23 O O3 NAI . . . C 2 54.214 10.2 3.903 1 53.6 ? O3 NAI 401 A 1 
HETATM 24 P PN NAI . . . C 2 53.053 9.121 3.683 1 51.77 ? PN NAI 401 A 1 
HETATM 25 O O1N NAI . . . C 2 53.991 8.445 4.682 1 49.46 ? O1N NAI 401 A 1 
HETATM 26 O O2N NAI . . . C 2 53.1 8.215 2.435 1 51.38 ? O2N NAI 401 A 1 
HETATM 27 O O5D NAI . . . C 2 51.964 8.639 4.791 1 54.02 ? O5D NAI 401 A 1 
HETATM 28 C C5D NAI . . . C 2 51.729 9.304 6.024 1 54.4 ? C5D NAI 401 A 1 
HETATM 29 C C4D NAI . . . C 2 50.411 8.762 6.452 1 54.5 ? C4D NAI 401 A 1 
HETATM 30 O O4D NAI . . . C 2 49.53 8.954 5.384 1 53.83 ? O4D NAI 401 A 1 
HETATM 31 C C3D NAI . . . C 2 50.44 7.261 6.675 1 54.87 ? C3D NAI 401 A 1 
HETATM 32 O O3D NAI . . . C 2 49.633 7.066 7.835 1 54.05 ? O3D NAI 401 A 1 
HETATM 33 C C2D NAI . . . C 2 49.796 6.597 5.482 1 53.89 ? C2D NAI 401 A 1 
HETATM 34 O O2D NAI . . . C 2 48.872 5.521 5.764 1 53.55 ? O2D NAI 401 A 1 
HETATM 35 C C1D NAI . . . C 2 48.899 7.726 5.007 1 54.9 ? C1D NAI 401 A 1 
HETATM 36 N N1N NAI . . . C 2 48.607 7.707 3.541 1 54.5 ? N1N NAI 401 A 1 
HETATM 37 C C2N NAI . . . C 2 47.33 7.769 3.177 1 56.03 ? C2N NAI 401 A 1 
HETATM 38 C C3N NAI . . . C 2 46.985 7.795 1.862 1 59 ? C3N NAI 401 A 1 
HETATM 39 C C7N NAI . . . C 2 45.551 7.85 1.385 1 60.49 ? C7N NAI 401 A 1 
HETATM 40 O O7N NAI . . . C 2 45.389 7.614 0.19 1 65.45 ? O7N NAI 401 A 1 
HETATM 41 N N7N NAI . . . C 2 44.492 8.126 2.141 1 58.73 ? N7N NAI 401 A 1 
HETATM 42 C C4N NAI . . . C 2 48.057 7.754 0.811 1 56.78 ? C4N NAI 401 A 1 
HETATM 43 C C5N NAI . . . C 2 49.395 7.665 1.316 1 55.28 ? C5N NAI 401 A 1 
HETATM 44 C C6N NAI . . . C 2 49.616 7.659 2.67 1 55.05 ? C6N NAI 401 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           416 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#