data_6JX0 # _model_server_result.job_id kqkazWH9_DyyXtlABFB5qw _model_server_result.datetime_utc '2024-11-27 02:57:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6JX0 # _exptl.entry_id 6JX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.607 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JX0 _cell.length_a 94.464 _cell.length_b 94.464 _cell.length_c 125.95 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C9 _struct_conn.ptnr2_label_comp_id YY3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id YY3 _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.795 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H33 N7 O2' _chem_comp.formula_weight 499.607 _chem_comp.id YY3 _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Osimertinib;AZD 9291' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 N2 YY3 sing 376 n n N2 C11 YY3 sing 377 n n N2 C12 YY3 sing 378 n n C10 C11 YY3 sing 379 n n C10 N1 YY3 sing 380 n n C28 N1 YY3 sing 381 n n N1 C2 YY3 sing 382 n n C14 O1 YY3 sing 383 n n C3 C2 YY3 doub 384 n y C3 C4 YY3 sing 385 n y C2 C1 YY3 sing 386 n y O1 C4 YY3 sing 387 n n C4 C5 YY3 doub 388 n y C1 N YY3 sing 389 n n C1 C6 YY3 doub 390 n y N C7 YY3 sing 391 n n C7 C8 YY3 sing 392 n n C7 O YY3 doub 393 n n C5 C6 YY3 sing 394 n y C5 N3 YY3 sing 395 n n C8 C9 YY3 doub 396 n n N3 C15 YY3 sing 397 n n C15 N5 YY3 doub 398 n y C15 N4 YY3 sing 399 n y C24 C25 YY3 doub 400 n y C24 C23 YY3 sing 401 n y N5 C18 YY3 sing 402 n y N4 C16 YY3 doub 403 n y C25 C26 YY3 sing 404 n y C23 C22 YY3 doub 405 n y C18 C19 YY3 sing 406 n n C18 C17 YY3 doub 407 n y C26 C19 YY3 sing 408 n y C26 C21 YY3 doub 409 n y C16 C17 YY3 sing 410 n y C19 C20 YY3 doub 411 n y C22 C21 YY3 sing 412 n y C21 N6 YY3 sing 413 n y C20 N6 YY3 sing 414 n y N6 C27 YY3 sing 415 n n C13 H1 YY3 sing 416 n n C13 H2 YY3 sing 417 n n C13 H3 YY3 sing 418 n n C12 H5 YY3 sing 419 n n C12 H6 YY3 sing 420 n n C12 H7 YY3 sing 421 n n C11 H8 YY3 sing 422 n n C11 H9 YY3 sing 423 n n C10 H10 YY3 sing 424 n n C10 H11 YY3 sing 425 n n C28 H12 YY3 sing 426 n n C28 H13 YY3 sing 427 n n C28 H14 YY3 sing 428 n n C3 H15 YY3 sing 429 n n C14 H16 YY3 sing 430 n n C14 H17 YY3 sing 431 n n C14 H18 YY3 sing 432 n n N H19 YY3 sing 433 n n C8 H20 YY3 sing 434 n n C9 H22 YY3 sing 435 n n C9 H23 YY3 sing 436 n n C6 H25 YY3 sing 437 n n N3 H26 YY3 sing 438 n n C16 H27 YY3 sing 439 n n C17 H28 YY3 sing 440 n n C25 H29 YY3 sing 441 n n C24 H30 YY3 sing 442 n n C23 H31 YY3 sing 443 n n C22 H32 YY3 sing 444 n n C27 H33 YY3 sing 445 n n C27 H34 YY3 sing 446 n n C27 H35 YY3 sing 447 n n C20 H36 YY3 sing 448 n n # _atom_sites.entry_id 6JX0 _atom_sites.fract_transf_matrix[1][1] 0.010586 _atom_sites.fract_transf_matrix[1][2] 0.006112 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YY3 A 1 1101 797 YY3 OVB . C 2 YY3 A 1 1102 1 YY3 D8F . D 2 YY3 A 1 1103 1 YY3 D8F . E 3 CL A 1 1104 1 CL CL . F 3 CL A 1 1105 1 CL CL . G 3 CL A 1 1106 1 CL CL . H 4 HOH A 1 1201 50 HOH HOH . H 4 HOH A 2 1202 44 HOH HOH . H 4 HOH A 3 1203 58 HOH HOH . H 4 HOH A 4 1204 154 HOH HOH . H 4 HOH A 5 1205 195 HOH HOH . H 4 HOH A 6 1206 201 HOH HOH . H 4 HOH A 7 1207 29 HOH HOH . H 4 HOH A 8 1208 191 HOH HOH . H 4 HOH A 9 1209 15 HOH HOH . H 4 HOH A 10 1210 118 HOH HOH . H 4 HOH A 11 1211 14 HOH HOH . H 4 HOH A 12 1212 36 HOH HOH . H 4 HOH A 13 1213 219 HOH HOH . H 4 HOH A 14 1214 26 HOH HOH . H 4 HOH A 15 1215 13 HOH HOH . H 4 HOH A 16 1216 9 HOH HOH . H 4 HOH A 17 1217 2 HOH HOH . H 4 HOH A 18 1218 194 HOH HOH . H 4 HOH A 19 1219 33 HOH HOH . H 4 HOH A 20 1220 165 HOH HOH . H 4 HOH A 21 1221 222 HOH HOH . H 4 HOH A 22 1222 20 HOH HOH . H 4 HOH A 23 1223 16 HOH HOH . H 4 HOH A 24 1224 198 HOH HOH . H 4 HOH A 25 1225 204 HOH HOH . H 4 HOH A 26 1226 116 HOH HOH . H 4 HOH A 27 1227 8 HOH HOH . H 4 HOH A 28 1228 34 HOH HOH . H 4 HOH A 29 1229 80 HOH HOH . H 4 HOH A 30 1230 143 HOH HOH . H 4 HOH A 31 1231 57 HOH HOH . H 4 HOH A 32 1232 215 HOH HOH . H 4 HOH A 33 1233 22 HOH HOH . H 4 HOH A 34 1234 5 HOH HOH . H 4 HOH A 35 1235 155 HOH HOH . H 4 HOH A 36 1236 45 HOH HOH . H 4 HOH A 37 1237 63 HOH HOH . H 4 HOH A 38 1238 78 HOH HOH . H 4 HOH A 39 1239 6 HOH HOH . H 4 HOH A 40 1240 4 HOH HOH . H 4 HOH A 41 1241 161 HOH HOH . H 4 HOH A 42 1242 7 HOH HOH . H 4 HOH A 43 1243 47 HOH HOH . H 4 HOH A 44 1244 35 HOH HOH . H 4 HOH A 45 1245 158 HOH HOH . H 4 HOH A 46 1246 88 HOH HOH . H 4 HOH A 47 1247 77 HOH HOH . H 4 HOH A 48 1248 199 HOH HOH . H 4 HOH A 49 1249 17 HOH HOH . H 4 HOH A 50 1250 200 HOH HOH . H 4 HOH A 51 1251 197 HOH HOH . H 4 HOH A 52 1252 41 HOH HOH . H 4 HOH A 53 1253 42 HOH HOH . H 4 HOH A 54 1254 25 HOH HOH . H 4 HOH A 55 1255 55 HOH HOH . H 4 HOH A 56 1256 111 HOH HOH . H 4 HOH A 57 1257 164 HOH HOH . H 4 HOH A 58 1258 65 HOH HOH . H 4 HOH A 59 1259 177 HOH HOH . H 4 HOH A 60 1260 159 HOH HOH . H 4 HOH A 61 1261 157 HOH HOH . H 4 HOH A 62 1262 137 HOH HOH . H 4 HOH A 63 1263 112 HOH HOH . H 4 HOH A 64 1264 218 HOH HOH . H 4 HOH A 65 1265 30 HOH HOH . H 4 HOH A 66 1266 167 HOH HOH . H 4 HOH A 67 1267 202 HOH HOH . H 4 HOH A 68 1268 72 HOH HOH . H 4 HOH A 69 1269 220 HOH HOH . H 4 HOH A 70 1270 3 HOH HOH . H 4 HOH A 71 1271 10 HOH HOH . H 4 HOH A 72 1272 206 HOH HOH . H 4 HOH A 73 1273 119 HOH HOH . H 4 HOH A 74 1274 19 HOH HOH . H 4 HOH A 75 1275 82 HOH HOH . H 4 HOH A 76 1276 211 HOH HOH . H 4 HOH A 77 1277 31 HOH HOH . H 4 HOH A 78 1278 225 HOH HOH . H 4 HOH A 79 1279 32 HOH HOH . H 4 HOH A 80 1280 28 HOH HOH . H 4 HOH A 81 1281 52 HOH HOH . H 4 HOH A 82 1282 151 HOH HOH . H 4 HOH A 83 1283 160 HOH HOH . H 4 HOH A 84 1284 113 HOH HOH . H 4 HOH A 85 1285 217 HOH HOH . H 4 HOH A 86 1286 183 HOH HOH . H 4 HOH A 87 1287 179 HOH HOH . H 4 HOH A 88 1288 27 HOH HOH . H 4 HOH A 89 1289 182 HOH HOH . H 4 HOH A 90 1290 205 HOH HOH . H 4 HOH A 91 1291 75 HOH HOH . H 4 HOH A 92 1292 1 HOH HOH . H 4 HOH A 93 1293 61 HOH HOH . H 4 HOH A 94 1294 147 HOH HOH . H 4 HOH A 95 1295 170 HOH HOH . H 4 HOH A 96 1296 188 HOH HOH . H 4 HOH A 97 1297 60 HOH HOH . H 4 HOH A 98 1298 140 HOH HOH . H 4 HOH A 99 1299 85 HOH HOH . H 4 HOH A 100 1300 76 HOH HOH . H 4 HOH A 101 1301 213 HOH HOH . H 4 HOH A 102 1302 175 HOH HOH . H 4 HOH A 103 1303 224 HOH HOH . H 4 HOH A 104 1304 149 HOH HOH . H 4 HOH A 105 1305 221 HOH HOH . H 4 HOH A 106 1306 169 HOH HOH . H 4 HOH A 107 1307 126 HOH HOH . H 4 HOH A 108 1308 196 HOH HOH . H 4 HOH A 109 1309 43 HOH HOH . H 4 HOH A 110 1310 108 HOH HOH . H 4 HOH A 111 1311 142 HOH HOH . H 4 HOH A 112 1312 181 HOH HOH . H 4 HOH A 113 1313 216 HOH HOH . H 4 HOH A 114 1314 178 HOH HOH . H 4 HOH A 115 1315 150 HOH HOH . H 4 HOH A 116 1316 172 HOH HOH . H 4 HOH A 117 1317 193 HOH HOH . H 4 HOH A 118 1318 12 HOH HOH . H 4 HOH A 119 1319 184 HOH HOH . H 4 HOH A 120 1320 90 HOH HOH . H 4 HOH A 121 1321 189 HOH HOH . H 4 HOH A 122 1322 212 HOH HOH . H 4 HOH A 123 1323 21 HOH HOH . H 4 HOH A 124 1324 168 HOH HOH . H 4 HOH A 125 1325 187 HOH HOH . H 4 HOH A 126 1326 186 HOH HOH . H 4 HOH A 127 1327 226 HOH HOH . H 4 HOH A 128 1328 96 HOH HOH . H 4 HOH A 129 1329 174 HOH HOH . H 4 HOH A 130 1330 69 HOH HOH . H 4 HOH A 131 1331 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 YY3 . . . B 2 54.31 47.616 123.506 1 62.21 ? C13 YY3 1101 A 1 HETATM 2 N N2 YY3 . . . B 2 54.418 48.832 124.27 1 68.37 ? N2 YY3 1101 A 1 HETATM 3 C C12 YY3 . . . B 2 54.772 49.91 123.383 1 69.42 ? C12 YY3 1101 A 1 HETATM 4 C C11 YY3 . . . B 2 53.146 49.149 124.874 1 66.84 ? C11 YY3 1101 A 1 HETATM 5 C C10 YY3 . . . B 2 52.674 47.996 125.739 1 56.31 ? C10 YY3 1101 A 1 HETATM 6 N N1 YY3 . . . B 2 53.699 47.71 126.706 1 61.41 ? N1 YY3 1101 A 1 HETATM 7 C C28 YY3 . . . B 2 54.595 48.733 127.167 1 52.17 ? C28 YY3 1101 A 1 HETATM 8 C C3 YY3 . . . B 2 52.801 46.111 128.156 1 53.98 ? C3 YY3 1101 A 1 HETATM 9 C C4 YY3 . . . B 2 52.837 44.926 128.798 1 52.08 ? C4 YY3 1101 A 1 HETATM 10 O O1 YY3 . . . B 2 51.844 44.547 129.664 1 53.25 ? O1 YY3 1101 A 1 HETATM 11 C C14 YY3 . . . B 2 50.606 45.083 129.396 1 47.32 ? C14 YY3 1101 A 1 HETATM 12 C C2 YY3 . . . B 2 53.815 46.423 127.317 1 55.55 ? C2 YY3 1101 A 1 HETATM 13 C C1 YY3 . . . B 2 54.881 45.589 127.116 1 48.26 ? C1 YY3 1101 A 1 HETATM 14 N N YY3 . . . B 2 55.892 46.08 126.22 1 45.63 ? N YY3 1101 A 1 HETATM 15 C C7 YY3 . . . B 2 57.074 45.375 125.826 1 47.92 ? C7 YY3 1101 A 1 HETATM 16 O O YY3 . . . B 2 57.294 44.302 126.184 1 53.98 ? O YY3 1101 A 1 HETATM 17 C C8 YY3 . . . B 2 58.04 46.054 124.881 1 41.45 ? C8 YY3 1101 A 1 HETATM 18 C C9 YY3 . . . B 2 59.48 46.136 125.369 1 45.96 ? C9 YY3 1101 A 1 HETATM 19 C C6 YY3 . . . B 2 54.917 44.383 127.781 1 48.49 ? C6 YY3 1101 A 1 HETATM 20 C C5 YY3 . . . B 2 53.871 44.084 128.615 1 46.69 ? C5 YY3 1101 A 1 HETATM 21 N N3 YY3 . . . B 2 53.724 42.901 129.4 1 47.75 ? N3 YY3 1101 A 1 HETATM 22 C C15 YY3 . . . B 2 54.314 41.653 129.062 1 46.88 ? C15 YY3 1101 A 1 HETATM 23 N N5 YY3 . . . B 2 54.891 41.485 127.921 1 46.24 ? N5 YY3 1101 A 1 HETATM 24 N N4 YY3 . . . B 2 54.225 40.728 129.954 1 50.19 ? N4 YY3 1101 A 1 HETATM 25 C C16 YY3 . . . B 2 54.723 39.548 129.752 1 48.17 ? C16 YY3 1101 A 1 HETATM 26 C C17 YY3 . . . B 2 55.346 39.312 128.56 1 46.85 ? C17 YY3 1101 A 1 HETATM 27 C C18 YY3 . . . B 2 55.427 40.331 127.655 1 53.62 ? C18 YY3 1101 A 1 HETATM 28 C C19 YY3 . . . B 2 56.081 40.167 126.297 1 62.37 ? C19 YY3 1101 A 1 HETATM 29 C C26 YY3 . . . B 2 57.002 39.211 125.806 1 63.73 ? C26 YY3 1101 A 1 HETATM 30 C C25 YY3 . . . B 2 57.667 38.08 126.306 1 66.09 ? C25 YY3 1101 A 1 HETATM 31 C C24 YY3 . . . B 2 58.538 37.354 125.52 1 62.16 ? C24 YY3 1101 A 1 HETATM 32 C C23 YY3 . . . B 2 58.748 37.74 124.218 1 72.62 ? C23 YY3 1101 A 1 HETATM 33 C C22 YY3 . . . B 2 58.094 38.84 123.718 1 77.98 ? C22 YY3 1101 A 1 HETATM 34 C C21 YY3 . . . B 2 57.214 39.576 124.525 1 73.44 ? C21 YY3 1101 A 1 HETATM 35 N N6 YY3 . . . B 2 56.498 40.667 124.224 1 73.17 ? N6 YY3 1101 A 1 HETATM 36 C C27 YY3 . . . B 2 56.46 41.355 122.956 1 65.39 ? C27 YY3 1101 A 1 HETATM 37 C C20 YY3 . . . B 2 55.813 41.031 125.265 1 67.52 ? C20 YY3 1101 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 37 #