data_6JX2 # _model_server_result.job_id hmmPET1SqnE5aqRPuo-VEw _model_server_result.datetime_utc '2025-01-03 00:40:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jx2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":406}' # _entry.id 6JX2 # _exptl.entry_id 6JX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JX2 _cell.length_a 84.949 _cell.length_b 90.179 _cell.length_c 157.817 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,Z,AA 1 1 C,D,T,U,V,W,X,Y,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 Q N N ? 4 R N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 75 A ALA 75 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc2 A O ASN 98 A ASN 98 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc3 A OD1 ASN 100 A ASN 100 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc4 A OD2 ASP 103 A ASP 103 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc5 A OD2 ASP 192 A ASP 192 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 A OD1 ASP 192 A ASP 192 1_555 L MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc7 A OE2 GLU 196 A GLU 196 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 A OE1 GLU 228 A GLU 228 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc9 A OE1 GLU 232 A GLU 232 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc10 A OD1 ASP 254 A ASP 254 1_555 H MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc11 F MG MG . A MG 402 1_555 B OD1 ASP 192 B ASP 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc12 F MG MG . A MG 402 1_555 B OE2 GLU 196 B GLU 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc13 B O ALA 75 B ALA 75 1_555 P MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc14 B OD1 ASN 100 B ASN 100 1_555 P MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc15 B OD1 ASP 103 B ASP 103 1_555 P MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc16 B OD2 ASP 103 B ASP 103 1_555 P MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc17 B OD1 ASP 116 B ASP 116 1_555 N MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc18 B OD2 ASP 192 B ASP 192 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc19 B OE2 GLU 196 B GLU 196 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc20 B OE1 GLU 228 B GLU 228 1_555 L MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc21 B OE1 GLU 232 B GLU 232 1_555 L MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc22 B OD1 ASP 254 B ASP 254 1_555 O MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc23 C OD2 ASP 192 C ASP 192 1_555 T MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc24 C OD1 ASP 192 C ASP 192 1_555 W MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc25 C OE2 GLU 196 C GLU 196 1_555 T MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc26 C OE1 GLU 228 C GLU 228 1_555 U MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc27 C OE1 GLU 232 C GLU 232 1_555 U MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc28 U MG MG . C MG 402 1_555 D OD1 ASP 192 D ASP 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc29 D OD2 ASP 192 D ASP 192 1_555 X MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc30 D OE2 GLU 196 D GLU 196 1_555 X MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc31 D OE1 GLU 228 D GLU 228 1_555 W MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc32 D OE1 GLU 232 D GLU 232 1_555 W MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6JX2 _atom_sites.fract_transf_matrix[1][1] 0.011772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 401 3 MG MG . F 2 MG A 1 402 7 MG MG . G 2 MG A 1 403 13 MG MG . H 2 MG A 1 404 15 MG MG . I 3 NAP A 1 405 1 NAP NAP . J 4 EDO A 1 406 3 EDO EDO . K 4 EDO A 1 407 4 EDO EDO . L 2 MG B 1 401 2 MG MG . M 2 MG B 1 402 8 MG MG . N 2 MG B 1 403 12 MG MG . O 2 MG B 1 404 14 MG MG . P 2 MG B 1 405 17 MG MG . Q 4 EDO B 1 406 1 EDO EDO . R 4 EDO B 1 407 2 EDO EDO . S 4 EDO B 1 408 6 EDO EDO . T 2 MG C 1 401 5 MG MG . U 2 MG C 1 402 11 MG MG . V 3 NAP C 1 403 2 NAP NAP . W 2 MG D 1 401 6 MG MG . X 2 MG D 1 402 10 MG MG . Y 3 NAP D 1 403 3 NAP NAP . Z 5 HOH A 1 501 65 HOH HOH . Z 5 HOH A 2 502 104 HOH HOH . Z 5 HOH A 3 503 66 HOH HOH . Z 5 HOH A 4 504 73 HOH HOH . Z 5 HOH A 5 505 79 HOH HOH . Z 5 HOH A 6 506 90 HOH HOH . Z 5 HOH A 7 507 43 HOH HOH . Z 5 HOH A 8 508 58 HOH HOH . Z 5 HOH A 9 509 103 HOH HOH . Z 5 HOH A 10 510 7 HOH HOH . Z 5 HOH A 11 511 78 HOH HOH . Z 5 HOH A 12 512 25 HOH HOH . Z 5 HOH A 13 513 102 HOH HOH . Z 5 HOH A 14 514 64 HOH HOH . Z 5 HOH A 15 515 16 HOH HOH . Z 5 HOH A 16 516 100 HOH HOH . Z 5 HOH A 17 517 59 HOH HOH . Z 5 HOH A 18 518 68 HOH HOH . Z 5 HOH A 19 519 34 HOH HOH . Z 5 HOH A 20 520 9 HOH HOH . Z 5 HOH A 21 521 72 HOH HOH . Z 5 HOH A 22 522 69 HOH HOH . Z 5 HOH A 23 523 20 HOH HOH . Z 5 HOH A 24 524 17 HOH HOH . Z 5 HOH A 25 525 32 HOH HOH . Z 5 HOH A 26 526 91 HOH HOH . Z 5 HOH A 27 527 15 HOH HOH . Z 5 HOH A 28 528 18 HOH HOH . Z 5 HOH A 29 529 46 HOH HOH . Z 5 HOH A 30 530 29 HOH HOH . Z 5 HOH A 31 531 3 HOH HOH . Z 5 HOH A 32 532 81 HOH HOH . Z 5 HOH A 33 533 10 HOH HOH . Z 5 HOH A 34 534 14 HOH HOH . Z 5 HOH A 35 535 19 HOH HOH . Z 5 HOH A 36 536 30 HOH HOH . Z 5 HOH A 37 537 36 HOH HOH . Z 5 HOH A 38 538 40 HOH HOH . Z 5 HOH A 39 539 8 HOH HOH . Z 5 HOH A 40 540 2 HOH HOH . Z 5 HOH A 41 541 21 HOH HOH . Z 5 HOH A 42 542 48 HOH HOH . Z 5 HOH A 43 543 11 HOH HOH . Z 5 HOH A 44 544 70 HOH HOH . Z 5 HOH A 45 545 52 HOH HOH . AA 5 HOH B 1 501 105 HOH HOH . AA 5 HOH B 2 502 89 HOH HOH . AA 5 HOH B 3 503 23 HOH HOH . AA 5 HOH B 4 504 101 HOH HOH . AA 5 HOH B 5 505 76 HOH HOH . AA 5 HOH B 6 506 60 HOH HOH . AA 5 HOH B 7 507 12 HOH HOH . AA 5 HOH B 8 508 77 HOH HOH . AA 5 HOH B 9 509 38 HOH HOH . AA 5 HOH B 10 510 47 HOH HOH . AA 5 HOH B 11 511 92 HOH HOH . AA 5 HOH B 12 512 98 HOH HOH . AA 5 HOH B 13 513 74 HOH HOH . AA 5 HOH B 14 514 26 HOH HOH . AA 5 HOH B 15 515 22 HOH HOH . AA 5 HOH B 16 516 61 HOH HOH . AA 5 HOH B 17 517 80 HOH HOH . AA 5 HOH B 18 518 62 HOH HOH . AA 5 HOH B 19 519 27 HOH HOH . AA 5 HOH B 20 520 71 HOH HOH . AA 5 HOH B 21 521 1 HOH HOH . AA 5 HOH B 22 522 57 HOH HOH . AA 5 HOH B 23 523 4 HOH HOH . AA 5 HOH B 24 524 109 HOH HOH . AA 5 HOH B 25 525 99 HOH HOH . AA 5 HOH B 26 526 54 HOH HOH . AA 5 HOH B 27 527 110 HOH HOH . AA 5 HOH B 28 528 63 HOH HOH . AA 5 HOH B 29 529 75 HOH HOH . AA 5 HOH B 30 530 111 HOH HOH . AA 5 HOH B 31 531 53 HOH HOH . BA 5 HOH C 1 501 82 HOH HOH . BA 5 HOH C 2 502 96 HOH HOH . BA 5 HOH C 3 503 83 HOH HOH . BA 5 HOH C 4 504 85 HOH HOH . BA 5 HOH C 5 505 13 HOH HOH . BA 5 HOH C 6 506 33 HOH HOH . BA 5 HOH C 7 507 37 HOH HOH . BA 5 HOH C 8 508 84 HOH HOH . BA 5 HOH C 9 509 107 HOH HOH . CA 5 HOH D 1 501 97 HOH HOH . CA 5 HOH D 2 502 95 HOH HOH . CA 5 HOH D 3 503 94 HOH HOH . CA 5 HOH D 4 504 87 HOH HOH . CA 5 HOH D 5 505 93 HOH HOH . CA 5 HOH D 6 506 88 HOH HOH . CA 5 HOH D 7 507 45 HOH HOH . CA 5 HOH D 8 508 50 HOH HOH . CA 5 HOH D 9 509 67 HOH HOH . CA 5 HOH D 10 510 108 HOH HOH . CA 5 HOH D 11 511 49 HOH HOH . CA 5 HOH D 12 512 106 HOH HOH . CA 5 HOH D 13 513 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Q 4 -10.013 22.064 48.973 1 65 ? C1 EDO 406 B 1 HETATM 2 O O1 EDO . . . Q 4 -10.716 23.265 48.605 1 55.85 ? O1 EDO 406 B 1 HETATM 3 C C2 EDO . . . Q 4 -8.563 22.435 49.326 1 69.44 ? C2 EDO 406 B 1 HETATM 4 O O2 EDO . . . Q 4 -7.62 21.506 48.758 1 70.67 ? O2 EDO 406 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #