data_6JWA # _model_server_result.job_id f7tTGxO5NPNlrYOfL9FD7w _model_server_result.datetime_utc '2024-11-29 23:18:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6JWA # _exptl.entry_id 6JWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.15 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JWA _cell.length_a 48.21 _cell.length_b 78.936 _cell.length_c 82.842 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 I N4 O4' _chem_comp.formula_weight 392.15 _chem_comp.id 5ID _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-IODOTUBERCIDIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' 5ID sing 1 n n O5' H5' 5ID sing 2 n n C5' C4' 5ID sing 3 n n C5' "H5'1" 5ID sing 4 n n C5' "H5'2" 5ID sing 5 n n C4' O4' 5ID sing 6 n n C4' C3' 5ID sing 7 n n C4' H4' 5ID sing 8 n n O4' C1' 5ID sing 9 n n C1' N9 5ID sing 10 n n C1' C2' 5ID sing 11 n n C1' H1' 5ID sing 12 n n N9 C8 5ID sing 13 n y N9 C4 5ID sing 14 n y C8 C7 5ID doub 15 n y C8 H8 5ID sing 16 n n C7 C5 5ID sing 17 n y C7 IAE 5ID sing 18 n n C5 C6 5ID doub 19 n y C5 C4 5ID sing 20 n y C6 N1 5ID sing 21 n y C6 N6 5ID sing 22 n n N1 C2 5ID doub 23 n y C2 N3 5ID sing 24 n y C2 H2 5ID sing 25 n n N3 C4 5ID doub 26 n y N6 H6N1 5ID sing 27 n n N6 H6N2 5ID sing 28 n n C2' O2' 5ID sing 29 n n C2' C3' 5ID sing 30 n n C2' H2' 5ID sing 31 n n O2' HA 5ID sing 32 n n C3' O3' 5ID sing 33 n n C3' H3' 5ID sing 34 n n O3' HB 5ID sing 35 n n # _atom_sites.entry_id 6JWA _atom_sites.fract_transf_matrix[1][1] 0.020743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5ID A 1 401 1 5ID 5ID . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 7 EDO EDO . H 3 EDO A 1 407 8 EDO EDO . I 4 HOH A 1 501 67 HOH HOH . I 4 HOH A 2 502 45 HOH HOH . I 4 HOH A 3 503 41 HOH HOH . I 4 HOH A 4 504 90 HOH HOH . I 4 HOH A 5 505 109 HOH HOH . I 4 HOH A 6 506 85 HOH HOH . I 4 HOH A 7 507 37 HOH HOH . I 4 HOH A 8 508 64 HOH HOH . I 4 HOH A 9 509 100 HOH HOH . I 4 HOH A 10 510 32 HOH HOH . I 4 HOH A 11 511 52 HOH HOH . I 4 HOH A 12 512 117 HOH HOH . I 4 HOH A 13 513 25 HOH HOH . I 4 HOH A 14 514 145 HOH HOH . I 4 HOH A 15 515 48 HOH HOH . I 4 HOH A 16 516 78 HOH HOH . I 4 HOH A 17 517 103 HOH HOH . I 4 HOH A 18 518 113 HOH HOH . I 4 HOH A 19 519 4 HOH HOH . I 4 HOH A 20 520 10 HOH HOH . I 4 HOH A 21 521 133 HOH HOH . I 4 HOH A 22 522 173 HOH HOH . I 4 HOH A 23 523 15 HOH HOH . I 4 HOH A 24 524 68 HOH HOH . I 4 HOH A 25 525 146 HOH HOH . I 4 HOH A 26 526 58 HOH HOH . I 4 HOH A 27 527 119 HOH HOH . I 4 HOH A 28 528 57 HOH HOH . I 4 HOH A 29 529 116 HOH HOH . I 4 HOH A 30 530 107 HOH HOH . I 4 HOH A 31 531 30 HOH HOH . I 4 HOH A 32 532 62 HOH HOH . I 4 HOH A 33 533 18 HOH HOH . I 4 HOH A 34 534 44 HOH HOH . I 4 HOH A 35 535 50 HOH HOH . I 4 HOH A 36 536 3 HOH HOH . I 4 HOH A 37 537 20 HOH HOH . I 4 HOH A 38 538 26 HOH HOH . I 4 HOH A 39 539 156 HOH HOH . I 4 HOH A 40 540 110 HOH HOH . I 4 HOH A 41 541 148 HOH HOH . I 4 HOH A 42 542 125 HOH HOH . I 4 HOH A 43 543 122 HOH HOH . I 4 HOH A 44 544 14 HOH HOH . I 4 HOH A 45 545 46 HOH HOH . I 4 HOH A 46 546 36 HOH HOH . I 4 HOH A 47 547 53 HOH HOH . I 4 HOH A 48 548 136 HOH HOH . I 4 HOH A 49 549 16 HOH HOH . I 4 HOH A 50 550 59 HOH HOH . I 4 HOH A 51 551 56 HOH HOH . I 4 HOH A 52 552 29 HOH HOH . I 4 HOH A 53 553 51 HOH HOH . I 4 HOH A 54 554 23 HOH HOH . I 4 HOH A 55 555 12 HOH HOH . I 4 HOH A 56 556 11 HOH HOH . I 4 HOH A 57 557 60 HOH HOH . I 4 HOH A 58 558 95 HOH HOH . I 4 HOH A 59 559 126 HOH HOH . I 4 HOH A 60 560 42 HOH HOH . I 4 HOH A 61 561 80 HOH HOH . I 4 HOH A 62 562 17 HOH HOH . I 4 HOH A 63 563 31 HOH HOH . I 4 HOH A 64 564 72 HOH HOH . I 4 HOH A 65 565 34 HOH HOH . I 4 HOH A 66 566 7 HOH HOH . I 4 HOH A 67 567 69 HOH HOH . I 4 HOH A 68 568 24 HOH HOH . I 4 HOH A 69 569 92 HOH HOH . I 4 HOH A 70 570 70 HOH HOH . I 4 HOH A 71 571 61 HOH HOH . I 4 HOH A 72 572 88 HOH HOH . I 4 HOH A 73 573 157 HOH HOH . I 4 HOH A 74 574 153 HOH HOH . I 4 HOH A 75 575 65 HOH HOH . I 4 HOH A 76 576 71 HOH HOH . I 4 HOH A 77 577 22 HOH HOH . I 4 HOH A 78 578 75 HOH HOH . I 4 HOH A 79 579 9 HOH HOH . I 4 HOH A 80 580 77 HOH HOH . I 4 HOH A 81 581 66 HOH HOH . I 4 HOH A 82 582 5 HOH HOH . I 4 HOH A 83 583 13 HOH HOH . I 4 HOH A 84 584 1 HOH HOH . I 4 HOH A 85 585 74 HOH HOH . I 4 HOH A 86 586 40 HOH HOH . I 4 HOH A 87 587 84 HOH HOH . I 4 HOH A 88 588 79 HOH HOH . I 4 HOH A 89 589 152 HOH HOH . I 4 HOH A 90 590 111 HOH HOH . I 4 HOH A 91 591 47 HOH HOH . I 4 HOH A 92 592 19 HOH HOH . I 4 HOH A 93 593 99 HOH HOH . I 4 HOH A 94 594 121 HOH HOH . I 4 HOH A 95 595 55 HOH HOH . I 4 HOH A 96 596 102 HOH HOH . I 4 HOH A 97 597 35 HOH HOH . I 4 HOH A 98 598 86 HOH HOH . I 4 HOH A 99 599 97 HOH HOH . I 4 HOH A 100 600 63 HOH HOH . I 4 HOH A 101 601 159 HOH HOH . I 4 HOH A 102 602 170 HOH HOH . I 4 HOH A 103 603 39 HOH HOH . I 4 HOH A 104 604 38 HOH HOH . I 4 HOH A 105 605 6 HOH HOH . I 4 HOH A 106 606 140 HOH HOH . I 4 HOH A 107 607 28 HOH HOH . I 4 HOH A 108 608 154 HOH HOH . I 4 HOH A 109 609 162 HOH HOH . I 4 HOH A 110 610 27 HOH HOH . I 4 HOH A 111 611 172 HOH HOH . I 4 HOH A 112 612 144 HOH HOH . I 4 HOH A 113 613 168 HOH HOH . I 4 HOH A 114 614 94 HOH HOH . I 4 HOH A 115 615 2 HOH HOH . I 4 HOH A 116 616 158 HOH HOH . I 4 HOH A 117 617 150 HOH HOH . I 4 HOH A 118 618 139 HOH HOH . I 4 HOH A 119 619 129 HOH HOH . I 4 HOH A 120 620 101 HOH HOH . I 4 HOH A 121 621 82 HOH HOH . I 4 HOH A 122 622 81 HOH HOH . I 4 HOH A 123 623 123 HOH HOH . I 4 HOH A 124 624 104 HOH HOH . I 4 HOH A 125 625 21 HOH HOH . I 4 HOH A 126 626 83 HOH HOH . I 4 HOH A 127 627 165 HOH HOH . I 4 HOH A 128 628 164 HOH HOH . I 4 HOH A 129 629 91 HOH HOH . I 4 HOH A 130 630 169 HOH HOH . I 4 HOH A 131 631 147 HOH HOH . I 4 HOH A 132 632 87 HOH HOH . I 4 HOH A 133 633 132 HOH HOH . I 4 HOH A 134 634 155 HOH HOH . I 4 HOH A 135 635 167 HOH HOH . I 4 HOH A 136 636 160 HOH HOH . I 4 HOH A 137 637 166 HOH HOH . I 4 HOH A 138 638 89 HOH HOH . I 4 HOH A 139 639 171 HOH HOH . I 4 HOH A 140 640 76 HOH HOH . I 4 HOH A 141 641 141 HOH HOH . I 4 HOH A 142 642 93 HOH HOH . I 4 HOH A 143 643 108 HOH HOH . I 4 HOH A 144 644 138 HOH HOH . I 4 HOH A 145 645 127 HOH HOH . I 4 HOH A 146 646 8 HOH HOH . I 4 HOH A 147 647 143 HOH HOH . I 4 HOH A 148 648 49 HOH HOH . I 4 HOH A 149 649 163 HOH HOH . I 4 HOH A 150 650 54 HOH HOH . I 4 HOH A 151 651 124 HOH HOH . I 4 HOH A 152 652 130 HOH HOH . I 4 HOH A 153 653 174 HOH HOH . I 4 HOH A 154 654 106 HOH HOH . I 4 HOH A 155 655 161 HOH HOH . I 4 HOH A 156 656 149 HOH HOH . I 4 HOH A 157 657 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' 5ID . . . B 2 -13.424 -3.334 -8.151 1 44.45 ? O5' 5ID 401 A 1 HETATM 2 C C5' 5ID . . . B 2 -14.527 -3.412 -7.287 1 36.04 ? C5' 5ID 401 A 1 HETATM 3 C C4' 5ID . . . B 2 -14.823 -4.888 -6.991 1 35.51 ? C4' 5ID 401 A 1 HETATM 4 O O4' 5ID . . . B 2 -15.105 -5.525 -8.117 1 36.39 ? O4' 5ID 401 A 1 HETATM 5 C C1' 5ID . . . B 2 -13.966 -6.649 -8.39 1 32.3 ? C1' 5ID 401 A 1 HETATM 6 N N9 5ID . . . B 2 -13.568 -6.596 -9.725 1 30.26 ? N9 5ID 401 A 1 HETATM 7 C C8 5ID . . . B 2 -13.277 -5.473 -10.411 1 25.37 ? C8 5ID 401 A 1 HETATM 8 C C7 5ID . . . B 2 -12.913 -5.818 -11.728 1 25.41 ? C7 5ID 401 A 1 HETATM 9 C C5 5ID . . . B 2 -12.99 -7.273 -11.782 1 28.65 ? C5 5ID 401 A 1 HETATM 10 C C6 5ID . . . B 2 -12.752 -8.317 -12.807 1 31.75 ? C6 5ID 401 A 1 HETATM 11 N N1 5ID . . . B 2 -12.942 -9.617 -12.481 1 31.65 ? N1 5ID 401 A 1 HETATM 12 C C2 5ID . . . B 2 -13.353 -9.972 -11.229 1 28.26 ? C2 5ID 401 A 1 HETATM 13 N N3 5ID . . . B 2 -13.569 -9.072 -10.282 1 26.96 ? N3 5ID 401 A 1 HETATM 14 C C4 5ID . . . B 2 -13.402 -7.686 -10.511 1 28.21 ? C4 5ID 401 A 1 HETATM 15 N N6 5ID . . . B 2 -12.321 -7.939 -14.161 1 21.92 ? N6 5ID 401 A 1 HETATM 16 C C2' 5ID . . . B 2 -12.939 -6.332 -7.604 1 40.11 ? C2' 5ID 401 A 1 HETATM 17 O O2' 5ID . . . B 2 -12.267 -7.51 -7.147 1 47.81 ? O2' 5ID 401 A 1 HETATM 18 C C3' 5ID . . . B 2 -13.563 -5.589 -6.398 1 41.72 ? C3' 5ID 401 A 1 HETATM 19 O O3' 5ID . . . B 2 -13.927 -6.47 -5.434 1 47.12 ? O3' 5ID 401 A 1 HETATM 20 I IAE 5ID . . . B 2 -12.341 -4.521 -13.286 1 33.89 ? IAE 5ID 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #