data_6JX9 # _model_server_result.job_id UVn-xzDXs2JWbFY64ZJSnA _model_server_result.datetime_utc '2024-11-26 02:13:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6JX9 # _exptl.entry_id 6JX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.377 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(~{Z})-(1,3-dimethyl-5-oxidanylidene-pyrazol-4-ylidene)-oxidanyl-methyl]-2-(phenylmethyl)isoindole-1,3-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.21 _cell.angle_gamma 90 _cell.entry_id 6JX9 _cell.length_a 76.939 _cell.length_b 84.367 _cell.length_c 62.115 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -22.020577 0 122.262779 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 401 A CYS 401 1_555 A SG CYS 416 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 A NE2 HIS 226 A HIS 226 1_555 C CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 A NE2 HIS 308 A HIS 308 1_555 C CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A OE1 GLU 394 A GLU 394 1_555 C CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 B O12 CQC . A CQC 501 1_555 C CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc5 B O20 CQC . A CQC 501 1_555 C CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 C CO CO . A CO 502 1_555 D O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? # _chem_comp.formula 'C21 H17 N3 O4' _chem_comp.formula_weight 375.377 _chem_comp.id CQC _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(~{Z})-(1,3-dimethyl-5-oxidanylidene-pyrazol-4-ylidene)-oxidanyl-methyl]-2-(phenylmethyl)isoindole-1,3-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 C16 CQC doub 70 n n O12 C10 CQC sing 71 n n C27 C26 CQC doub 72 n y C27 C28 CQC sing 73 n y C16 N17 CQC sing 74 n n C16 C11 CQC sing 75 n n C21 N17 CQC sing 76 n n C26 C25 CQC sing 77 n y C10 C11 CQC doub 78 z n C10 C01 CQC sing 79 n n N17 N18 CQC sing 80 n n C11 C19 CQC sing 81 n n C28 C23 CQC doub 82 n y C06 C01 CQC doub 83 n y C06 C05 CQC sing 84 n y C01 C02 CQC sing 85 n y O13 C09 CQC doub 86 n n C25 C24 CQC doub 87 n y C05 C09 CQC sing 88 n n C05 C04 CQC doub 89 n y C09 N08 CQC sing 90 n n N18 C19 CQC doub 91 n n C19 C22 CQC sing 92 n n C02 C03 CQC doub 93 n y C23 C24 CQC sing 94 n y C23 C15 CQC sing 95 n n C04 C03 CQC sing 96 n y C04 C07 CQC sing 97 n n N08 C15 CQC sing 98 n n N08 C07 CQC sing 99 n n C07 O14 CQC doub 100 n n C15 H1 CQC sing 101 n n C15 H2 CQC sing 102 n n C21 H3 CQC sing 103 n n C21 H4 CQC sing 104 n n C21 H5 CQC sing 105 n n C22 H6 CQC sing 106 n n C22 H7 CQC sing 107 n n C22 H8 CQC sing 108 n n C24 H9 CQC sing 109 n n C26 H10 CQC sing 110 n n C28 H11 CQC sing 111 n n C02 H12 CQC sing 112 n n C03 H13 CQC sing 113 n n C06 H14 CQC sing 114 n n C25 H16 CQC sing 115 n n C27 H17 CQC sing 116 n n O12 H15 CQC sing 117 n n # _atom_sites.entry_id 6JX9 _atom_sites.fract_transf_matrix[1][1] 0.012997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002341 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CQC A 1 501 501 CQC LIG . C 3 CO A 1 502 1 CO CO . D 4 HOH A 1 601 86 HOH HOH . D 4 HOH A 2 602 139 HOH HOH . D 4 HOH A 3 603 49 HOH HOH . D 4 HOH A 4 604 170 HOH HOH . D 4 HOH A 5 605 188 HOH HOH . D 4 HOH A 6 606 146 HOH HOH . D 4 HOH A 7 607 175 HOH HOH . D 4 HOH A 8 608 131 HOH HOH . D 4 HOH A 9 609 53 HOH HOH . D 4 HOH A 10 610 122 HOH HOH . D 4 HOH A 11 611 135 HOH HOH . D 4 HOH A 12 612 75 HOH HOH . D 4 HOH A 13 613 99 HOH HOH . D 4 HOH A 14 614 89 HOH HOH . D 4 HOH A 15 615 187 HOH HOH . D 4 HOH A 16 616 51 HOH HOH . D 4 HOH A 17 617 116 HOH HOH . D 4 HOH A 18 618 56 HOH HOH . D 4 HOH A 19 619 151 HOH HOH . D 4 HOH A 20 620 26 HOH HOH . D 4 HOH A 21 621 165 HOH HOH . D 4 HOH A 22 622 117 HOH HOH . D 4 HOH A 23 623 29 HOH HOH . D 4 HOH A 24 624 137 HOH HOH . D 4 HOH A 25 625 79 HOH HOH . D 4 HOH A 26 626 104 HOH HOH . D 4 HOH A 27 627 111 HOH HOH . D 4 HOH A 28 628 83 HOH HOH . D 4 HOH A 29 629 103 HOH HOH . D 4 HOH A 30 630 132 HOH HOH . D 4 HOH A 31 631 1 HOH HOH . D 4 HOH A 32 632 84 HOH HOH . D 4 HOH A 33 633 113 HOH HOH . D 4 HOH A 34 634 39 HOH HOH . D 4 HOH A 35 635 11 HOH HOH . D 4 HOH A 36 636 144 HOH HOH . D 4 HOH A 37 637 174 HOH HOH . D 4 HOH A 38 638 14 HOH HOH . D 4 HOH A 39 639 42 HOH HOH . D 4 HOH A 40 640 80 HOH HOH . D 4 HOH A 41 641 27 HOH HOH . D 4 HOH A 42 642 74 HOH HOH . D 4 HOH A 43 643 69 HOH HOH . D 4 HOH A 44 644 91 HOH HOH . D 4 HOH A 45 645 90 HOH HOH . D 4 HOH A 46 646 33 HOH HOH . D 4 HOH A 47 647 43 HOH HOH . D 4 HOH A 48 648 10 HOH HOH . D 4 HOH A 49 649 70 HOH HOH . D 4 HOH A 50 650 62 HOH HOH . D 4 HOH A 51 651 92 HOH HOH . D 4 HOH A 52 652 24 HOH HOH . D 4 HOH A 53 653 163 HOH HOH . D 4 HOH A 54 654 28 HOH HOH . D 4 HOH A 55 655 133 HOH HOH . D 4 HOH A 56 656 7 HOH HOH . D 4 HOH A 57 657 5 HOH HOH . D 4 HOH A 58 658 101 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 36 HOH HOH . D 4 HOH A 61 661 4 HOH HOH . D 4 HOH A 62 662 77 HOH HOH . D 4 HOH A 63 663 184 HOH HOH . D 4 HOH A 64 664 87 HOH HOH . D 4 HOH A 65 665 156 HOH HOH . D 4 HOH A 66 666 112 HOH HOH . D 4 HOH A 67 667 15 HOH HOH . D 4 HOH A 68 668 34 HOH HOH . D 4 HOH A 69 669 61 HOH HOH . D 4 HOH A 70 670 8 HOH HOH . D 4 HOH A 71 671 23 HOH HOH . D 4 HOH A 72 672 76 HOH HOH . D 4 HOH A 73 673 55 HOH HOH . D 4 HOH A 74 674 67 HOH HOH . D 4 HOH A 75 675 94 HOH HOH . D 4 HOH A 76 676 65 HOH HOH . D 4 HOH A 77 677 110 HOH HOH . D 4 HOH A 78 678 25 HOH HOH . D 4 HOH A 79 679 57 HOH HOH . D 4 HOH A 80 680 64 HOH HOH . D 4 HOH A 81 681 46 HOH HOH . D 4 HOH A 82 682 48 HOH HOH . D 4 HOH A 83 683 19 HOH HOH . D 4 HOH A 84 684 38 HOH HOH . D 4 HOH A 85 685 121 HOH HOH . D 4 HOH A 86 686 173 HOH HOH . D 4 HOH A 87 687 129 HOH HOH . D 4 HOH A 88 688 81 HOH HOH . D 4 HOH A 89 689 158 HOH HOH . D 4 HOH A 90 690 21 HOH HOH . D 4 HOH A 91 691 71 HOH HOH . D 4 HOH A 92 692 179 HOH HOH . D 4 HOH A 93 693 168 HOH HOH . D 4 HOH A 94 694 60 HOH HOH . D 4 HOH A 95 695 50 HOH HOH . D 4 HOH A 96 696 22 HOH HOH . D 4 HOH A 97 697 143 HOH HOH . D 4 HOH A 98 698 177 HOH HOH . D 4 HOH A 99 699 58 HOH HOH . D 4 HOH A 100 700 6 HOH HOH . D 4 HOH A 101 701 107 HOH HOH . D 4 HOH A 102 702 63 HOH HOH . D 4 HOH A 103 703 37 HOH HOH . D 4 HOH A 104 704 161 HOH HOH . D 4 HOH A 105 705 142 HOH HOH . D 4 HOH A 106 706 118 HOH HOH . D 4 HOH A 107 707 66 HOH HOH . D 4 HOH A 108 708 120 HOH HOH . D 4 HOH A 109 709 155 HOH HOH . D 4 HOH A 110 710 95 HOH HOH . D 4 HOH A 111 711 17 HOH HOH . D 4 HOH A 112 712 82 HOH HOH . D 4 HOH A 113 713 123 HOH HOH . D 4 HOH A 114 714 16 HOH HOH . D 4 HOH A 115 715 68 HOH HOH . D 4 HOH A 116 716 3 HOH HOH . D 4 HOH A 117 717 44 HOH HOH . D 4 HOH A 118 718 96 HOH HOH . D 4 HOH A 119 719 20 HOH HOH . D 4 HOH A 120 720 13 HOH HOH . D 4 HOH A 121 721 88 HOH HOH . D 4 HOH A 122 722 47 HOH HOH . D 4 HOH A 123 723 136 HOH HOH . D 4 HOH A 124 724 85 HOH HOH . D 4 HOH A 125 725 9 HOH HOH . D 4 HOH A 126 726 45 HOH HOH . D 4 HOH A 127 727 115 HOH HOH . D 4 HOH A 128 728 114 HOH HOH . D 4 HOH A 129 729 159 HOH HOH . D 4 HOH A 130 730 40 HOH HOH . D 4 HOH A 131 731 119 HOH HOH . D 4 HOH A 132 732 98 HOH HOH . D 4 HOH A 133 733 41 HOH HOH . D 4 HOH A 134 734 18 HOH HOH . D 4 HOH A 135 735 125 HOH HOH . D 4 HOH A 136 736 30 HOH HOH . D 4 HOH A 137 737 154 HOH HOH . D 4 HOH A 138 738 148 HOH HOH . D 4 HOH A 139 739 105 HOH HOH . D 4 HOH A 140 740 35 HOH HOH . D 4 HOH A 141 741 72 HOH HOH . D 4 HOH A 142 742 138 HOH HOH . D 4 HOH A 143 743 160 HOH HOH . D 4 HOH A 144 744 109 HOH HOH . D 4 HOH A 145 745 127 HOH HOH . D 4 HOH A 146 746 176 HOH HOH . D 4 HOH A 147 747 162 HOH HOH . D 4 HOH A 148 748 93 HOH HOH . D 4 HOH A 149 749 147 HOH HOH . D 4 HOH A 150 750 12 HOH HOH . D 4 HOH A 151 751 171 HOH HOH . D 4 HOH A 152 752 130 HOH HOH . D 4 HOH A 153 753 32 HOH HOH . D 4 HOH A 154 754 178 HOH HOH . D 4 HOH A 155 755 108 HOH HOH . D 4 HOH A 156 756 134 HOH HOH . D 4 HOH A 157 757 167 HOH HOH . D 4 HOH A 158 758 157 HOH HOH . D 4 HOH A 159 759 153 HOH HOH . D 4 HOH A 160 760 102 HOH HOH . D 4 HOH A 161 761 141 HOH HOH . D 4 HOH A 162 762 73 HOH HOH . D 4 HOH A 163 763 182 HOH HOH . D 4 HOH A 164 764 128 HOH HOH . D 4 HOH A 165 765 97 HOH HOH . D 4 HOH A 166 766 52 HOH HOH . D 4 HOH A 167 767 2 HOH HOH . D 4 HOH A 168 768 150 HOH HOH . D 4 HOH A 169 769 164 HOH HOH . D 4 HOH A 170 770 186 HOH HOH . D 4 HOH A 171 771 169 HOH HOH . D 4 HOH A 172 772 145 HOH HOH . D 4 HOH A 173 773 140 HOH HOH . D 4 HOH A 174 774 78 HOH HOH . D 4 HOH A 175 775 100 HOH HOH . D 4 HOH A 176 776 183 HOH HOH . D 4 HOH A 177 777 126 HOH HOH . D 4 HOH A 178 778 185 HOH HOH . D 4 HOH A 179 779 152 HOH HOH . D 4 HOH A 180 780 31 HOH HOH . D 4 HOH A 181 781 149 HOH HOH . D 4 HOH A 182 782 124 HOH HOH . D 4 HOH A 183 783 54 HOH HOH . D 4 HOH A 184 784 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 CQC . . . B 2 3.477 -2.928 82.591 1 40.62 ? C10 CQC 501 A 1 HETATM 2 C C15 CQC . . . B 2 -3.651 -1.652 85.716 1 58.35 ? C15 CQC 501 A 1 HETATM 3 C C21 CQC . . . B 2 7.598 -5.698 82.499 1 39.32 ? C21 CQC 501 A 1 HETATM 4 C C22 CQC . . . B 2 4.007 -4.183 85.614 1 43.87 ? C22 CQC 501 A 1 HETATM 5 C C24 CQC . . . B 2 -5.314 -3.607 85.05 1 61.31 ? C24 CQC 501 A 1 HETATM 6 C C26 CQC . . . B 2 -6.239 -3.801 82.579 1 57.83 ? C26 CQC 501 A 1 HETATM 7 C C28 CQC . . . B 2 -4.586 -1.832 83.234 1 58.88 ? C28 CQC 501 A 1 HETATM 8 C C01 CQC . . . B 2 2.401 -2.348 83.501 1 40.48 ? C01 CQC 501 A 1 HETATM 9 C C02 CQC . . . B 2 2.727 -1.266 84.531 1 42.96 ? C02 CQC 501 A 1 HETATM 10 C C03 CQC . . . B 2 1.616 -0.689 85.41 1 46.65 ? C03 CQC 501 A 1 HETATM 11 C C04 CQC . . . B 2 0.168 -1.207 85.233 1 50.88 ? C04 CQC 501 A 1 HETATM 12 C C05 CQC . . . B 2 -0.125 -2.237 84.235 1 48.44 ? C05 CQC 501 A 1 HETATM 13 C C06 CQC . . . B 2 0.973 -2.838 83.339 1 41.71 ? C06 CQC 501 A 1 HETATM 14 C C07 CQC . . . B 2 -1.144 -0.859 85.927 1 55.71 ? C07 CQC 501 A 1 HETATM 15 C C09 CQC . . . B 2 -1.612 -2.555 84.274 1 52.54 ? C09 CQC 501 A 1 HETATM 16 C C11 CQC . . . B 2 4.596 -3.852 83.079 1 38.11 ? C11 CQC 501 A 1 HETATM 17 C C16 CQC . . . B 2 5.601 -4.299 82.266 1 38.32 ? C16 CQC 501 A 1 HETATM 18 C C19 CQC . . . B 2 4.827 -4.363 84.339 1 44 ? C19 CQC 501 A 1 HETATM 19 C C23 CQC . . . B 2 -4.519 -2.358 84.67 1 62.1 ? C23 CQC 501 A 1 HETATM 20 C C25 CQC . . . B 2 -6.176 -4.324 84.011 1 62.49 ? C25 CQC 501 A 1 HETATM 21 C C27 CQC . . . B 2 -5.434 -2.563 82.196 1 56.14 ? C27 CQC 501 A 1 HETATM 22 N N08 CQC . . . B 2 -2.242 -1.691 85.329 1 58.88 ? N08 CQC 501 A 1 HETATM 23 N N17 CQC . . . B 2 6.418 -5.043 82.994 1 37.36 ? N17 CQC 501 A 1 HETATM 24 N N18 CQC . . . B 2 5.933 -5.095 84.287 1 41.95 ? N18 CQC 501 A 1 HETATM 25 O O12 CQC . . . B 2 3.456 -2.59 81.448 1 37.27 ? O12 CQC 501 A 1 HETATM 26 O O13 CQC . . . B 2 -2.124 -3.36 83.57 1 54.29 ? O13 CQC 501 A 1 HETATM 27 O O14 CQC . . . B 2 -1.256 -0.053 86.79 1 61.87 ? O14 CQC 501 A 1 HETATM 28 O O20 CQC . . . B 2 5.775 -4.021 80.901 1 32.53 ? O20 CQC 501 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #