data_6JXK # _model_server_result.job_id RaH1f6t2IO1oIkKBfUGX_A _model_server_result.datetime_utc '2024-11-27 21:22:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":307}' # _entry.id 6JXK # _exptl.entry_id 6JXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.79 _cell.angle_gamma 90 _cell.entry_id 6JXK _cell.length_a 191.51 _cell.length_b 106.43 _cell.length_c 250.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L 1 1 C,D,M,N,O,P,Q,R,S,T,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 130 B CYS 131 1_555 B SG CYS 151 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 161 B CYS 162 1_555 B SG CYS 177 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 200 B CYS 201 1_555 B SG CYS 261 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 130 F CYS 131 1_555 C SG CYS 151 F CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 161 F CYS 162 1_555 C SG CYS 177 F CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 200 F CYS 201 1_555 C SG CYS 261 F CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 B ND2 ASN 145 B ASN 146 1_555 L C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 B ND2 ASN 192 B ASN 193 1_555 K C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale3 C ND2 ASN 98 F ASN 99 1_555 M C1 NAG . F NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale4 C ND2 ASN 129 F ASN 130 1_555 N C1 NAG . F NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale5 C ND2 ASN 145 F ASN 146 1_555 R C1 NAG . F NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale6 C ND2 ASN 160 F ASN 161 1_555 O C1 NAG . F NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale7 C ND2 ASN 192 F ASN 193 1_555 Q C1 NAG . F NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale8 C ND2 ASN 220 F ASN 221 1_555 P C1 NAG . F NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A O VAL 292 A VAL 338 1_555 J K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc2 A O ALA 293 A ALA 339 1_555 J K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.225 ? metalc ? metalc3 A O VAL 295 A VAL 341 1_555 J K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 A OE1 GLU 297 A GLU 343 1_555 J K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 A OD1 ASP 339 A ASP 385 1_555 E MG MF4 . A MF4 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc6 A O THR 341 A THR 387 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc7 A OD1 ASP 680 A ASP 726 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc8 A OD2 ASP 680 A ASP 726 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 A O LYS 689 A LYS 735 1_555 I K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc10 A O ALA 691 A ALA 737 1_555 I K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc11 A OD1 ASP 710 A ASP 756 1_555 I K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc12 A OD2 ASP 710 A ASP 756 1_555 I K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc13 A OE2 GLU 749 A GLU 795 1_555 J K K . A K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc14 D O VAL 292 E VAL 338 1_555 X K K . E K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc15 D O ALA 293 E ALA 339 1_555 X K K . E K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc16 D O VAL 295 E VAL 341 1_555 X K K . E K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc17 D OE1 GLU 297 E GLU 343 1_555 X K K . E K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc18 D OE2 GLU 297 E GLU 343 1_555 X K K . E K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.473 ? metalc ? metalc19 D OD1 ASP 339 E ASP 385 1_555 T MG MF4 . E MF4 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc20 D OD2 ASP 339 E ASP 385 1_555 U MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc21 D O THR 341 E THR 387 1_555 U MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc22 D OG1 THR 341 E THR 387 1_555 U MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc23 D OD1 ASP 680 E ASP 726 1_555 U MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc24 D OD2 ASP 680 E ASP 726 1_555 U MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc25 D O LEU 688 E LEU 734 1_555 W K K . E K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.423 ? metalc ? metalc26 D O LYS 689 E LYS 735 1_555 W K K . E K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc27 D O ALA 691 E ALA 737 1_555 W K K . E K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc28 D OD1 ASP 710 E ASP 756 1_555 W K K . E K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc29 D OD2 ASP 710 E ASP 756 1_555 W K K . E K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc30 D OE2 GLU 749 E GLU 795 1_555 X K K . E K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc31 D OE1 GLU 774 E GLU 820 1_555 X K K . E K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.298 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6JXK _atom_sites.fract_transf_matrix[1][1] 0.005222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001675 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MF4 A 1 1101 1101 MF4 MF4 . F 4 MG A 1 1102 1102 MG MG . G 5 CLR A 1 1103 1205 CLR CLR . H 6 K A 1 1104 1 K K . I 6 K A 1 1105 3 K K . J 6 K A 1 1106 6 K K . K 7 NAG B 1 301 305 NAG NAG . L 7 NAG B 1 302 306 NAG NAG . M 7 NAG F 1 301 301 NAG NAG . N 7 NAG F 1 302 302 NAG NAG . O 7 NAG F 1 303 303 NAG NAG . P 7 NAG F 1 304 304 NAG NAG . Q 7 NAG F 1 305 305 NAG NAG . R 7 NAG F 1 306 306 NAG NAG . S 5 CLR F 1 307 1205 CLR CLR . T 3 MF4 E 1 1101 1101 MF4 MF4 . U 4 MG E 1 1102 1102 MG MG . V 6 K E 1 1103 2 K K . W 6 K E 1 1104 3 K K . X 6 K E 1 1105 6 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . S 5 233.45 1.53 54.411 1 315.61 ? C1 CLR 307 F 1 HETATM 2 C C2 CLR . . . S 5 232.86 1.883 53.051 1 312.57 ? C2 CLR 307 F 1 HETATM 3 C C3 CLR . . . S 5 231.982 0.765 52.499 1 310.25 ? C3 CLR 307 F 1 HETATM 4 C C4 CLR . . . S 5 230.902 0.363 53.508 1 313.9 ? C4 CLR 307 F 1 HETATM 5 C C5 CLR . . . S 5 231.463 0.188 54.903 1 314.2 ? C5 CLR 307 F 1 HETATM 6 C C6 CLR . . . S 5 231.122 -0.893 55.625 1 311.19 ? C6 CLR 307 F 1 HETATM 7 C C7 CLR . . . S 5 231.853 -1.295 56.876 1 308.45 ? C7 CLR 307 F 1 HETATM 8 C C8 CLR . . . S 5 232.122 -0.012 57.632 1 310.35 ? C8 CLR 307 F 1 HETATM 9 C C9 CLR . . . S 5 232.977 0.94 56.8 1 313.05 ? C9 CLR 307 F 1 HETATM 10 C C10 CLR . . . S 5 232.353 1.279 55.44 1 318.94 ? C10 CLR 307 F 1 HETATM 11 C C11 CLR . . . S 5 233.288 2.212 57.6 1 315.62 ? C11 CLR 307 F 1 HETATM 12 C C12 CLR . . . S 5 233.793 1.951 59.023 1 312.44 ? C12 CLR 307 F 1 HETATM 13 C C13 CLR . . . S 5 232.876 0.988 59.767 1 310.2 ? C13 CLR 307 F 1 HETATM 14 C C14 CLR . . . S 5 232.822 -0.281 58.95 1 311.8 ? C14 CLR 307 F 1 HETATM 15 C C15 CLR . . . S 5 232.193 -1.31 59.872 1 313.66 ? C15 CLR 307 F 1 HETATM 16 C C16 CLR . . . S 5 232.763 -0.936 61.238 1 316.39 ? C16 CLR 307 F 1 HETATM 17 C C17 CLR . . . S 5 233.341 0.482 61.131 1 317.18 ? C17 CLR 307 F 1 HETATM 18 C C18 CLR . . . S 5 231.467 1.561 59.894 1 306.84 ? C18 CLR 307 F 1 HETATM 19 C C19 CLR . . . S 5 231.453 2.5 55.556 1 323.59 ? C19 CLR 307 F 1 HETATM 20 C C20 CLR . . . S 5 232.979 1.317 62.366 1 317.77 ? C20 CLR 307 F 1 HETATM 21 C C21 CLR . . . S 5 233.609 2.708 62.387 1 319.04 ? C21 CLR 307 F 1 HETATM 22 C C22 CLR . . . S 5 233.429 0.57 63.618 1 315.21 ? C22 CLR 307 F 1 HETATM 23 C C23 CLR . . . S 5 232.294 0.089 64.518 1 310.32 ? C23 CLR 307 F 1 HETATM 24 C C24 CLR . . . S 5 232.718 -1.212 65.195 1 305.01 ? C24 CLR 307 F 1 HETATM 25 C C25 CLR . . . S 5 232.05 -1.419 66.55 1 299.78 ? C25 CLR 307 F 1 HETATM 26 C C26 CLR . . . S 5 230.746 -2.199 66.422 1 297.33 ? C26 CLR 307 F 1 HETATM 27 C C27 CLR . . . S 5 233.002 -2.106 67.522 1 298.31 ? C27 CLR 307 F 1 HETATM 28 O O1 CLR . . . S 5 231.357 1.232 51.297 1 305.54 ? O1 CLR 307 F 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #