data_6JWQ # _model_server_result.job_id TVZY6MGsgyGuhW9fyaZBIQ _model_server_result.datetime_utc '2024-11-23 21:38:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jwq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 6JWQ # _exptl.entry_id 6JWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JWQ _cell.length_a 101.175 _cell.length_b 137.224 _cell.length_c 139.282 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 42 A GLU 42 1_555 E CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 A OE1 GLU 42 A GLU 42 1_555 E CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc3 A O GLY 46 A GLY 46 1_555 E CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc4 A OE1 GLU 99 A GLU 99 1_555 E CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc5 A OE2 GLU 99 A GLU 99 1_555 E CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc6 A OD1 ASP 208 A ASP 208 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 A OD1 ASP 210 A ASP 210 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc8 C MG MG . A MG 801 1_555 D O3B ATP . A ATP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc9 C MG MG . A MG 801 1_555 D O2B ATP . A ATP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc10 C MG MG . A MG 801 1_555 D O3A ATP . A ATP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc11 C MG MG . A MG 801 1_555 J O HOH . A HOH 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc12 B OD1 ASP 208 B ASP 208 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc13 B OD2 ASP 208 B ASP 208 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc14 B OD1 ASP 210 B ASP 210 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc15 G O2P AMP . B AMP 801 1_555 H MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc16 H MG MG . B MG 802 1_555 K O HOH . B HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 115 n n PG O2G ATP sing 116 n n PG O3G ATP sing 117 n n PG O3B ATP sing 118 n n O2G HOG2 ATP sing 119 n n O3G HOG3 ATP sing 120 n n PB O1B ATP doub 121 n n PB O2B ATP sing 122 n n PB O3B ATP sing 123 n n PB O3A ATP sing 124 n n O2B HOB2 ATP sing 125 n n PA O1A ATP doub 126 n n PA O2A ATP sing 127 n n PA O3A ATP sing 128 n n PA O5' ATP sing 129 n n O2A HOA2 ATP sing 130 n n O5' C5' ATP sing 131 n n C5' C4' ATP sing 132 n n C5' "H5'1" ATP sing 133 n n C5' "H5'2" ATP sing 134 n n C4' O4' ATP sing 135 n n C4' C3' ATP sing 136 n n C4' H4' ATP sing 137 n n O4' C1' ATP sing 138 n n C3' O3' ATP sing 139 n n C3' C2' ATP sing 140 n n C3' H3' ATP sing 141 n n O3' HO3' ATP sing 142 n n C2' O2' ATP sing 143 n n C2' C1' ATP sing 144 n n C2' H2' ATP sing 145 n n O2' HO2' ATP sing 146 n n C1' N9 ATP sing 147 n n C1' H1' ATP sing 148 n n N9 C8 ATP sing 149 n y N9 C4 ATP sing 150 n y C8 N7 ATP doub 151 n y C8 H8 ATP sing 152 n n N7 C5 ATP sing 153 n y C5 C6 ATP sing 154 n y C5 C4 ATP doub 155 n y C6 N6 ATP sing 156 n n C6 N1 ATP doub 157 n y N6 HN61 ATP sing 158 n n N6 HN62 ATP sing 159 n n N1 C2 ATP sing 160 n y C2 N3 ATP doub 161 n y C2 H2 ATP sing 162 n n N3 C4 ATP sing 163 n y # _atom_sites.entry_id 6JWQ _atom_sites.fract_transf_matrix[1][1] 0.009884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 801 802 MG MG . D 3 ATP A 1 802 804 ATP ATP . E 4 CA A 1 803 1 CA CA . F 5 ACT A 1 804 2 ACT ACT . G 6 AMP B 1 801 804 AMP AMP . H 2 MG B 1 802 802 MG MG . I 5 ACT B 1 803 3 ACT ACT . J 7 HOH A 1 901 40 HOH HOH . J 7 HOH A 2 902 88 HOH HOH . J 7 HOH A 3 903 78 HOH HOH . J 7 HOH A 4 904 49 HOH HOH . J 7 HOH A 5 905 107 HOH HOH . J 7 HOH A 6 906 90 HOH HOH . J 7 HOH A 7 907 112 HOH HOH . J 7 HOH A 8 908 45 HOH HOH . J 7 HOH A 9 909 98 HOH HOH . J 7 HOH A 10 910 108 HOH HOH . J 7 HOH A 11 911 8 HOH HOH . J 7 HOH A 12 912 31 HOH HOH . J 7 HOH A 13 913 85 HOH HOH . J 7 HOH A 14 914 113 HOH HOH . J 7 HOH A 15 915 27 HOH HOH . J 7 HOH A 16 916 71 HOH HOH . J 7 HOH A 17 917 62 HOH HOH . J 7 HOH A 18 918 69 HOH HOH . J 7 HOH A 19 919 56 HOH HOH . J 7 HOH A 20 920 79 HOH HOH . J 7 HOH A 21 921 7 HOH HOH . J 7 HOH A 22 922 20 HOH HOH . J 7 HOH A 23 923 81 HOH HOH . J 7 HOH A 24 924 3 HOH HOH . J 7 HOH A 25 925 12 HOH HOH . J 7 HOH A 26 926 120 HOH HOH . J 7 HOH A 27 927 72 HOH HOH . J 7 HOH A 28 928 68 HOH HOH . J 7 HOH A 29 929 26 HOH HOH . J 7 HOH A 30 930 80 HOH HOH . J 7 HOH A 31 931 77 HOH HOH . J 7 HOH A 32 932 63 HOH HOH . J 7 HOH A 33 933 17 HOH HOH . J 7 HOH A 34 934 9 HOH HOH . J 7 HOH A 35 935 103 HOH HOH . J 7 HOH A 36 936 110 HOH HOH . J 7 HOH A 37 937 82 HOH HOH . J 7 HOH A 38 938 14 HOH HOH . J 7 HOH A 39 939 46 HOH HOH . J 7 HOH A 40 940 73 HOH HOH . J 7 HOH A 41 941 86 HOH HOH . J 7 HOH A 42 942 37 HOH HOH . J 7 HOH A 43 943 38 HOH HOH . J 7 HOH A 44 944 18 HOH HOH . J 7 HOH A 45 945 53 HOH HOH . J 7 HOH A 46 946 117 HOH HOH . J 7 HOH A 47 947 119 HOH HOH . J 7 HOH A 48 948 57 HOH HOH . J 7 HOH A 49 949 94 HOH HOH . J 7 HOH A 50 950 123 HOH HOH . J 7 HOH A 51 951 70 HOH HOH . J 7 HOH A 52 952 22 HOH HOH . J 7 HOH A 53 953 5 HOH HOH . J 7 HOH A 54 954 15 HOH HOH . J 7 HOH A 55 955 13 HOH HOH . J 7 HOH A 56 956 30 HOH HOH . J 7 HOH A 57 957 104 HOH HOH . J 7 HOH A 58 958 54 HOH HOH . J 7 HOH A 59 959 83 HOH HOH . J 7 HOH A 60 960 60 HOH HOH . J 7 HOH A 61 961 96 HOH HOH . J 7 HOH A 62 962 52 HOH HOH . J 7 HOH A 63 963 4 HOH HOH . J 7 HOH A 64 964 130 HOH HOH . J 7 HOH A 65 965 6 HOH HOH . J 7 HOH A 66 966 100 HOH HOH . J 7 HOH A 67 967 127 HOH HOH . J 7 HOH A 68 968 23 HOH HOH . J 7 HOH A 69 969 92 HOH HOH . J 7 HOH A 70 970 99 HOH HOH . K 7 HOH B 1 901 126 HOH HOH . K 7 HOH B 2 902 109 HOH HOH . K 7 HOH B 3 903 47 HOH HOH . K 7 HOH B 4 904 55 HOH HOH . K 7 HOH B 5 905 76 HOH HOH . K 7 HOH B 6 906 128 HOH HOH . K 7 HOH B 7 907 124 HOH HOH . K 7 HOH B 8 908 89 HOH HOH . K 7 HOH B 9 909 51 HOH HOH . K 7 HOH B 10 910 39 HOH HOH . K 7 HOH B 11 911 105 HOH HOH . K 7 HOH B 12 912 19 HOH HOH . K 7 HOH B 13 913 111 HOH HOH . K 7 HOH B 14 914 74 HOH HOH . K 7 HOH B 15 915 42 HOH HOH . K 7 HOH B 16 916 10 HOH HOH . K 7 HOH B 17 917 84 HOH HOH . K 7 HOH B 18 918 114 HOH HOH . K 7 HOH B 19 919 66 HOH HOH . K 7 HOH B 20 920 58 HOH HOH . K 7 HOH B 21 921 106 HOH HOH . K 7 HOH B 22 922 59 HOH HOH . K 7 HOH B 23 923 75 HOH HOH . K 7 HOH B 24 924 41 HOH HOH . K 7 HOH B 25 925 29 HOH HOH . K 7 HOH B 26 926 91 HOH HOH . K 7 HOH B 27 927 25 HOH HOH . K 7 HOH B 28 928 28 HOH HOH . K 7 HOH B 29 929 122 HOH HOH . K 7 HOH B 30 930 35 HOH HOH . K 7 HOH B 31 931 43 HOH HOH . K 7 HOH B 32 932 101 HOH HOH . K 7 HOH B 33 933 16 HOH HOH . K 7 HOH B 34 934 87 HOH HOH . K 7 HOH B 35 935 115 HOH HOH . K 7 HOH B 36 936 65 HOH HOH . K 7 HOH B 37 937 118 HOH HOH . K 7 HOH B 38 938 102 HOH HOH . K 7 HOH B 39 939 34 HOH HOH . K 7 HOH B 40 940 48 HOH HOH . K 7 HOH B 41 941 11 HOH HOH . K 7 HOH B 42 942 36 HOH HOH . K 7 HOH B 43 943 32 HOH HOH . K 7 HOH B 44 944 1 HOH HOH . K 7 HOH B 45 945 129 HOH HOH . K 7 HOH B 46 946 21 HOH HOH . K 7 HOH B 47 947 97 HOH HOH . K 7 HOH B 48 948 24 HOH HOH . K 7 HOH B 49 949 67 HOH HOH . K 7 HOH B 50 950 64 HOH HOH . K 7 HOH B 51 951 33 HOH HOH . K 7 HOH B 52 952 50 HOH HOH . K 7 HOH B 53 953 2 HOH HOH . K 7 HOH B 54 954 121 HOH HOH . K 7 HOH B 55 955 116 HOH HOH . K 7 HOH B 56 956 93 HOH HOH . K 7 HOH B 57 957 61 HOH HOH . K 7 HOH B 58 958 95 HOH HOH . K 7 HOH B 59 959 44 HOH HOH . K 7 HOH B 60 960 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 28.199 20.797 7.635 1 120 ? PG ATP 802 A 1 HETATM 2 O O1G ATP . . . D 3 28.767 19.417 7.922 1 120 ? O1G ATP 802 A 1 HETATM 3 O O2G ATP . . . D 3 27.036 21.205 8.521 1 120 ? O2G ATP 802 A 1 HETATM 4 O O3G ATP . . . D 3 27.961 21.059 6.167 1 120 ? O3G ATP 802 A 1 HETATM 5 P PB ATP . . . D 3 30.706 22.019 7.085 1 120 ? PB ATP 802 A 1 HETATM 6 O O1B ATP . . . D 3 31.029 20.686 6.425 1 120 ? O1B ATP 802 A 1 HETATM 7 O O2B ATP . . . D 3 30.458 23.232 6.208 1 120 ? O2B ATP 802 A 1 HETATM 8 O O3B ATP . . . D 3 29.399 21.814 8.021 1 120 ? O3B ATP 802 A 1 HETATM 9 P PA ATP . . . D 3 33.462 22.028 7.924 1 116.98 ? PA ATP 802 A 1 HETATM 10 O O1A ATP . . . D 3 33.649 20.533 7.793 1 102.41 ? O1A ATP 802 A 1 HETATM 11 O O2A ATP . . . D 3 34.238 22.79 8.974 1 119.03 ? O2A ATP 802 A 1 HETATM 12 O O3A ATP . . . D 3 31.891 22.364 8.15 1 120 ? O3A ATP 802 A 1 HETATM 13 O O5' ATP . . . D 3 33.772 22.725 6.505 1 110.01 ? O5' ATP 802 A 1 HETATM 14 C C5' ATP . . . D 3 34.11 21.959 5.346 1 99.86 ? C5' ATP 802 A 1 HETATM 15 C C4' ATP . . . D 3 34.503 22.871 4.188 1 93.78 ? C4' ATP 802 A 1 HETATM 16 O O4' ATP . . . D 3 33.356 23.483 3.59 1 89.16 ? O4' ATP 802 A 1 HETATM 17 C C3' ATP . . . D 3 35.426 24.008 4.616 1 91.78 ? C3' ATP 802 A 1 HETATM 18 O O3' ATP . . . D 3 36.655 23.893 3.891 1 97.14 ? O3' ATP 802 A 1 HETATM 19 C C2' ATP . . . D 3 34.684 25.287 4.268 1 86.86 ? C2' ATP 802 A 1 HETATM 20 O O2' ATP . . . D 3 35.529 26.326 3.778 1 85.28 ? O2' ATP 802 A 1 HETATM 21 C C1' ATP . . . D 3 33.754 24.795 3.175 1 83.5 ? C1' ATP 802 A 1 HETATM 22 N N9 ATP . . . D 3 32.584 25.652 2.866 1 76.38 ? N9 ATP 802 A 1 HETATM 23 C C8 ATP . . . D 3 32.153 25.865 1.607 1 74.45 ? C8 ATP 802 A 1 HETATM 24 N N7 ATP . . . D 3 31.065 26.669 1.57 1 71.35 ? N7 ATP 802 A 1 HETATM 25 C C5 ATP . . . D 3 30.773 26.976 2.844 1 70.4 ? C5 ATP 802 A 1 HETATM 26 C C6 ATP . . . D 3 29.736 27.785 3.52 1 64.64 ? C6 ATP 802 A 1 HETATM 27 N N6 ATP . . . D 3 28.79 28.425 2.802 1 59.12 ? N6 ATP 802 A 1 HETATM 28 N N1 ATP . . . D 3 29.783 27.864 4.871 1 66.93 ? N1 ATP 802 A 1 HETATM 29 C C2 ATP . . . D 3 30.719 27.217 5.603 1 67.12 ? C2 ATP 802 A 1 HETATM 30 N N3 ATP . . . D 3 31.692 26.46 5.059 1 67.95 ? N3 ATP 802 A 1 HETATM 31 C C4 ATP . . . D 3 31.773 26.304 3.708 1 72.37 ? C4 ATP 802 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #